Wall clock time and date at job start Sun Mar 29 2020 22:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47099 * 2 1 4 4 H 1.09001 * 109.50270 * 54.78243 * 3 2 1 5 5 C 1.53087 * 109.50655 * 294.64865 * 3 2 1 6 6 O 1.43019 * 109.26202 * 183.21640 * 5 3 2 7 7 C 1.43014 * 113.73567 * 58.66652 * 6 5 3 8 8 C 1.53094 * 109.26051 * 301.33331 * 7 6 5 9 9 N 1.47016 * 109.50502 * 174.86386 * 3 2 1 10 10 C 1.46897 * 111.00088 * 302.32838 * 9 3 2 11 11 C 1.53000 * 109.47447 * 300.03154 * 10 9 3 12 12 H 1.09005 * 109.46883 * 330.99247 * 11 10 9 13 13 C 1.53003 * 109.46820 * 90.98408 * 11 10 9 14 14 C 1.52991 * 109.47438 * 210.98766 * 11 10 9 15 15 C 1.50705 * 109.47160 * 174.99979 * 14 11 10 16 16 H 1.08002 * 119.99804 * 359.97438 * 15 14 11 17 17 C 1.37879 * 119.99941 * 179.97438 * 15 14 11 18 18 N 1.31513 * 119.99988 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99674 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47623 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47062 * 120.00407 * 19 17 15 22 22 H 1.48496 * 109.47011 * 239.99775 * 19 17 15 23 23 H 1.08994 * 109.47088 * 65.49825 * 1 2 3 24 24 H 1.09001 * 109.46864 * 185.50203 * 1 2 3 25 25 H 1.09000 * 109.47180 * 305.49980 * 1 2 3 26 26 H 1.09001 * 109.47427 * 240.00644 * 2 1 3 27 27 H 1.09002 * 109.47391 * 119.99523 * 2 1 3 28 28 H 1.09000 * 109.51068 * 303.15103 * 5 3 2 29 29 H 1.09004 * 109.51313 * 63.23775 * 5 3 2 30 30 H 1.09000 * 109.50640 * 181.40228 * 7 6 5 31 31 H 1.08999 * 109.50998 * 61.27237 * 7 6 5 32 32 H 1.09000 * 109.51080 * 296.91377 * 8 7 6 33 33 H 1.09002 * 109.51250 * 176.78062 * 8 7 6 34 34 H 1.08999 * 109.47536 * 60.03846 * 10 9 3 35 35 H 1.09000 * 109.46892 * 180.02562 * 10 9 3 36 36 H 1.08992 * 109.47568 * 297.94122 * 13 11 10 37 37 H 1.09002 * 109.46958 * 57.94638 * 13 11 10 38 38 H 1.09000 * 109.46863 * 177.94170 * 13 11 10 39 39 H 1.09003 * 109.47055 * 294.99797 * 14 11 10 40 40 H 1.08998 * 109.47151 * 55.00410 * 14 11 10 41 41 H 0.96996 * 119.99831 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6027 1.9832 0.8394 5 6 1.6430 2.1251 -1.3115 6 8 2.1861 3.4479 -1.3382 7 6 3.6108 3.4878 -1.2202 8 6 4.0277 2.8190 0.0923 9 7 3.5049 1.4453 0.1241 10 6 3.9312 0.7478 1.3446 11 6 3.3335 1.4473 2.5670 12 1 3.1920 2.5055 2.3470 13 6 1.9838 0.8126 2.9084 14 6 4.2836 1.2961 3.7565 15 6 3.7553 2.0874 4.9252 16 1 2.8341 2.6429 4.8290 17 6 4.4479 2.1021 6.1173 18 7 5.5699 1.4261 6.2343 19 14 3.7933 3.0835 7.5657 20 1 2.5242 3.7505 7.1788 21 1 3.5433 2.1704 8.7098 22 1 4.7919 4.1093 7.9603 23 1 -0.3633 0.4262 -0.9351 24 1 -0.3633 -1.0230 0.0985 25 1 -0.3633 0.5968 0.8366 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.0354 1.5536 -2.1527 29 1 0.5564 2.1757 -1.3813 30 1 3.9474 4.5245 -1.2234 31 1 4.0605 2.9559 -2.0586 32 1 3.6222 3.3823 0.9327 33 1 5.1154 2.7960 0.1597 34 1 3.5857 -0.2855 1.3121 35 1 5.0190 0.7651 1.4118 36 1 1.2953 0.9525 2.0751 37 1 2.1196 -0.2531 3.0926 38 1 1.5750 1.2864 3.8009 39 1 4.3555 0.2441 4.0327 40 1 5.2708 1.6681 3.4825 41 1 6.0573 1.4368 7.0729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602449369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:57 Heat of formation + Delta-G solvation = -54.686636 kcal Electronic energy + Delta-G solvation = -18765.176826 eV Core-core repulsion = 16065.698610 eV Total energy + Delta-G solvation = -2699.478216 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.02974 -36.88359 -34.40618 -33.47110 -31.85951 -29.56922 -27.71759 -26.84630 -24.86978 -24.28633 -22.50863 -21.54224 -20.29882 -18.62859 -16.66186 -16.33305 -15.99499 -15.37979 -14.97483 -14.55715 -14.36750 -13.89958 -13.47241 -13.20395 -12.82922 -12.55402 -12.39275 -12.12020 -11.77846 -11.52018 -11.39289 -11.25049 -10.94697 -10.84743 -10.78254 -10.48660 -10.47604 -10.29582 -10.25890 -9.66636 -9.39108 -9.29232 -9.08331 -8.35622 -7.79983 -5.99990 -4.01583 3.29642 3.37462 3.41376 3.92114 4.11399 4.45566 4.88382 5.00347 5.12872 5.22841 5.29940 5.35532 5.42808 5.44353 5.52575 5.66875 5.71042 5.79238 5.84489 5.89550 5.96409 5.99857 6.09358 6.10729 6.25273 6.34819 6.38642 6.51692 6.53896 6.88276 7.04768 7.11067 7.19468 7.36374 7.41286 7.66072 7.81738 7.99496 8.43584 9.04813 9.62195 11.11156 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028532 B = 0.006145 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.107980 B = 4555.384736 C = 4884.933737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C 0.041 3.959 4 H 0.065 0.935 5 C 0.069 3.931 6 O -0.389 6.389 7 C 0.065 3.935 8 C 0.012 3.988 9 N -0.532 5.532 10 C 0.052 3.948 11 C -0.121 4.121 12 H 0.058 0.942 13 C -0.146 4.146 14 C 0.031 3.969 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.888 3.112 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.058 0.942 39 H 0.016 0.984 40 H 0.013 0.987 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.717 -0.770 -14.551 16.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.067 4.067 4 H 0.083 0.917 5 C -0.009 4.009 6 O -0.307 6.307 7 C -0.012 4.012 8 C -0.116 4.116 9 N -0.256 5.256 10 C -0.075 4.075 11 C -0.140 4.140 12 H 0.077 0.923 13 C -0.203 4.203 14 C -0.006 4.006 15 C -0.552 4.552 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.492 -0.899 -14.867 16.247 hybrid contribution -0.313 0.690 1.789 1.943 sum -6.805 -0.210 -13.078 14.743 Atomic orbital electron populations 1.21822 0.95788 1.01777 1.01683 1.21672 0.95354 0.95673 1.03282 1.22474 0.89194 0.96989 0.98077 0.91738 1.22756 0.98463 0.83278 0.96353 1.87951 1.21042 1.27498 1.94248 1.22666 0.81170 1.00833 0.96517 1.22799 1.01053 0.89904 0.97839 1.62561 1.09171 1.15261 1.38610 1.22500 1.00331 0.97771 0.86887 1.21821 0.96850 0.98671 0.96699 0.92335 1.22153 0.97079 1.00096 1.00929 1.19107 0.93446 0.97073 0.90993 1.21284 1.07952 1.29350 0.96629 0.92753 1.25015 0.94995 0.95714 0.98749 1.69970 1.15702 1.42003 1.25892 0.86599 0.78965 0.80020 0.82815 1.19822 1.21042 1.21042 0.92893 0.92574 0.92417 0.91630 0.90214 0.92844 0.88932 0.88823 0.92751 0.92833 0.89725 0.90863 0.90875 0.93469 0.93729 0.92297 0.96610 0.96841 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.38 37.16 0.35 -1.24 16 2 C -0.12 -1.50 4.31 -26.73 -0.12 -1.61 16 3 C 0.04 0.58 1.38 -67.60 -0.09 0.48 16 4 H 0.06 1.04 5.40 -51.93 -0.28 0.76 16 5 C 0.07 0.87 5.97 37.20 0.22 1.09 16 6 O -0.39 -5.63 10.83 -35.23 -0.38 -6.01 16 7 C 0.07 0.84 7.01 37.21 0.26 1.10 16 8 C 0.01 0.18 5.35 -3.71 -0.02 0.16 16 9 N -0.53 -8.12 4.75 -226.34 -1.07 -9.20 16 10 C 0.05 0.90 4.96 -3.83 -0.02 0.88 16 11 C -0.12 -2.43 1.72 -90.62 -0.16 -2.59 16 12 H 0.06 1.24 5.57 -51.93 -0.29 0.95 16 13 C -0.15 -2.72 7.44 37.16 0.28 -2.44 16 14 C 0.03 0.80 4.32 -27.88 -0.12 0.67 16 15 C -0.51 -14.42 8.38 -34.44 -0.29 -14.71 16 16 H 0.05 1.51 7.06 -52.49 -0.37 1.14 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 19 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H 0.05 0.48 6.93 -51.93 -0.36 0.12 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.64 7.33 -51.93 -0.38 0.26 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.08 4.54 -51.93 -0.24 0.85 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 1.02 6.87 -51.93 -0.36 0.67 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.91 6.13 -51.93 -0.32 0.59 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.21 5.87 -51.93 -0.30 0.90 16 35 H 0.07 1.32 7.72 -51.93 -0.40 0.92 16 36 H 0.05 0.75 3.05 -51.93 -0.16 0.59 16 37 H 0.04 0.81 7.92 -51.93 -0.41 0.40 16 38 H 0.06 1.21 6.89 -51.93 -0.36 0.85 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.01 0.36 8.00 -51.93 -0.42 -0.05 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 299.99 15.07 4.52 4.52 Total: -1.00 -30.02 299.99 -7.76 -37.78 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.73 Total: -0.96 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 0.20 Total: -16.68 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.34 Total: -35.43 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.38 Total: -6.01 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.02 -7.76 -37.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602449369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.908 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds