Wall clock time and date at job start Sun Mar 29 2020 22:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47360 * 2 1 4 4 H 1.09006 * 109.47292 * 54.67813 * 3 2 1 5 5 C 1.53002 * 109.47483 * 294.67574 * 3 2 1 6 6 C 1.52994 * 109.47329 * 174.67437 * 3 2 1 7 7 H 1.09002 * 109.46971 * 301.56610 * 6 3 2 8 8 C 1.52994 * 109.47649 * 181.56248 * 6 3 2 9 9 N 1.46501 * 109.47643 * 180.02562 * 8 6 3 10 10 C 1.36934 * 120.00269 * 89.99535 * 9 8 6 11 11 H 1.07994 * 120.00465 * 217.59588 * 10 9 8 12 12 C 1.38814 * 119.99827 * 37.60197 * 10 9 8 13 13 N 1.31623 * 119.99678 * 21.21662 * 12 10 9 14 14 Si 1.86796 * 120.00021 * 201.22192 * 12 10 9 15 15 H 1.48501 * 109.47280 * 89.99697 * 14 12 10 16 16 H 1.48503 * 109.47013 * 209.99612 * 14 12 10 17 17 H 1.48500 * 109.47070 * 329.99492 * 14 12 10 18 18 C 1.46507 * 119.99536 * 270.00124 * 9 8 6 19 19 C 1.53000 * 117.49233 * 191.22877 * 18 9 8 20 20 C 1.53005 * 117.49499 * 122.57177 * 18 9 8 21 21 O 1.42900 * 109.47091 * 61.56283 * 6 3 2 22 22 C 1.42904 * 114.00069 * 259.87515 * 21 6 3 23 23 H 1.09007 * 109.47069 * 299.99995 * 1 2 3 24 24 H 1.09000 * 109.47048 * 59.99653 * 1 2 3 25 25 H 1.08997 * 109.47335 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46649 * 240.00339 * 2 1 3 27 27 H 1.09000 * 109.47048 * 120.00347 * 2 1 3 28 28 H 1.09006 * 109.46914 * 59.99587 * 5 3 2 29 29 H 1.08997 * 109.47491 * 179.97438 * 5 3 2 30 30 H 1.08996 * 109.47005 * 300.00299 * 5 3 2 31 31 H 1.09000 * 109.46976 * 59.99610 * 8 6 3 32 32 H 1.09002 * 109.47230 * 300.00204 * 8 6 3 33 33 H 0.97006 * 119.99519 * 174.87193 * 13 12 10 34 34 H 1.08995 * 115.55157 * 336.90038 * 18 9 8 35 35 H 1.08998 * 117.50423 * 0.02562 * 19 18 9 36 36 H 1.09006 * 117.49304 * 145.02490 * 19 18 9 37 37 H 1.08999 * 117.49377 * 214.97222 * 20 18 9 38 38 H 1.09000 * 117.49787 * 359.97203 * 20 18 9 39 39 H 1.09004 * 109.47312 * 180.29555 * 22 21 6 40 40 H 1.09001 * 109.47008 * 300.29275 * 22 21 6 41 41 H 1.08997 * 109.47139 * 60.28735 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6010 1.9831 0.8385 5 6 1.6424 2.1241 -1.3108 6 6 3.5642 1.4445 0.1339 7 1 3.8487 0.9343 1.0542 8 6 4.0708 2.8875 0.1731 9 7 5.5303 2.8895 0.3006 10 6 6.3157 2.8862 -0.8211 11 1 7.2330 2.3165 -0.8363 12 6 5.9328 3.6152 -1.9386 13 7 5.0841 4.6135 -1.8140 14 14 6.6218 3.1792 -3.6192 15 1 5.7368 2.1823 -4.2737 16 1 6.6937 4.4030 -4.4574 17 1 7.9826 2.6058 -3.4627 18 6 6.1494 2.8950 1.6285 19 6 7.6541 3.1611 1.7050 20 6 7.1113 1.7534 1.9640 21 8 4.1414 0.7672 -0.9842 22 6 4.5309 -0.5801 -0.7099 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 0.5565 2.1226 -1.4061 29 1 2.0053 3.1518 -1.3106 30 1 2.0814 1.5835 -2.1492 31 1 3.6305 3.4042 1.0259 32 1 3.7863 3.3977 -0.7472 33 1 4.8736 5.1697 -2.5804 34 1 5.5279 3.2830 2.4354 35 1 8.1833 3.3325 0.7677 36 1 8.0226 3.7239 2.5627 37 1 7.1229 1.3909 2.9919 38 1 7.2831 0.9982 1.1970 39 1 4.9645 -1.0228 -1.6067 40 1 5.2684 -0.5889 0.0927 41 1 3.6569 -1.1563 -0.4063 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602447180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:22 Heat of formation + Delta-G solvation = -10.230010 kcal Electronic energy + Delta-G solvation = -19108.370540 eV Core-core repulsion = 16410.820108 eV Total energy + Delta-G solvation = -2697.550432 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.38393 -36.62986 -34.66792 -33.31160 -31.03336 -29.57069 -26.96786 -25.67284 -24.88583 -23.54741 -21.33015 -21.06207 -19.68248 -19.27434 -16.32460 -15.85944 -15.27289 -14.95466 -14.53581 -14.16621 -13.88872 -13.67740 -13.27666 -12.87944 -12.63924 -12.12400 -11.76088 -11.67524 -11.54633 -11.14296 -10.98055 -10.74595 -10.72013 -10.61863 -10.56344 -10.37421 -10.25526 -9.97103 -9.92247 -9.60369 -9.40536 -9.19208 -8.51465 -8.27841 -6.34142 -5.68002 -3.21857 3.46090 3.52186 3.54990 4.55365 4.74549 4.98420 5.11921 5.27043 5.33188 5.45066 5.52794 5.69810 5.82608 5.90224 5.93275 5.97368 6.04644 6.09004 6.14997 6.19253 6.26721 6.29688 6.30780 6.43687 6.50372 6.51673 6.56131 6.66880 6.71126 6.77352 6.90440 7.00684 7.05443 7.22079 7.74671 7.94407 8.23892 8.65903 9.28739 9.92693 10.47267 11.33866 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018696 B = 0.010129 C = 0.008117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.314731 B = 2763.732745 C = 3448.520702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.108 4.108 4 H 0.066 0.934 5 C -0.139 4.139 6 C 0.080 3.920 7 H 0.039 0.961 8 C 0.142 3.858 9 N -0.544 5.544 10 C -0.239 4.239 11 H 0.056 0.944 12 C 0.023 3.977 13 N -0.893 5.893 14 Si 0.898 3.102 15 H -0.284 1.284 16 H -0.295 1.295 17 H -0.281 1.281 18 C 0.126 3.874 19 C -0.194 4.194 20 C -0.231 4.231 21 O -0.347 6.347 22 C 0.034 3.966 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.033 0.967 32 H 0.112 0.888 33 H 0.254 0.746 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.032 0.968 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.757 -7.169 4.591 10.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.128 4.128 4 H 0.085 0.915 5 C -0.196 4.196 6 C 0.019 3.981 7 H 0.057 0.943 8 C 0.016 3.984 9 N -0.259 5.259 10 C -0.369 4.369 11 H 0.073 0.927 12 C -0.177 4.177 13 N -0.536 5.536 14 Si 0.728 3.272 15 H -0.210 1.210 16 H -0.222 1.222 17 H -0.207 1.207 18 C 0.016 3.984 19 C -0.233 4.233 20 C -0.272 4.272 21 O -0.264 6.264 22 C -0.063 4.063 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.130 0.870 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.117 0.883 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -5.868 -6.962 4.230 10.039 hybrid contribution 0.434 -0.538 -0.544 0.879 sum -5.434 -7.499 3.686 9.967 Atomic orbital electron populations 1.21818 0.96526 1.00725 1.01709 1.21642 0.95220 0.97435 1.01396 1.21633 0.97062 0.95323 0.98750 0.91527 1.21751 0.98967 1.01620 0.97256 1.23016 0.89720 0.97398 0.87969 0.94262 1.21276 0.83146 0.91115 1.02852 1.43292 1.00905 1.82553 0.99128 1.18719 1.05176 1.23126 0.89831 0.92661 1.25035 0.98729 0.95082 0.98848 1.69880 1.37431 1.16556 1.29752 0.86385 0.78685 0.77409 0.84722 1.21046 1.22156 1.20663 1.21140 0.89148 0.98213 0.89881 1.23040 1.00066 0.98228 1.01989 1.23386 1.11216 0.92864 0.99755 1.88070 1.80436 1.23228 1.34694 1.22691 0.97550 0.85479 1.00608 0.93144 0.92505 0.93545 0.91683 0.92982 0.94159 0.91664 0.92294 0.94887 0.87039 0.93614 0.89822 0.88301 0.90948 0.91217 0.89921 0.91274 0.94917 0.95518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.67 37.16 0.36 -1.46 16 2 C -0.12 -1.71 4.10 -26.73 -0.11 -1.82 16 3 C -0.11 -1.80 2.26 -90.63 -0.20 -2.00 16 4 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 5 C -0.14 -2.42 8.48 37.16 0.32 -2.11 16 6 C 0.08 1.57 2.27 -26.74 -0.06 1.51 16 7 H 0.04 0.76 7.68 -51.93 -0.40 0.37 16 8 C 0.14 3.27 4.77 -4.04 -0.02 3.25 16 9 N -0.54 -13.38 2.73 -165.66 -0.45 -13.83 16 10 C -0.24 -6.47 7.47 -15.06 -0.11 -6.58 16 11 H 0.06 1.54 7.26 -52.49 -0.38 1.16 16 12 C 0.02 0.63 4.96 -17.43 -0.09 0.54 16 13 N -0.89 -25.51 11.46 55.49 0.64 -24.87 16 14 Si 0.90 22.33 29.61 -169.99 -5.03 17.30 16 15 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 C 0.13 2.73 6.60 -67.92 -0.45 2.28 16 19 C -0.19 -3.97 9.79 -26.69 -0.26 -4.24 16 20 C -0.23 -4.51 10.18 -26.69 -0.27 -4.78 16 21 O -0.35 -7.42 8.59 -35.23 -0.30 -7.72 16 22 C 0.03 0.60 10.36 101.05 1.05 1.64 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.69 6.58 -51.93 -0.34 0.35 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.98 6.67 -51.93 -0.35 0.64 16 27 H 0.05 0.71 8.07 -51.93 -0.42 0.30 16 28 H 0.04 0.60 6.58 -51.93 -0.34 0.26 16 29 H 0.06 1.27 6.47 -51.93 -0.34 0.93 16 30 H 0.06 1.12 7.64 -51.93 -0.40 0.72 16 31 H 0.03 0.72 8.05 -51.93 -0.42 0.30 16 32 H 0.11 2.89 3.83 -51.93 -0.20 2.69 16 33 H 0.25 7.06 8.32 -40.82 -0.34 6.72 16 34 H 0.08 1.68 8.11 -51.93 -0.42 1.26 16 35 H 0.10 2.24 6.84 -51.93 -0.36 1.89 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.03 0.58 8.11 -51.93 -0.42 0.16 16 41 H 0.03 0.40 5.87 -51.93 -0.31 0.10 16 LS Contribution 317.66 15.07 4.79 4.79 Total: -1.00 -28.54 317.66 -7.39 -35.93 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -7.17 Total: 2.16 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 0.15 Total: -13.75 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.18 Total: -38.70 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.30 Total: -7.72 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.54 -7.39 -35.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602447180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.703 kcal (2) G-P(sol) polarization free energy of solvation -28.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds