Wall clock time and date at job start Sun Mar 29 2020 22:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46944 * 2 1 4 4 H 1.08997 * 109.47186 * 305.10780 * 3 2 1 5 5 C 1.53003 * 109.47255 * 65.11694 * 3 2 1 6 6 C 1.53005 * 109.46986 * 185.11122 * 3 2 1 7 7 H 1.09007 * 109.46921 * 58.97188 * 6 3 2 8 8 C 1.53003 * 109.47281 * 298.97724 * 6 3 2 9 9 N 1.46500 * 109.46788 * 180.02562 * 8 6 3 10 10 C 1.36929 * 120.00199 * 90.00082 * 9 8 6 11 11 H 1.08005 * 120.00142 * 216.99165 * 10 9 8 12 12 C 1.38810 * 120.00397 * 36.98836 * 10 9 8 13 13 N 1.31625 * 119.99694 * 21.51126 * 12 10 9 14 14 Si 1.86804 * 120.00421 * 201.50981 * 12 10 9 15 15 H 1.48495 * 109.47070 * 59.99949 * 14 12 10 16 16 H 1.48496 * 109.47324 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46886 * 299.99997 * 14 12 10 18 18 C 1.46503 * 119.99736 * 269.71612 * 9 8 6 19 19 C 1.52996 * 117.50181 * 193.81436 * 18 9 8 20 20 C 1.52996 * 117.49861 * 125.19132 * 18 9 8 21 21 O 1.42897 * 109.46988 * 178.96985 * 6 3 2 22 22 C 1.42898 * 114.00302 * 270.76317 * 21 6 3 23 23 H 1.08996 * 109.47322 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47294 * 300.00518 * 1 2 3 25 25 H 1.09005 * 109.46950 * 59.99864 * 1 2 3 26 26 H 1.09003 * 109.47081 * 239.99886 * 2 1 3 27 27 H 1.09003 * 109.46897 * 119.99595 * 2 1 3 28 28 H 1.09000 * 109.47305 * 59.99231 * 5 3 2 29 29 H 1.08998 * 109.46852 * 179.97438 * 5 3 2 30 30 H 1.08998 * 109.46538 * 299.99744 * 5 3 2 31 31 H 1.08990 * 109.47365 * 59.99557 * 8 6 3 32 32 H 1.09007 * 109.46705 * 299.99596 * 8 6 3 33 33 H 0.97003 * 119.99718 * 184.96444 * 13 12 10 34 34 H 1.09005 * 115.55040 * 339.52522 * 18 9 8 35 35 H 1.09000 * 117.49413 * 0.02562 * 19 18 9 36 36 H 1.09000 * 117.50119 * 145.02145 * 19 18 9 37 37 H 1.08995 * 117.50358 * 214.98412 * 20 18 9 38 38 H 1.09007 * 117.49806 * 359.97438 * 20 18 9 39 39 H 1.08998 * 109.47400 * 304.51927 * 22 21 6 40 40 H 1.08995 * 109.46735 * 64.52228 * 22 21 6 41 41 H 1.09005 * 109.46975 * 184.52011 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6038 1.9821 -0.8407 5 6 1.6377 2.1257 1.3086 6 6 3.5646 1.4445 -0.1285 7 1 3.8520 0.9415 -1.0520 8 6 4.1780 0.7091 1.0648 9 7 5.6378 0.7115 0.9419 10 6 6.3691 1.7324 1.4877 11 1 7.2457 2.1021 0.9765 12 6 5.9839 2.2923 2.6981 13 7 5.2134 1.6135 3.5216 14 14 6.5589 4.0090 3.1583 15 1 6.0773 4.9809 2.1441 16 1 6.0143 4.3729 4.4910 17 1 8.0429 4.0378 3.2059 18 6 6.3156 -0.3815 0.2405 19 6 7.8305 -0.5025 0.4174 20 6 7.2523 -0.0090 -0.9104 21 8 4.0388 2.7922 -0.1526 22 6 4.1058 3.3615 -1.4616 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 2.0738 1.5861 2.1492 29 1 2.0014 3.1532 1.3087 30 1 0.5516 2.1243 1.4001 31 1 3.8162 -0.3188 1.0832 32 1 3.8906 1.2120 1.9882 33 1 4.8852 2.0307 4.3335 34 1 5.7443 -1.3050 0.1456 35 1 8.3228 0.2310 1.0560 36 1 8.2562 -1.5057 0.4390 37 1 7.2977 -0.6874 -1.7622 38 1 7.3640 1.0495 -1.1459 39 1 4.7179 2.7274 -2.1028 40 1 3.1009 3.4362 -1.8771 41 1 4.5496 4.3554 -1.4033 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602447183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:24 Heat of formation + Delta-G solvation = -11.073508 kcal Electronic energy + Delta-G solvation = -19108.360600 eV Core-core repulsion = 16410.773591 eV Total energy + Delta-G solvation = -2697.587009 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.36105 -36.58330 -35.08188 -33.23092 -30.78002 -29.48022 -27.15797 -25.68876 -24.73420 -23.30004 -21.80055 -21.31390 -19.79906 -18.67991 -16.47594 -15.78313 -15.20406 -14.92794 -14.53274 -14.16922 -14.05625 -13.68078 -13.26234 -13.07318 -12.41710 -12.07530 -11.84832 -11.68945 -11.41919 -11.31248 -10.97692 -10.80054 -10.67016 -10.65549 -10.54532 -10.34913 -10.21145 -10.06933 -9.88902 -9.57744 -9.38238 -9.20753 -8.57149 -8.23173 -6.41793 -5.62095 -3.24039 3.47414 3.52427 3.58616 4.58640 4.67337 5.00757 5.19878 5.25543 5.38018 5.43376 5.54565 5.69497 5.82699 5.90180 5.94181 5.95764 5.99366 6.10017 6.14655 6.20070 6.21240 6.25903 6.32478 6.44602 6.50307 6.52224 6.58209 6.61013 6.70563 6.78038 6.91827 6.99334 7.06434 7.23204 7.74310 7.92344 8.21011 8.63570 9.28941 9.92749 10.46646 11.33030 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.010377 C = 0.008492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.401996 B = 2697.750635 C = 3296.514574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.111 4.111 4 H 0.054 0.946 5 C -0.140 4.140 6 C 0.078 3.922 7 H 0.038 0.962 8 C 0.145 3.855 9 N -0.543 5.543 10 C -0.235 4.235 11 H 0.056 0.944 12 C 0.020 3.980 13 N -0.889 5.889 14 Si 0.893 3.107 15 H -0.281 1.281 16 H -0.293 1.293 17 H -0.285 1.285 18 C 0.126 3.874 19 C -0.197 4.197 20 C -0.230 4.230 21 O -0.346 6.346 22 C 0.036 3.964 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.112 0.888 33 H 0.252 0.748 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.031 0.969 40 H 0.022 0.978 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.352 -1.971 -7.578 10.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.130 4.130 4 H 0.073 0.927 5 C -0.197 4.197 6 C 0.018 3.982 7 H 0.056 0.944 8 C 0.019 3.981 9 N -0.258 5.258 10 C -0.365 4.365 11 H 0.074 0.926 12 C -0.179 4.179 13 N -0.532 5.532 14 Si 0.722 3.278 15 H -0.207 1.207 16 H -0.219 1.219 17 H -0.212 1.212 18 C 0.016 3.984 19 C -0.236 4.236 20 C -0.271 4.271 21 O -0.263 6.263 22 C -0.062 4.062 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.129 0.871 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.050 0.950 40 H 0.040 0.960 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.334 -1.841 -7.155 9.732 hybrid contribution 0.224 0.884 -0.276 0.953 sum -6.110 -0.958 -7.431 9.668 Atomic orbital electron populations 1.21806 0.96478 1.00892 1.01552 1.21572 0.95215 0.96731 1.02102 1.21639 0.97331 0.95613 0.98436 0.92713 1.21777 0.99085 1.01413 0.97447 1.23045 0.90582 0.83823 1.00760 0.94407 1.21260 0.82697 0.96071 0.98051 1.43316 1.00812 1.20737 1.60979 1.18701 1.09878 1.08750 0.99132 0.92629 1.24957 1.00001 0.98612 0.94363 1.70040 1.37880 1.34439 1.10860 0.86536 0.78135 0.86022 0.77064 1.20725 1.21879 1.21160 1.21144 0.88921 0.91963 0.96339 1.23046 0.99642 1.00754 1.00109 1.23357 1.11056 1.00661 0.92024 1.88148 1.86116 1.27218 1.24865 1.22594 0.98258 0.98480 0.86867 0.93290 0.92470 0.93393 0.92620 0.91176 0.91504 0.92431 0.94076 0.94382 0.87096 0.93797 0.89739 0.88327 0.90966 0.91214 0.89840 0.95011 0.95982 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.67 37.16 0.36 -1.47 16 2 C -0.12 -1.72 4.92 -26.73 -0.13 -1.86 16 3 C -0.11 -1.84 2.38 -90.61 -0.22 -2.06 16 4 H 0.05 0.87 7.88 -51.93 -0.41 0.46 16 5 C -0.14 -2.44 8.44 37.16 0.31 -2.13 16 6 C 0.08 1.56 2.19 -26.73 -0.06 1.50 16 7 H 0.04 0.74 7.73 -51.92 -0.40 0.34 16 8 C 0.15 3.31 4.38 -4.04 -0.02 3.29 16 9 N -0.54 -13.40 2.74 -165.66 -0.45 -13.86 16 10 C -0.24 -6.40 7.43 -15.06 -0.11 -6.51 16 11 H 0.06 1.56 7.21 -52.48 -0.38 1.18 16 12 C 0.02 0.56 4.96 -17.43 -0.09 0.47 16 13 N -0.89 -25.41 11.43 55.49 0.63 -24.77 16 14 Si 0.89 22.32 29.61 -169.99 -5.03 17.29 16 15 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 C 0.13 2.73 6.61 -67.93 -0.45 2.29 16 19 C -0.20 -4.04 9.80 -26.74 -0.26 -4.30 16 20 C -0.23 -4.52 10.10 -26.74 -0.27 -4.79 16 21 O -0.35 -7.55 8.99 -35.23 -0.32 -7.86 16 22 C 0.04 0.62 10.87 101.05 1.10 1.72 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.70 6.57 -51.93 -0.34 0.36 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.09 6.73 -51.93 -0.35 0.74 16 28 H 0.07 1.29 6.41 -51.93 -0.33 0.96 16 29 H 0.06 1.09 7.71 -51.93 -0.40 0.69 16 30 H 0.04 0.61 6.57 -51.93 -0.34 0.27 16 31 H 0.04 0.82 6.46 -51.93 -0.34 0.48 16 32 H 0.11 2.85 3.74 -51.92 -0.19 2.66 16 33 H 0.25 7.03 8.32 -40.82 -0.34 6.69 16 34 H 0.08 1.68 8.10 -51.93 -0.42 1.26 16 35 H 0.10 2.25 6.92 -51.93 -0.36 1.89 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.08 1.77 8.04 -51.92 -0.42 1.35 16 39 H 0.03 0.54 7.98 -51.93 -0.41 0.12 16 40 H 0.02 0.34 7.88 -51.93 -0.41 -0.07 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 318.92 15.07 4.81 4.81 Total: -1.00 -28.78 318.92 -7.37 -36.15 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.18 Total: 2.09 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 0.17 Total: -13.84 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.18 Total: -38.63 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.32 Total: -7.86 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.78 -7.37 -36.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602447183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.080 kcal (2) G-P(sol) polarization free energy of solvation -28.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds