Wall clock time and date at job start Sun Mar 29 2020 22:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46944 * 2 1 4 4 H 1.08997 * 109.47186 * 305.10780 * 3 2 1 5 5 C 1.53003 * 109.47255 * 65.11694 * 3 2 1 6 6 C 1.53005 * 109.46986 * 185.11122 * 3 2 1 7 7 H 1.09007 * 109.46921 * 58.97188 * 6 3 2 8 8 C 1.53003 * 109.47281 * 298.97724 * 6 3 2 9 9 N 1.46500 * 109.46788 * 180.02562 * 8 6 3 10 10 C 1.36929 * 120.00199 * 90.00082 * 9 8 6 11 11 H 1.08005 * 120.00142 * 216.99165 * 10 9 8 12 12 C 1.38810 * 120.00397 * 36.98836 * 10 9 8 13 13 N 1.31625 * 119.99694 * 21.51126 * 12 10 9 14 14 Si 1.86804 * 120.00421 * 201.50981 * 12 10 9 15 15 H 1.48495 * 109.47070 * 59.99949 * 14 12 10 16 16 H 1.48496 * 109.47324 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46886 * 299.99997 * 14 12 10 18 18 C 1.46503 * 119.99736 * 269.71612 * 9 8 6 19 19 C 1.52996 * 117.50181 * 193.81436 * 18 9 8 20 20 C 1.52996 * 117.49861 * 125.19132 * 18 9 8 21 21 O 1.42897 * 109.46988 * 178.96985 * 6 3 2 22 22 C 1.42898 * 114.00302 * 270.76317 * 21 6 3 23 23 H 1.08996 * 109.47322 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47294 * 300.00518 * 1 2 3 25 25 H 1.09005 * 109.46950 * 59.99864 * 1 2 3 26 26 H 1.09003 * 109.47081 * 239.99886 * 2 1 3 27 27 H 1.09003 * 109.46897 * 119.99595 * 2 1 3 28 28 H 1.09000 * 109.47305 * 59.99231 * 5 3 2 29 29 H 1.08998 * 109.46852 * 179.97438 * 5 3 2 30 30 H 1.08998 * 109.46538 * 299.99744 * 5 3 2 31 31 H 1.08990 * 109.47365 * 59.99557 * 8 6 3 32 32 H 1.09007 * 109.46705 * 299.99596 * 8 6 3 33 33 H 0.97003 * 119.99718 * 184.96444 * 13 12 10 34 34 H 1.09005 * 115.55040 * 339.52522 * 18 9 8 35 35 H 1.09000 * 117.49413 * 0.02562 * 19 18 9 36 36 H 1.09000 * 117.50119 * 145.02145 * 19 18 9 37 37 H 1.08995 * 117.50358 * 214.98412 * 20 18 9 38 38 H 1.09007 * 117.49806 * 359.97438 * 20 18 9 39 39 H 1.08998 * 109.47400 * 304.51927 * 22 21 6 40 40 H 1.08995 * 109.46735 * 64.52228 * 22 21 6 41 41 H 1.09005 * 109.46975 * 184.52011 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6038 1.9821 -0.8407 5 6 1.6377 2.1257 1.3086 6 6 3.5646 1.4445 -0.1285 7 1 3.8520 0.9415 -1.0520 8 6 4.1780 0.7091 1.0648 9 7 5.6378 0.7115 0.9419 10 6 6.3691 1.7324 1.4877 11 1 7.2457 2.1021 0.9765 12 6 5.9839 2.2923 2.6981 13 7 5.2134 1.6135 3.5216 14 14 6.5589 4.0090 3.1583 15 1 6.0773 4.9809 2.1441 16 1 6.0143 4.3729 4.4910 17 1 8.0429 4.0378 3.2059 18 6 6.3156 -0.3815 0.2405 19 6 7.8305 -0.5025 0.4174 20 6 7.2523 -0.0090 -0.9104 21 8 4.0388 2.7922 -0.1526 22 6 4.1058 3.3615 -1.4616 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 2.0738 1.5861 2.1492 29 1 2.0014 3.1532 1.3087 30 1 0.5516 2.1243 1.4001 31 1 3.8162 -0.3188 1.0832 32 1 3.8906 1.2120 1.9882 33 1 4.8852 2.0307 4.3335 34 1 5.7443 -1.3050 0.1456 35 1 8.3228 0.2310 1.0560 36 1 8.2562 -1.5057 0.4390 37 1 7.2977 -0.6874 -1.7622 38 1 7.3640 1.0495 -1.1459 39 1 4.7179 2.7274 -2.1028 40 1 3.1009 3.4362 -1.8771 41 1 4.5496 4.3554 -1.4033 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602447183.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:23 Heat of formation + Delta-G solvation = -26.552485 kcal Electronic energy + Delta-G solvation = -19109.031819 eV Core-core repulsion = 16410.773591 eV Total energy + Delta-G solvation = -2698.258228 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.91432 -38.27201 -36.46126 -35.09459 -32.61278 -30.86348 -28.76443 -27.19588 -26.43111 -24.91857 -23.16262 -22.93414 -21.62051 -20.13378 -18.33897 -17.46732 -16.86624 -16.51437 -16.12865 -15.81590 -15.55969 -15.38325 -14.66961 -14.39339 -14.04840 -13.55673 -13.52771 -13.04748 -12.95759 -12.77781 -12.65286 -12.57686 -12.39989 -12.26909 -12.16766 -11.97945 -11.82292 -11.52618 -11.38804 -11.21978 -11.08231 -10.89549 -10.27072 -10.07760 -8.40738 -7.65779 -5.32926 1.44279 1.48359 1.55004 2.56489 3.19573 3.25480 3.47873 3.58929 3.97234 4.10693 4.20544 4.31103 4.40859 4.51417 4.52720 4.57634 4.61830 4.69403 4.77128 4.84248 4.86557 4.93608 4.95102 4.96531 4.99766 5.09779 5.14693 5.26819 5.28186 5.36147 5.39282 5.56401 5.58354 5.60693 5.73705 5.92555 6.51441 6.75971 7.27123 7.96855 8.44839 9.21706 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.010377 C = 0.008492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.401996 B = 2697.750635 C = 3296.514574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.103 4.103 4 H 0.071 0.929 5 C -0.133 4.133 6 C 0.086 3.914 7 H 0.041 0.959 8 C 0.146 3.854 9 N -0.561 5.561 10 C -0.227 4.227 11 H 0.041 0.959 12 C -0.024 4.024 13 N -0.913 5.913 14 Si 0.938 3.062 15 H -0.286 1.286 16 H -0.294 1.294 17 H -0.281 1.281 18 C 0.102 3.898 19 C -0.197 4.197 20 C -0.205 4.205 21 O -0.384 6.384 22 C 0.034 3.966 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.247 0.753 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.033 0.967 40 H 0.047 0.953 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.160 -2.695 -9.386 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.122 4.122 4 H 0.089 0.911 5 C -0.190 4.190 6 C 0.026 3.974 7 H 0.059 0.941 8 C 0.020 3.980 9 N -0.277 5.277 10 C -0.358 4.358 11 H 0.059 0.941 12 C -0.220 4.220 13 N -0.558 5.558 14 Si 0.768 3.232 15 H -0.212 1.212 16 H -0.220 1.220 17 H -0.207 1.207 18 C -0.007 4.007 19 C -0.236 4.236 20 C -0.246 4.246 21 O -0.303 6.303 22 C -0.063 4.063 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.123 0.877 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.133 -2.573 -8.987 11.759 hybrid contribution 0.514 1.073 0.218 1.209 sum -6.619 -1.500 -8.769 11.089 Atomic orbital electron populations 1.21768 0.94368 1.02115 1.02019 1.21533 0.97021 0.94909 1.01823 1.21576 0.95054 0.97292 0.98322 0.91108 1.21687 1.00551 0.99686 0.97054 1.22862 0.92369 0.82953 0.99171 0.94062 1.21196 0.82086 0.96531 0.98191 1.43479 1.01569 1.21252 1.61403 1.18685 1.09263 1.09285 0.98564 0.94117 1.25444 1.00935 1.00967 0.94689 1.70137 1.39342 1.35195 1.11124 0.85810 0.77838 0.83173 0.76424 1.21218 1.21993 1.20719 1.21433 0.89619 0.92145 0.97505 1.23042 0.98619 1.01598 1.00297 1.23280 1.08578 1.00258 0.92463 1.88082 1.86738 1.28053 1.27413 1.22722 0.99890 0.98430 0.85286 0.91783 0.92701 0.92182 0.91641 0.92724 0.94143 0.94583 0.91357 0.93706 0.90033 0.94368 0.87722 0.91323 0.87982 0.87672 0.91824 0.94806 0.93472 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.67 71.98 0.70 -2.42 16 2 C -0.12 -3.11 4.92 30.59 0.15 -2.96 16 3 C -0.10 -3.28 2.38 -10.79 -0.03 -3.30 16 4 H 0.07 2.05 7.88 -2.39 -0.02 2.03 16 5 C -0.13 -4.58 8.44 71.98 0.61 -3.97 16 6 C 0.09 3.36 2.19 30.60 0.07 3.43 16 7 H 0.04 1.56 7.73 -2.38 -0.02 1.54 16 8 C 0.15 6.68 4.38 86.38 0.38 7.06 16 9 N -0.56 -27.78 2.74 -678.04 -1.86 -29.64 16 10 C -0.23 -12.59 7.43 84.03 0.62 -11.97 16 11 H 0.04 2.34 7.21 -2.91 -0.02 2.32 16 12 C -0.02 -1.34 4.96 84.86 0.42 -0.92 16 13 N -0.91 -53.63 11.43 21.65 0.25 -53.38 16 14 Si 0.94 46.85 29.61 68.60 2.03 48.88 16 15 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 16 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 17 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 18 C 0.10 4.28 6.61 44.99 0.30 4.57 16 19 C -0.20 -7.82 9.80 30.59 0.30 -7.52 16 20 C -0.21 -7.63 10.10 30.59 0.31 -7.32 16 21 O -0.38 -16.67 8.99 -148.98 -1.34 -18.01 16 22 C 0.03 1.13 10.87 113.37 1.23 2.36 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.05 1.20 6.57 -2.39 -0.02 1.18 16 25 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 1.64 6.73 -2.39 -0.02 1.62 16 28 H 0.04 1.59 6.41 -2.39 -0.02 1.58 16 29 H 0.03 1.36 7.71 -2.39 -0.02 1.35 16 30 H 0.07 1.93 6.57 -2.39 -0.02 1.91 16 31 H 0.04 1.93 6.46 -2.39 -0.02 1.92 16 32 H 0.08 4.32 3.74 -2.38 -0.01 4.31 16 33 H 0.25 14.21 8.32 -92.71 -0.77 13.44 16 34 H 0.11 3.95 8.10 -2.38 -0.02 3.93 16 35 H 0.07 3.15 6.92 -2.39 -0.02 3.13 16 36 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 37 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.06 2.63 8.04 -2.38 -0.02 2.61 16 39 H 0.03 1.10 7.98 -2.39 -0.02 1.08 16 40 H 0.05 1.33 7.88 -2.39 -0.02 1.31 16 41 H 0.08 2.43 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -62.53 318.92 5.12 -57.41 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.98 Total: 17.68 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 5.06 Total: -22.95 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -1.61 Total: -83.02 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -1.34 Total: -18.01 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -62.53 5.12 -57.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602447183.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.861 kcal (2) G-P(sol) polarization free energy of solvation -62.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds