Wall clock time and date at job start Sun Mar 29 2020 22:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47394 * 2 1 4 4 H 1.08999 * 109.50533 * 300.84142 * 3 2 1 5 5 C 1.53088 * 109.50596 * 60.97425 * 3 2 1 6 6 O 1.43018 * 109.25830 * 176.78137 * 5 3 2 7 7 C 1.43011 * 113.74420 * 301.33429 * 6 5 3 8 8 C 1.53096 * 109.25697 * 58.66317 * 7 6 5 9 9 N 1.47010 * 109.26134 * 303.15791 * 8 7 6 10 10 C 1.46899 * 111.00102 * 182.39087 * 9 8 7 11 11 C 1.52994 * 109.47223 * 322.86836 * 10 9 8 12 12 H 1.09004 * 109.47527 * 54.41537 * 11 10 9 13 13 C 1.53003 * 109.47160 * 294.41507 * 11 10 9 14 14 C 1.53009 * 109.47375 * 174.41404 * 11 10 9 15 15 C 1.50700 * 109.47203 * 184.99912 * 14 11 10 16 16 H 1.08004 * 119.99546 * 0.02562 * 15 14 11 17 17 C 1.37872 * 119.99993 * 179.97438 * 15 14 11 18 18 N 1.31515 * 120.00131 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00074 * 0.02562 * 17 15 14 20 20 H 1.48510 * 109.47004 * 89.99620 * 19 17 15 21 21 H 1.48494 * 109.47483 * 209.99572 * 19 17 15 22 22 H 1.48505 * 109.47214 * 330.00083 * 19 17 15 23 23 H 1.08998 * 109.47243 * 174.77465 * 1 2 3 24 24 H 1.09006 * 109.46835 * 54.77192 * 1 2 3 25 25 H 1.08997 * 109.46800 * 294.77567 * 1 2 3 26 26 H 1.09003 * 109.47430 * 119.99955 * 2 1 3 27 27 H 1.09006 * 109.47533 * 239.99961 * 2 1 3 28 28 H 1.08995 * 109.51098 * 296.72361 * 5 3 2 29 29 H 1.09007 * 109.50839 * 56.84942 * 5 3 2 30 30 H 1.09009 * 109.50122 * 298.73864 * 7 6 5 31 31 H 1.08994 * 109.50975 * 178.60394 * 7 6 5 32 32 H 1.08998 * 109.50933 * 183.22129 * 8 7 6 33 33 H 1.09003 * 109.50203 * 63.09142 * 8 7 6 34 34 H 1.09008 * 109.47216 * 82.86770 * 10 9 8 35 35 H 1.09001 * 109.47309 * 202.86660 * 10 9 8 36 36 H 1.09001 * 109.46808 * 315.02143 * 13 11 10 37 37 H 1.09001 * 109.47072 * 75.01993 * 13 11 10 38 38 H 1.09002 * 109.47279 * 195.01894 * 13 11 10 39 39 H 1.09000 * 109.46992 * 304.99888 * 14 11 10 40 40 H 1.08995 * 109.46586 * 64.99984 * 14 11 10 41 41 H 0.97002 * 120.00246 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6648 1.9612 -0.8821 5 6 1.5504 2.1579 1.2618 6 8 2.0915 3.4813 1.2938 7 6 3.5210 3.5195 1.2776 8 6 4.0306 2.8179 0.0160 9 7 3.5101 1.4434 -0.0184 10 6 4.0224 0.7155 -1.1870 11 6 4.1076 1.6660 -2.3828 12 1 4.6998 2.5398 -2.1111 13 6 2.6990 2.1091 -2.7835 14 6 4.7701 0.9469 -3.5597 15 6 4.9655 1.9175 -4.6959 16 1 4.6491 2.9446 -4.5890 17 6 5.5490 1.4945 -5.8713 18 7 5.7190 2.3414 -6.8630 19 14 6.0967 -0.2818 -6.0557 20 1 4.9801 -1.0891 -6.6098 21 1 7.2598 -0.3481 -6.9765 22 1 6.4854 -0.8204 -4.7275 23 1 -0.3633 -1.0234 -0.0936 24 1 -0.3633 0.5928 -0.8395 25 1 -0.3633 0.4307 0.9331 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 0.4617 2.2098 1.2515 29 1 1.8807 1.6082 2.1433 30 1 3.9087 3.0093 2.1595 31 1 3.8575 4.5562 1.2787 32 1 5.1203 2.7941 0.0276 33 1 3.6871 3.3593 -0.8655 34 1 5.0144 0.3224 -0.9639 35 1 3.3500 -0.1087 -1.4251 36 1 2.0359 1.2440 -2.7963 37 1 2.3294 2.8395 -2.0637 38 1 2.7281 2.5593 -3.7757 39 1 5.7375 0.5538 -3.2473 40 1 4.1333 0.1258 -3.8888 41 1 6.1292 2.0438 -7.6901 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602449368.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:55 Heat of formation + Delta-G solvation = -48.054423 kcal Electronic energy + Delta-G solvation = -18742.494751 eV Core-core repulsion = 16043.304129 eV Total energy + Delta-G solvation = -2699.190622 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.11842 -36.91210 -34.74287 -33.33170 -31.79636 -29.61299 -27.98127 -27.42197 -25.04337 -24.51092 -22.11698 -21.68854 -19.90209 -18.85298 -16.88099 -16.43910 -16.09714 -15.33731 -15.00577 -14.59782 -14.46961 -13.97098 -13.79618 -13.42331 -12.93508 -12.72648 -12.42161 -12.21264 -11.86748 -11.66839 -11.48477 -11.26593 -11.11327 -10.97465 -10.78587 -10.66495 -10.48483 -10.33547 -9.77223 -9.72585 -9.67540 -9.45100 -9.13827 -8.54151 -7.84345 -6.04593 -4.01901 3.29423 3.37236 3.40696 3.88290 4.04747 4.44546 4.80649 4.92734 5.07780 5.17913 5.23735 5.28277 5.36086 5.38096 5.46139 5.57790 5.64730 5.71292 5.74848 5.82656 5.87056 5.94291 5.95154 6.08757 6.15812 6.21262 6.25853 6.34585 6.47492 6.69765 6.86128 7.04030 7.15311 7.23304 7.28074 7.30837 7.44594 7.79431 8.54033 9.00171 9.58239 11.08773 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031116 B = 0.006177 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.651326 B = 4531.792290 C = 4929.884912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C 0.029 3.971 4 H 0.072 0.928 5 C 0.070 3.930 6 O -0.388 6.388 7 C 0.064 3.936 8 C 0.010 3.990 9 N -0.530 5.530 10 C 0.047 3.953 11 C -0.111 4.111 12 H 0.069 0.931 13 C -0.143 4.143 14 C -0.006 4.006 15 C -0.515 4.515 16 H 0.072 0.928 17 C 0.065 3.935 18 N -0.904 5.904 19 Si 0.879 3.121 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.266 1.266 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.015 0.985 40 H 0.010 0.990 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.699 -2.882 16.143 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.079 4.079 4 H 0.090 0.910 5 C -0.008 4.008 6 O -0.307 6.307 7 C -0.013 4.013 8 C -0.118 4.118 9 N -0.254 5.254 10 C -0.081 4.081 11 C -0.130 4.130 12 H 0.087 0.913 13 C -0.200 4.200 14 C -0.044 4.044 15 C -0.553 4.553 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.544 5.544 19 Si 0.706 3.294 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.190 1.190 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.033 0.967 40 H 0.028 0.972 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.576 -2.944 16.409 18.312 hybrid contribution 0.337 -0.778 -1.115 1.401 sum -7.239 -3.722 15.294 17.325 Atomic orbital electron populations 1.21805 0.95676 1.01771 1.01786 1.21611 0.95405 0.95710 1.02931 1.22671 0.89136 0.96946 0.99151 0.91023 1.22740 0.98227 0.83171 0.96615 1.87955 1.20532 1.27281 1.94912 1.22695 0.80842 1.00766 0.97042 1.22894 1.00861 0.89765 0.98287 1.62549 1.06822 1.14370 1.41665 1.22568 1.00411 0.96861 0.88210 1.21668 0.96912 0.98787 0.95669 0.91294 1.22048 0.96111 0.99716 1.02147 1.19554 0.95069 0.96120 0.93621 1.21128 1.39493 0.97576 0.97075 0.91000 1.25033 0.95422 0.97282 0.95833 1.69916 1.44703 1.34857 1.04894 0.86798 0.78469 0.85866 0.78252 1.20409 1.21457 1.19038 0.92579 0.92516 0.92727 0.91407 0.90980 0.88896 0.92895 0.92824 0.88789 0.89720 0.92163 0.91054 0.90788 0.93983 0.94196 0.90896 0.96690 0.97206 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.43 37.16 0.35 -1.12 16 2 C -0.12 -1.37 5.29 -26.73 -0.14 -1.51 16 3 C 0.03 0.39 1.73 -67.60 -0.12 0.27 16 4 H 0.07 1.06 4.38 -51.93 -0.23 0.83 16 5 C 0.07 0.84 5.87 37.20 0.22 1.06 16 6 O -0.39 -5.42 10.83 -35.23 -0.38 -5.80 16 7 C 0.06 0.79 7.01 37.21 0.26 1.05 16 8 C 0.01 0.14 4.32 -3.71 -0.02 0.13 16 9 N -0.53 -7.68 4.75 -226.35 -1.07 -8.75 16 10 C 0.05 0.76 5.07 -3.83 -0.02 0.74 16 11 C -0.11 -2.13 1.81 -90.62 -0.16 -2.30 16 12 H 0.07 1.38 6.07 -51.93 -0.32 1.07 16 13 C -0.14 -2.67 7.40 37.16 0.28 -2.39 16 14 C -0.01 -0.13 3.52 -27.88 -0.10 -0.23 16 15 C -0.51 -14.46 8.74 -34.44 -0.30 -14.76 16 16 H 0.07 2.18 7.43 -52.48 -0.39 1.79 16 17 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 18 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 19 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.46 6.82 -51.93 -0.35 0.11 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.91 5.88 -51.93 -0.31 0.60 16 28 H 0.09 0.98 6.76 -51.93 -0.35 0.63 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 33 H 0.06 0.96 4.91 -51.93 -0.25 0.71 16 34 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 35 H 0.07 1.16 5.22 -51.93 -0.27 0.89 16 36 H 0.04 0.73 7.75 -51.93 -0.40 0.32 16 37 H 0.04 0.68 4.86 -51.93 -0.25 0.43 16 38 H 0.07 1.56 6.66 -51.93 -0.35 1.22 16 39 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 40 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 298.28 15.07 4.50 4.50 Total: -1.00 -30.21 298.28 -7.49 -37.70 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.78 Total: -0.35 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 0.15 Total: -17.27 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.30 Total: -35.88 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.38 Total: -5.80 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.21 -7.49 -37.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602449368.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.354 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds