Wall clock time and date at job start Sun Mar 29 2020 22:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47425 * 2 1 4 4 H 1.09002 * 109.47072 * 305.00023 * 3 2 1 5 5 C 1.53000 * 109.47437 * 64.99507 * 3 2 1 6 6 C 1.52997 * 109.47188 * 184.99926 * 3 2 1 7 7 H 1.08994 * 109.46930 * 60.00133 * 6 3 2 8 8 C 1.53010 * 109.47001 * 179.97438 * 6 3 2 9 9 N 1.46496 * 109.47118 * 186.80446 * 8 6 3 10 10 C 1.36941 * 120.00205 * 88.11451 * 9 8 6 11 11 H 1.08003 * 119.99579 * 338.21052 * 10 9 8 12 12 C 1.38808 * 120.00386 * 158.20263 * 10 9 8 13 13 N 1.31623 * 119.99583 * 345.14145 * 12 10 9 14 14 Si 1.86796 * 120.00483 * 165.13546 * 12 10 9 15 15 H 1.48509 * 109.46895 * 90.00132 * 14 12 10 16 16 H 1.48500 * 109.47435 * 210.00323 * 14 12 10 17 17 H 1.48504 * 109.46823 * 330.00475 * 14 12 10 18 18 C 1.46501 * 119.99836 * 268.11953 * 9 8 6 19 19 C 1.52995 * 117.50221 * 2.18429 * 18 9 8 20 20 C 1.53002 * 117.49608 * 293.52283 * 18 9 8 21 21 O 1.42901 * 109.47018 * 299.99435 * 6 3 2 22 22 C 1.42899 * 113.99471 * 139.74038 * 21 6 3 23 23 H 1.08995 * 109.47366 * 60.00415 * 1 2 3 24 24 H 1.09000 * 109.47429 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47229 * 300.00191 * 1 2 3 26 26 H 1.08996 * 109.47188 * 239.99078 * 2 1 3 27 27 H 1.09007 * 109.47002 * 119.99723 * 2 1 3 28 28 H 1.09004 * 109.47273 * 300.00292 * 5 3 2 29 29 H 1.09002 * 109.47080 * 60.00331 * 5 3 2 30 30 H 1.08999 * 109.47575 * 180.02562 * 5 3 2 31 31 H 1.09005 * 109.46671 * 306.80329 * 8 6 3 32 32 H 1.08996 * 109.46861 * 66.79884 * 8 6 3 33 33 H 0.97005 * 119.99763 * 185.03748 * 13 12 10 34 34 H 1.08998 * 115.54852 * 147.86076 * 18 9 8 35 35 H 1.09003 * 117.49701 * 0.02562 * 19 18 9 36 36 H 1.08995 * 117.49869 * 145.01705 * 19 18 9 37 37 H 1.08999 * 117.49568 * 214.98418 * 20 18 9 38 38 H 1.08991 * 117.49871 * 359.97438 * 20 18 9 39 39 H 1.08999 * 109.47593 * 56.28200 * 22 21 6 40 40 H 1.08999 * 109.47296 * 296.27945 * 22 21 6 41 41 H 1.08999 * 109.46732 * 176.28418 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4442 -0.1257 7 1 3.8531 0.9569 -1.0570 8 6 4.0748 2.8868 -0.1263 9 7 5.5123 2.8964 -0.4089 10 6 5.9553 2.9423 -1.7038 11 1 5.3080 2.6236 -2.5075 12 6 7.2361 3.3985 -1.9835 13 7 7.9160 4.0538 -1.0666 14 14 7.9947 3.0824 -3.6610 15 1 7.6634 4.2061 -4.5737 16 1 9.4695 2.9736 -3.5248 17 1 7.4542 1.8163 -4.2180 18 6 6.4758 2.8569 0.6940 19 6 5.9190 2.7547 2.1153 20 6 6.5327 4.0689 1.6261 21 8 4.1346 0.7376 0.9780 22 6 5.2434 -0.0925 0.6266 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 0.5489 2.1253 1.3968 29 1 2.0698 1.5876 2.1492 30 1 1.9982 3.1544 1.3071 31 1 3.5500 3.4573 -0.8927 32 1 3.8933 3.3367 0.8497 33 1 8.7806 4.4359 -1.2847 34 1 7.4121 2.3407 0.4819 35 1 4.8356 2.7164 2.2299 36 1 6.4890 2.1714 2.8384 37 1 7.5064 4.3497 2.0275 38 1 5.8537 4.8957 1.4185 39 1 6.0070 0.5101 0.1348 40 1 4.9088 -0.8783 -0.0506 41 1 5.6602 -0.5426 1.5276 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602447185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:26 Heat of formation + Delta-G solvation = -8.825107 kcal Electronic energy + Delta-G solvation = -19073.835096 eV Core-core repulsion = 16376.345585 eV Total energy + Delta-G solvation = -2697.489511 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.61736 -36.35393 -35.01283 -32.92900 -31.43595 -29.71883 -27.09329 -25.56860 -25.01314 -23.43116 -21.53834 -20.99980 -19.47547 -19.09067 -16.86308 -15.81949 -15.23129 -14.83741 -14.53747 -14.31242 -14.20185 -13.42899 -13.28566 -12.93674 -12.72152 -12.33178 -11.86233 -11.56343 -11.47697 -11.32341 -11.25912 -10.97687 -10.78655 -10.51605 -10.37358 -10.29040 -10.23906 -10.10747 -9.85636 -9.71564 -9.60435 -8.87927 -8.60070 -8.42520 -6.54268 -5.72863 -3.16175 3.36136 3.43824 3.44711 4.46394 4.54544 5.02690 5.22721 5.24215 5.27853 5.48586 5.53675 5.61458 5.75110 5.81426 5.97264 6.01150 6.07854 6.12445 6.18979 6.21176 6.28929 6.34586 6.36107 6.40899 6.47412 6.51742 6.61837 6.68413 6.74698 6.77849 6.80735 6.96897 7.16080 7.38345 7.58702 7.82391 8.01165 8.37903 9.25023 9.87023 10.37601 11.32386 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025120 B = 0.007969 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.377873 B = 3512.793510 C = 4027.436818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.090 4.090 4 H 0.072 0.928 5 C -0.141 4.141 6 C 0.075 3.925 7 H 0.056 0.944 8 C 0.129 3.871 9 N -0.565 5.565 10 C -0.265 4.265 11 H 0.068 0.932 12 C 0.009 3.991 13 N -0.893 5.893 14 Si 0.898 3.102 15 H -0.288 1.288 16 H -0.290 1.290 17 H -0.280 1.280 18 C 0.210 3.790 19 C -0.229 4.229 20 C -0.196 4.196 21 O -0.375 6.375 22 C 0.037 3.963 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.253 0.747 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.020 0.980 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.507 -6.288 3.597 11.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.110 4.110 4 H 0.090 0.910 5 C -0.198 4.198 6 C 0.015 3.985 7 H 0.074 0.926 8 C 0.002 3.998 9 N -0.283 5.283 10 C -0.394 4.394 11 H 0.086 0.914 12 C -0.190 4.190 13 N -0.537 5.537 14 Si 0.728 3.272 15 H -0.215 1.215 16 H -0.216 1.216 17 H -0.206 1.206 18 C 0.102 3.898 19 C -0.268 4.268 20 C -0.237 4.237 21 O -0.294 6.294 22 C -0.060 4.060 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.369 -6.249 3.750 11.870 hybrid contribution 0.685 0.028 -1.177 1.362 sum -8.684 -6.221 2.573 10.988 Atomic orbital electron populations 1.21826 0.96596 1.00883 1.01582 1.21489 0.94896 0.96902 1.01965 1.21325 0.95140 0.95955 0.98542 0.90993 1.21789 0.99719 1.00603 0.97695 1.22902 0.90675 0.95669 0.89294 0.92587 1.21309 0.85933 0.93276 0.99234 1.43463 0.98564 1.84067 1.02215 1.19099 0.98028 1.38581 0.83719 0.91379 1.24988 0.98500 0.98319 0.97215 1.70022 1.14500 1.36721 1.32443 0.86359 0.78597 0.78104 0.84104 1.21501 1.21604 1.20590 1.20303 0.92180 0.96522 0.80822 1.23520 1.00133 1.02275 1.00839 1.22999 0.99801 0.92432 1.08449 1.87736 1.47216 1.61107 1.33301 1.22730 0.90310 0.93308 0.99655 0.93134 0.93418 0.92636 0.92766 0.91503 0.93615 0.92077 0.92669 0.93280 0.92984 0.93650 0.88770 0.89337 0.91293 0.91234 0.91214 0.91649 0.96117 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.67 37.16 0.36 -1.30 16 2 C -0.11 -1.51 5.19 -26.73 -0.14 -1.64 16 3 C -0.09 -1.32 2.28 -90.62 -0.21 -1.53 16 4 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 5 C -0.14 -1.95 8.45 37.16 0.31 -1.64 16 6 C 0.08 1.34 2.16 -26.73 -0.06 1.28 16 7 H 0.06 1.09 7.70 -51.93 -0.40 0.68 16 8 C 0.13 2.66 4.36 -4.04 -0.02 2.64 16 9 N -0.56 -13.66 2.16 -165.66 -0.36 -14.02 16 10 C -0.27 -7.05 9.68 -15.06 -0.15 -7.19 16 11 H 0.07 1.78 7.87 -52.48 -0.41 1.37 16 12 C 0.01 0.25 5.15 -17.43 -0.09 0.16 16 13 N -0.89 -25.32 10.81 55.49 0.60 -24.72 16 14 Si 0.90 21.38 29.58 -169.99 -5.03 16.36 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.21 5.01 2.45 -67.93 -0.17 4.84 16 19 C -0.23 -4.72 8.31 -26.69 -0.22 -4.95 16 20 C -0.20 -4.51 9.97 -26.69 -0.27 -4.78 16 21 O -0.37 -6.74 7.12 -35.23 -0.25 -6.99 16 22 C 0.04 0.64 9.92 101.05 1.00 1.64 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.58 6.57 -51.93 -0.34 0.24 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.93 7.84 -51.93 -0.41 0.52 16 28 H 0.04 0.54 6.57 -51.93 -0.34 0.20 16 29 H 0.06 0.90 7.68 -51.93 -0.40 0.50 16 30 H 0.05 0.80 6.59 -51.93 -0.34 0.45 16 31 H 0.05 1.02 8.05 -51.93 -0.42 0.60 16 32 H 0.05 1.07 4.73 -51.93 -0.25 0.82 16 33 H 0.25 7.02 8.32 -40.82 -0.34 6.68 16 34 H 0.09 2.48 7.42 -51.93 -0.39 2.10 16 35 H 0.09 1.81 5.46 -51.93 -0.28 1.53 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 39 H 0.06 1.33 5.85 -51.93 -0.30 1.02 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 312.50 15.07 4.71 4.71 Total: -1.00 -27.57 312.50 -7.18 -34.75 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.22 Total: 2.37 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 0.37 Total: -12.45 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.24 Total: -38.74 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.25 Total: -6.99 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.57 -7.18 -34.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602447185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.925 kcal (2) G-P(sol) polarization free energy of solvation -27.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds