Wall clock time and date at job start Sun Mar 29 2020 22:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47360 * 2 1 4 4 H 1.09006 * 109.47292 * 54.67813 * 3 2 1 5 5 C 1.53002 * 109.47483 * 294.67574 * 3 2 1 6 6 C 1.52994 * 109.47329 * 174.67437 * 3 2 1 7 7 H 1.09002 * 109.46971 * 301.56610 * 6 3 2 8 8 C 1.52994 * 109.47649 * 181.56248 * 6 3 2 9 9 N 1.46501 * 109.47643 * 180.02562 * 8 6 3 10 10 C 1.36934 * 120.00269 * 89.99535 * 9 8 6 11 11 H 1.07994 * 120.00465 * 217.59588 * 10 9 8 12 12 C 1.38814 * 119.99827 * 37.60197 * 10 9 8 13 13 N 1.31623 * 119.99678 * 21.21662 * 12 10 9 14 14 Si 1.86796 * 120.00021 * 201.22192 * 12 10 9 15 15 H 1.48501 * 109.47280 * 89.99697 * 14 12 10 16 16 H 1.48503 * 109.47013 * 209.99612 * 14 12 10 17 17 H 1.48500 * 109.47070 * 329.99492 * 14 12 10 18 18 C 1.46507 * 119.99536 * 270.00124 * 9 8 6 19 19 C 1.53000 * 117.49233 * 191.22877 * 18 9 8 20 20 C 1.53005 * 117.49499 * 122.57177 * 18 9 8 21 21 O 1.42900 * 109.47091 * 61.56283 * 6 3 2 22 22 C 1.42904 * 114.00069 * 259.87515 * 21 6 3 23 23 H 1.09007 * 109.47069 * 299.99995 * 1 2 3 24 24 H 1.09000 * 109.47048 * 59.99653 * 1 2 3 25 25 H 1.08997 * 109.47335 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46649 * 240.00339 * 2 1 3 27 27 H 1.09000 * 109.47048 * 120.00347 * 2 1 3 28 28 H 1.09006 * 109.46914 * 59.99587 * 5 3 2 29 29 H 1.08997 * 109.47491 * 179.97438 * 5 3 2 30 30 H 1.08996 * 109.47005 * 300.00299 * 5 3 2 31 31 H 1.09000 * 109.46976 * 59.99610 * 8 6 3 32 32 H 1.09002 * 109.47230 * 300.00204 * 8 6 3 33 33 H 0.97006 * 119.99519 * 174.87193 * 13 12 10 34 34 H 1.08995 * 115.55157 * 336.90038 * 18 9 8 35 35 H 1.08998 * 117.50423 * 0.02562 * 19 18 9 36 36 H 1.09006 * 117.49304 * 145.02490 * 19 18 9 37 37 H 1.08999 * 117.49377 * 214.97222 * 20 18 9 38 38 H 1.09000 * 117.49787 * 359.97203 * 20 18 9 39 39 H 1.09004 * 109.47312 * 180.29555 * 22 21 6 40 40 H 1.09001 * 109.47008 * 300.29275 * 22 21 6 41 41 H 1.08997 * 109.47139 * 60.28735 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6010 1.9831 0.8385 5 6 1.6424 2.1241 -1.3108 6 6 3.5642 1.4445 0.1339 7 1 3.8487 0.9343 1.0542 8 6 4.0708 2.8875 0.1731 9 7 5.5303 2.8895 0.3006 10 6 6.3157 2.8862 -0.8211 11 1 7.2330 2.3165 -0.8363 12 6 5.9328 3.6152 -1.9386 13 7 5.0841 4.6135 -1.8140 14 14 6.6218 3.1792 -3.6192 15 1 5.7368 2.1823 -4.2737 16 1 6.6937 4.4030 -4.4574 17 1 7.9826 2.6058 -3.4627 18 6 6.1494 2.8950 1.6285 19 6 7.6541 3.1611 1.7050 20 6 7.1113 1.7534 1.9640 21 8 4.1414 0.7672 -0.9842 22 6 4.5309 -0.5801 -0.7099 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 0.5565 2.1226 -1.4061 29 1 2.0053 3.1518 -1.3106 30 1 2.0814 1.5835 -2.1492 31 1 3.6305 3.4042 1.0259 32 1 3.7863 3.3977 -0.7472 33 1 4.8736 5.1697 -2.5804 34 1 5.5279 3.2830 2.4354 35 1 8.1833 3.3325 0.7677 36 1 8.0226 3.7239 2.5627 37 1 7.1229 1.3909 2.9919 38 1 7.2831 0.9982 1.1970 39 1 4.9645 -1.0228 -1.6067 40 1 5.2684 -0.5889 0.0927 41 1 3.6569 -1.1563 -0.4063 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602447180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:21 Heat of formation + Delta-G solvation = -25.433209 kcal Electronic energy + Delta-G solvation = -19109.029801 eV Core-core repulsion = 16410.820108 eV Total energy + Delta-G solvation = -2698.209692 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.92374 -38.31555 -36.03135 -35.15898 -32.82182 -31.06330 -28.55593 -27.18418 -26.49364 -25.19341 -22.94282 -22.49267 -21.52190 -20.66470 -18.23786 -17.50328 -16.93240 -16.51539 -16.13992 -15.79428 -15.45814 -15.30931 -14.63151 -14.33055 -14.18809 -13.54307 -13.43227 -13.17313 -12.98475 -12.72166 -12.69770 -12.46384 -12.39492 -12.26214 -12.17016 -11.89588 -11.84667 -11.54214 -11.35835 -11.27047 -11.08290 -10.88744 -10.31134 -10.02952 -8.31476 -7.72626 -5.30514 1.43202 1.49686 1.52597 2.53449 3.23041 3.27352 3.45468 3.57070 4.02143 4.10675 4.13390 4.31021 4.43162 4.50829 4.56137 4.57419 4.64574 4.70110 4.80295 4.85366 4.90946 4.93841 4.95318 4.98135 4.98678 5.07426 5.13909 5.25604 5.27997 5.38536 5.40253 5.55956 5.56504 5.60327 5.74712 5.92299 6.53791 6.78615 7.26841 7.96738 8.45661 9.23127 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018696 B = 0.010129 C = 0.008117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.314731 B = 2763.732745 C = 3448.520702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.103 4.103 4 H 0.079 0.921 5 C -0.130 4.130 6 C 0.089 3.911 7 H 0.044 0.956 8 C 0.139 3.861 9 N -0.560 5.560 10 C -0.229 4.229 11 H 0.041 0.959 12 C -0.022 4.022 13 N -0.918 5.918 14 Si 0.944 3.056 15 H -0.290 1.290 16 H -0.295 1.295 17 H -0.276 1.276 18 C 0.100 3.900 19 C -0.194 4.194 20 C -0.205 4.205 21 O -0.380 6.380 22 C 0.033 3.967 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.249 0.751 34 H 0.103 0.897 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.027 0.973 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.442 -8.608 6.021 12.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C -0.123 4.123 4 H 0.097 0.903 5 C -0.188 4.188 6 C 0.029 3.971 7 H 0.062 0.938 8 C 0.014 3.986 9 N -0.277 5.277 10 C -0.360 4.360 11 H 0.059 0.941 12 C -0.219 4.219 13 N -0.563 5.563 14 Si 0.774 3.226 15 H -0.217 1.217 16 H -0.222 1.222 17 H -0.201 1.201 18 C -0.008 4.008 19 C -0.233 4.233 20 C -0.245 4.245 21 O -0.298 6.298 22 C -0.063 4.063 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.045 0.955 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.541 -8.419 5.681 12.081 hybrid contribution 0.682 -0.113 -0.918 1.149 sum -5.859 -8.532 4.763 11.393 Atomic orbital electron populations 1.21783 0.94558 1.01998 1.02048 1.21567 0.96881 0.95274 1.01376 1.21588 0.94866 0.97300 0.98500 0.90278 1.21651 1.00410 0.99571 0.97130 1.22803 0.91529 0.95054 0.87726 0.93813 1.21244 0.82630 0.93239 1.01523 1.43432 1.01416 1.83153 0.99674 1.18690 1.04617 1.21707 0.90940 0.94129 1.25523 0.99758 0.95479 1.01119 1.69988 1.38896 1.17523 1.29884 0.85646 0.78177 0.76805 0.82000 1.21726 1.22195 1.20118 1.21423 0.89988 1.00350 0.89073 1.23039 0.98823 0.99597 1.01851 1.23305 1.08543 0.91665 1.01034 1.88017 1.80935 1.25150 1.35737 1.22801 0.98556 0.84183 1.00806 0.92215 0.92757 0.91867 0.92649 0.92005 0.91481 0.94498 0.94396 0.94398 0.90020 0.94188 0.87973 0.91196 0.88014 0.87720 0.91754 0.90730 0.95484 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.67 71.98 0.70 -2.38 16 2 C -0.11 -2.95 4.10 30.59 0.13 -2.82 16 3 C -0.10 -3.28 2.26 -10.80 -0.02 -3.31 16 4 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 5 C -0.13 -4.52 8.48 71.98 0.61 -3.91 16 6 C 0.09 3.44 2.27 30.59 0.07 3.51 16 7 H 0.04 1.64 7.68 -2.39 -0.02 1.62 16 8 C 0.14 6.46 4.77 86.38 0.41 6.87 16 9 N -0.56 -27.69 2.73 -678.03 -1.85 -29.54 16 10 C -0.23 -12.60 7.47 84.03 0.63 -11.97 16 11 H 0.04 2.32 7.26 -2.91 -0.02 2.30 16 12 C -0.02 -1.24 4.96 84.86 0.42 -0.82 16 13 N -0.92 -53.91 11.46 21.65 0.25 -53.66 16 14 Si 0.94 46.86 29.61 68.60 2.03 48.89 16 15 H -0.29 -14.56 7.11 99.48 0.71 -13.86 16 16 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 17 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 18 C 0.10 4.22 6.60 44.99 0.30 4.52 16 19 C -0.19 -7.68 9.79 30.62 0.30 -7.38 16 20 C -0.20 -7.54 10.18 30.62 0.31 -7.23 16 21 O -0.38 -16.18 8.59 -148.98 -1.28 -17.46 16 22 C 0.03 1.13 10.36 113.37 1.17 2.30 16 23 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.05 1.16 6.58 -2.39 -0.02 1.15 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 1.55 6.67 -2.38 -0.02 1.53 16 27 H 0.06 1.49 8.07 -2.39 -0.02 1.47 16 28 H 0.07 1.91 6.58 -2.38 -0.02 1.90 16 29 H 0.04 1.47 6.47 -2.39 -0.02 1.45 16 30 H 0.04 1.44 7.64 -2.39 -0.02 1.43 16 31 H 0.04 1.66 8.05 -2.39 -0.02 1.64 16 32 H 0.08 4.36 3.83 -2.39 -0.01 4.35 16 33 H 0.25 14.29 8.32 -92.70 -0.77 13.52 16 34 H 0.10 3.89 8.11 -2.39 -0.02 3.87 16 35 H 0.07 3.18 6.84 -2.39 -0.02 3.16 16 36 H 0.10 3.39 8.14 -2.38 -0.02 3.37 16 37 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.03 0.92 8.11 -2.39 -0.02 0.91 16 41 H 0.05 1.50 5.87 -2.39 -0.01 1.49 16 Total: -1.00 -62.04 317.66 5.15 -56.89 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.98 Total: 17.50 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 5.02 Total: -22.61 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -1.60 Total: -83.21 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -1.28 Total: -17.46 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -62.04 5.15 -56.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602447180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.455 kcal (2) G-P(sol) polarization free energy of solvation -62.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds