Wall clock time and date at job start Sun Mar 29 2020 22:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47425 * 2 1 4 4 H 1.09002 * 109.47072 * 305.00023 * 3 2 1 5 5 C 1.53000 * 109.47437 * 64.99507 * 3 2 1 6 6 C 1.52997 * 109.47188 * 184.99926 * 3 2 1 7 7 H 1.08994 * 109.46930 * 60.00133 * 6 3 2 8 8 C 1.53010 * 109.47001 * 179.97438 * 6 3 2 9 9 N 1.46496 * 109.47118 * 186.80446 * 8 6 3 10 10 C 1.36941 * 120.00205 * 88.11451 * 9 8 6 11 11 H 1.08003 * 119.99579 * 338.21052 * 10 9 8 12 12 C 1.38808 * 120.00386 * 158.20263 * 10 9 8 13 13 N 1.31623 * 119.99583 * 345.14145 * 12 10 9 14 14 Si 1.86796 * 120.00483 * 165.13546 * 12 10 9 15 15 H 1.48509 * 109.46895 * 90.00132 * 14 12 10 16 16 H 1.48500 * 109.47435 * 210.00323 * 14 12 10 17 17 H 1.48504 * 109.46823 * 330.00475 * 14 12 10 18 18 C 1.46501 * 119.99836 * 268.11953 * 9 8 6 19 19 C 1.52995 * 117.50221 * 2.18429 * 18 9 8 20 20 C 1.53002 * 117.49608 * 293.52283 * 18 9 8 21 21 O 1.42901 * 109.47018 * 299.99435 * 6 3 2 22 22 C 1.42899 * 113.99471 * 139.74038 * 21 6 3 23 23 H 1.08995 * 109.47366 * 60.00415 * 1 2 3 24 24 H 1.09000 * 109.47429 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47229 * 300.00191 * 1 2 3 26 26 H 1.08996 * 109.47188 * 239.99078 * 2 1 3 27 27 H 1.09007 * 109.47002 * 119.99723 * 2 1 3 28 28 H 1.09004 * 109.47273 * 300.00292 * 5 3 2 29 29 H 1.09002 * 109.47080 * 60.00331 * 5 3 2 30 30 H 1.08999 * 109.47575 * 180.02562 * 5 3 2 31 31 H 1.09005 * 109.46671 * 306.80329 * 8 6 3 32 32 H 1.08996 * 109.46861 * 66.79884 * 8 6 3 33 33 H 0.97005 * 119.99763 * 185.03748 * 13 12 10 34 34 H 1.08998 * 115.54852 * 147.86076 * 18 9 8 35 35 H 1.09003 * 117.49701 * 0.02562 * 19 18 9 36 36 H 1.08995 * 117.49869 * 145.01705 * 19 18 9 37 37 H 1.08999 * 117.49568 * 214.98418 * 20 18 9 38 38 H 1.08991 * 117.49871 * 359.97438 * 20 18 9 39 39 H 1.08999 * 109.47593 * 56.28200 * 22 21 6 40 40 H 1.08999 * 109.47296 * 296.27945 * 22 21 6 41 41 H 1.08999 * 109.46732 * 176.28418 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4442 -0.1257 7 1 3.8531 0.9569 -1.0570 8 6 4.0748 2.8868 -0.1263 9 7 5.5123 2.8964 -0.4089 10 6 5.9553 2.9423 -1.7038 11 1 5.3080 2.6236 -2.5075 12 6 7.2361 3.3985 -1.9835 13 7 7.9160 4.0538 -1.0666 14 14 7.9947 3.0824 -3.6610 15 1 7.6634 4.2061 -4.5737 16 1 9.4695 2.9736 -3.5248 17 1 7.4542 1.8163 -4.2180 18 6 6.4758 2.8569 0.6940 19 6 5.9190 2.7547 2.1153 20 6 6.5327 4.0689 1.6261 21 8 4.1346 0.7376 0.9780 22 6 5.2434 -0.0925 0.6266 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 0.5489 2.1253 1.3968 29 1 2.0698 1.5876 2.1492 30 1 1.9982 3.1544 1.3071 31 1 3.5500 3.4573 -0.8927 32 1 3.8933 3.3367 0.8497 33 1 8.7806 4.4359 -1.2847 34 1 7.4121 2.3407 0.4819 35 1 4.8356 2.7164 2.2299 36 1 6.4890 2.1714 2.8384 37 1 7.5064 4.3497 2.0275 38 1 5.8537 4.8957 1.4185 39 1 6.0070 0.5101 0.1348 40 1 4.9088 -0.8783 -0.0506 41 1 5.6602 -0.5426 1.5276 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602447185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:25 Heat of formation + Delta-G solvation = -22.591743 kcal Electronic energy + Delta-G solvation = -19074.432062 eV Core-core repulsion = 16376.345585 eV Total energy + Delta-G solvation = -2698.086477 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.11982 -38.04561 -36.26158 -34.84583 -33.16903 -31.09833 -28.51077 -27.13097 -26.35231 -25.19524 -22.94573 -22.81659 -21.05515 -20.57983 -18.75223 -17.31886 -16.85740 -16.34131 -16.28042 -16.00480 -15.44475 -15.07754 -14.64535 -14.45985 -14.07254 -13.57973 -13.37940 -13.21254 -12.98173 -12.81002 -12.65019 -12.52118 -12.44607 -12.11644 -12.00751 -11.90234 -11.63433 -11.52378 -11.43732 -11.30426 -11.13607 -10.73330 -10.45884 -10.13848 -8.47480 -7.78357 -5.22811 1.45382 1.47889 1.55759 2.50452 3.13362 3.27447 3.53032 3.62479 4.03228 4.10317 4.17829 4.43096 4.50741 4.58747 4.60078 4.67027 4.70104 4.76758 4.80196 4.85127 4.86587 4.94700 4.98233 5.07387 5.14963 5.17897 5.23031 5.29662 5.30515 5.32843 5.39333 5.55802 5.58719 5.61847 5.64651 5.78585 6.34708 6.55853 7.21227 7.92176 8.37706 9.24486 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025120 B = 0.007969 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.377873 B = 3512.793510 C = 4027.436818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.087 4.087 4 H 0.077 0.923 5 C -0.136 4.136 6 C 0.086 3.914 7 H 0.038 0.962 8 C 0.129 3.871 9 N -0.576 5.576 10 C -0.269 4.269 11 H 0.068 0.932 12 C -0.041 4.041 13 N -0.921 5.921 14 Si 0.959 3.041 15 H -0.288 1.288 16 H -0.295 1.295 17 H -0.273 1.273 18 C 0.197 3.803 19 C -0.187 4.187 20 C -0.204 4.204 21 O -0.376 6.376 22 C 0.040 3.960 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.247 0.753 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.032 0.968 40 H 0.033 0.967 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.134 -7.375 3.962 13.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C -0.106 4.106 4 H 0.095 0.905 5 C -0.193 4.193 6 C 0.025 3.975 7 H 0.056 0.944 8 C 0.004 3.996 9 N -0.295 5.295 10 C -0.399 4.399 11 H 0.085 0.915 12 C -0.238 4.238 13 N -0.566 5.566 14 Si 0.788 3.212 15 H -0.215 1.215 16 H -0.222 1.222 17 H -0.198 1.198 18 C 0.089 3.911 19 C -0.225 4.225 20 C -0.244 4.244 21 O -0.294 6.294 22 C -0.057 4.057 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.030 -7.351 4.120 13.880 hybrid contribution 1.160 0.356 -1.272 1.758 sum -9.870 -6.995 2.847 12.428 Atomic orbital electron populations 1.21787 0.94601 1.01914 1.02134 1.21427 0.96580 0.95346 1.01426 1.21309 0.92446 0.97475 0.99346 0.90456 1.21740 1.01209 0.99633 0.96700 1.22705 0.92840 0.93335 0.88585 0.94392 1.21451 0.83996 0.95205 0.98988 1.43583 1.00006 1.84289 1.01619 1.19367 0.98147 1.37442 0.84910 0.91457 1.25636 0.99043 0.98727 1.00352 1.70175 1.14462 1.38027 1.33970 0.85400 0.77248 0.78025 0.80522 1.21453 1.22161 1.19779 1.20061 0.91716 0.97144 0.82203 1.23428 1.00503 0.99953 0.98649 1.22918 0.99755 0.92651 1.09083 1.87729 1.47228 1.61164 1.33312 1.22710 0.89346 0.92954 1.00684 0.92651 0.92232 0.91991 0.93247 0.92132 0.91280 0.92801 0.93631 0.93879 0.92758 0.94348 0.91861 0.88648 0.89210 0.91482 0.92576 0.94904 0.94867 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.67 71.98 0.70 -2.06 16 2 C -0.11 -2.62 5.19 30.59 0.16 -2.47 16 3 C -0.09 -2.36 2.28 -10.80 -0.02 -2.38 16 4 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 5 C -0.14 -3.43 8.45 71.98 0.61 -2.82 16 6 C 0.09 2.97 2.16 30.60 0.07 3.04 16 7 H 0.04 1.46 7.70 -2.39 -0.02 1.44 16 8 C 0.13 5.28 4.36 86.38 0.38 5.66 16 9 N -0.58 -28.14 2.16 -678.03 -1.46 -29.60 16 10 C -0.27 -14.47 9.68 84.03 0.81 -13.65 16 11 H 0.07 3.55 7.87 -2.91 -0.02 3.53 16 12 C -0.04 -2.27 5.15 84.86 0.44 -1.83 16 13 N -0.92 -53.41 10.81 21.65 0.23 -53.18 16 14 Si 0.96 44.62 29.58 68.60 2.03 46.65 16 15 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 16 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 C 0.20 9.49 2.45 44.99 0.11 9.60 16 19 C -0.19 -7.48 8.31 30.62 0.25 -7.23 16 20 C -0.20 -9.40 9.97 30.62 0.31 -9.09 16 21 O -0.38 -12.93 7.12 -148.98 -1.06 -13.99 16 22 C 0.04 1.34 9.92 113.37 1.12 2.46 16 23 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 1.09 6.57 -2.39 -0.02 1.07 16 26 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.53 7.84 -2.38 -0.02 1.51 16 28 H 0.07 1.43 6.57 -2.39 -0.02 1.41 16 29 H 0.05 1.44 7.68 -2.39 -0.02 1.43 16 30 H 0.04 1.23 6.59 -2.39 -0.02 1.21 16 31 H 0.04 1.79 8.05 -2.38 -0.02 1.77 16 32 H 0.05 2.18 4.73 -2.39 -0.01 2.17 16 33 H 0.25 14.06 8.32 -92.70 -0.77 13.29 16 34 H 0.06 3.44 7.42 -2.39 -0.02 3.42 16 35 H 0.10 3.71 5.46 -2.39 -0.01 3.70 16 36 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 37 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.06 2.71 8.14 -2.39 -0.02 2.70 16 39 H 0.03 1.33 5.85 -2.39 -0.01 1.31 16 40 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -58.86 312.50 5.64 -53.22 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.97 Total: 17.69 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 4.93 Total: -20.78 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -1.23 Total: -82.78 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -1.06 Total: -13.99 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -58.86 5.64 -53.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602447185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.628 kcal (2) G-P(sol) polarization free energy of solvation -58.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds