Wall clock time and date at job start Sun Mar 29 2020 22:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47099 * 2 1 4 4 H 1.09001 * 109.50270 * 54.78243 * 3 2 1 5 5 C 1.53087 * 109.50655 * 294.64865 * 3 2 1 6 6 O 1.43019 * 109.26202 * 183.21640 * 5 3 2 7 7 C 1.43014 * 113.73567 * 58.66652 * 6 5 3 8 8 C 1.53094 * 109.26051 * 301.33331 * 7 6 5 9 9 N 1.47016 * 109.50502 * 174.86386 * 3 2 1 10 10 C 1.46897 * 111.00088 * 302.32838 * 9 3 2 11 11 C 1.53000 * 109.47447 * 300.03154 * 10 9 3 12 12 H 1.09005 * 109.46883 * 330.99247 * 11 10 9 13 13 C 1.53003 * 109.46820 * 90.98408 * 11 10 9 14 14 C 1.52991 * 109.47438 * 210.98766 * 11 10 9 15 15 C 1.50705 * 109.47160 * 174.99979 * 14 11 10 16 16 H 1.08002 * 119.99804 * 359.97438 * 15 14 11 17 17 C 1.37879 * 119.99941 * 179.97438 * 15 14 11 18 18 N 1.31513 * 119.99988 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99674 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47623 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47062 * 120.00407 * 19 17 15 22 22 H 1.48496 * 109.47011 * 239.99775 * 19 17 15 23 23 H 1.08994 * 109.47088 * 65.49825 * 1 2 3 24 24 H 1.09001 * 109.46864 * 185.50203 * 1 2 3 25 25 H 1.09000 * 109.47180 * 305.49980 * 1 2 3 26 26 H 1.09001 * 109.47427 * 240.00644 * 2 1 3 27 27 H 1.09002 * 109.47391 * 119.99523 * 2 1 3 28 28 H 1.09000 * 109.51068 * 303.15103 * 5 3 2 29 29 H 1.09004 * 109.51313 * 63.23775 * 5 3 2 30 30 H 1.09000 * 109.50640 * 181.40228 * 7 6 5 31 31 H 1.08999 * 109.50998 * 61.27237 * 7 6 5 32 32 H 1.09000 * 109.51080 * 296.91377 * 8 7 6 33 33 H 1.09002 * 109.51250 * 176.78062 * 8 7 6 34 34 H 1.08999 * 109.47536 * 60.03846 * 10 9 3 35 35 H 1.09000 * 109.46892 * 180.02562 * 10 9 3 36 36 H 1.08992 * 109.47568 * 297.94122 * 13 11 10 37 37 H 1.09002 * 109.46958 * 57.94638 * 13 11 10 38 38 H 1.09000 * 109.46863 * 177.94170 * 13 11 10 39 39 H 1.09003 * 109.47055 * 294.99797 * 14 11 10 40 40 H 1.08998 * 109.47151 * 55.00410 * 14 11 10 41 41 H 0.96996 * 119.99831 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6027 1.9832 0.8394 5 6 1.6430 2.1251 -1.3115 6 8 2.1861 3.4479 -1.3382 7 6 3.6108 3.4878 -1.2202 8 6 4.0277 2.8190 0.0923 9 7 3.5049 1.4453 0.1241 10 6 3.9312 0.7478 1.3446 11 6 3.3335 1.4473 2.5670 12 1 3.1920 2.5055 2.3470 13 6 1.9838 0.8126 2.9084 14 6 4.2836 1.2961 3.7565 15 6 3.7553 2.0874 4.9252 16 1 2.8341 2.6429 4.8290 17 6 4.4479 2.1021 6.1173 18 7 5.5699 1.4261 6.2343 19 14 3.7933 3.0835 7.5657 20 1 2.5242 3.7505 7.1788 21 1 3.5433 2.1704 8.7098 22 1 4.7919 4.1093 7.9603 23 1 -0.3633 0.4262 -0.9351 24 1 -0.3633 -1.0230 0.0985 25 1 -0.3633 0.5968 0.8366 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.0354 1.5536 -2.1527 29 1 0.5564 2.1757 -1.3813 30 1 3.9474 4.5245 -1.2234 31 1 4.0605 2.9559 -2.0586 32 1 3.6222 3.3823 0.9327 33 1 5.1154 2.7960 0.1597 34 1 3.5857 -0.2855 1.3121 35 1 5.0190 0.7651 1.4118 36 1 1.2953 0.9525 2.0751 37 1 2.1196 -0.2531 3.0926 38 1 1.5750 1.2864 3.8009 39 1 4.3555 0.2441 4.0327 40 1 5.2708 1.6681 3.4825 41 1 6.0573 1.4368 7.0729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602449369.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:57 Heat of formation + Delta-G solvation = -74.515756 kcal Electronic energy + Delta-G solvation = -18766.036682 eV Core-core repulsion = 16065.698610 eV Total energy + Delta-G solvation = -2700.338071 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.22748 -38.19229 -35.88383 -34.87398 -33.73794 -30.62398 -29.32641 -28.43269 -26.30152 -25.49795 -24.22859 -22.58358 -21.75418 -20.05355 -18.59021 -17.48852 -17.39138 -16.62475 -16.54232 -15.98971 -15.60300 -15.33692 -14.75919 -14.49474 -14.22376 -14.15491 -13.78141 -13.56392 -13.32643 -12.89453 -12.73269 -12.65179 -12.53475 -12.37424 -12.25333 -12.01138 -11.86915 -11.64397 -11.58980 -11.20950 -11.15995 -11.03490 -10.57777 -10.49702 -9.17656 -8.21226 -6.31349 1.35221 1.35853 1.48482 2.37678 2.83006 2.99300 3.11180 3.80997 3.93388 4.00120 4.13481 4.19465 4.24162 4.31424 4.38339 4.43162 4.51242 4.62310 4.70340 4.78553 4.82083 4.86396 4.90853 4.94207 4.94315 5.05917 5.18526 5.24923 5.29253 5.35754 5.40555 5.48801 5.52553 5.72884 5.83777 6.03838 6.09540 6.22595 6.25478 6.84194 7.37133 8.90028 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028532 B = 0.006145 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.107980 B = 4555.384736 C = 4884.933737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C 0.039 3.961 4 H 0.042 0.958 5 C 0.069 3.931 6 O -0.405 6.405 7 C 0.070 3.930 8 C 0.009 3.991 9 N -0.525 5.525 10 C 0.063 3.937 11 C -0.108 4.108 12 H 0.047 0.953 13 C -0.137 4.137 14 C 0.038 3.962 15 C -0.531 4.531 16 H 0.054 0.946 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.958 3.042 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.278 1.278 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.027 0.973 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.035 0.965 39 H -0.008 1.008 40 H -0.015 1.015 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.176 -0.583 -15.742 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.069 4.069 4 H 0.060 0.940 5 C -0.007 4.007 6 O -0.324 6.324 7 C -0.007 4.007 8 C -0.119 4.119 9 N -0.249 5.249 10 C -0.065 4.065 11 C -0.128 4.128 12 H 0.065 0.935 13 C -0.194 4.194 14 C 0.001 3.999 15 C -0.569 4.569 16 H 0.072 0.928 17 C -0.197 4.197 18 N -0.574 5.574 19 Si 0.783 3.217 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.204 1.204 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.010 0.990 40 H 0.004 0.996 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.963 -0.710 -16.073 17.952 hybrid contribution 0.168 0.624 2.130 2.226 sum -7.795 -0.086 -13.944 15.975 Atomic orbital electron populations 1.21809 0.94131 1.02582 1.02263 1.21652 0.96763 0.94172 1.03087 1.22575 0.87875 0.98179 0.98285 0.93998 1.22884 0.99668 0.82581 0.95617 1.87936 1.21706 1.28572 1.94173 1.22731 0.80719 1.01853 0.95396 1.22865 1.01105 0.89546 0.98378 1.62620 1.10381 1.15293 1.36586 1.22304 0.99404 0.98308 0.86497 1.21634 0.96625 0.98668 0.95859 0.93512 1.22080 0.96544 0.99712 1.01035 1.18979 0.93340 0.94915 0.92682 1.21646 1.07985 1.29535 0.97719 0.92795 1.25915 0.95192 0.96778 1.01827 1.70093 1.16985 1.43406 1.26871 0.85500 0.78583 0.78554 0.79052 1.18957 1.20251 1.20374 0.91149 0.91409 0.93306 0.90486 0.91733 0.91539 0.87004 0.87130 0.91259 0.95451 0.89618 0.89690 0.92163 0.90467 0.93447 0.94593 0.98976 0.99639 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.38 71.98 0.68 -2.01 16 2 C -0.12 -2.64 4.31 30.60 0.13 -2.51 16 3 C 0.04 1.03 1.38 44.92 0.06 1.09 16 4 H 0.04 1.31 5.40 -2.39 -0.01 1.29 16 5 C 0.07 1.57 5.97 72.01 0.43 2.00 16 6 O -0.41 -10.85 10.83 -148.98 -1.61 -12.46 16 7 C 0.07 1.67 7.01 72.01 0.50 2.17 16 8 C 0.01 0.28 5.35 86.31 0.46 0.74 16 9 N -0.53 -15.58 4.75 -870.00 -4.13 -19.71 16 10 C 0.06 2.17 4.96 86.30 0.43 2.60 16 11 C -0.11 -4.46 1.72 -10.80 -0.02 -4.48 16 12 H 0.05 2.05 5.57 -2.38 -0.01 2.03 16 13 C -0.14 -5.12 7.44 71.98 0.54 -4.59 16 14 C 0.04 2.04 4.32 29.85 0.13 2.17 16 15 C -0.53 -30.55 8.38 25.60 0.21 -30.34 16 16 H 0.05 3.04 7.06 -2.91 -0.02 3.02 16 17 C 0.00 0.02 5.46 84.66 0.46 0.48 16 18 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 19 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H 0.07 1.02 6.93 -2.39 -0.02 1.01 16 24 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.05 0.96 7.33 -2.39 -0.02 0.94 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.64 4.54 -2.39 -0.01 1.63 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.11 2.09 6.87 -2.38 -0.02 2.08 16 30 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 32 H 0.03 0.95 6.13 -2.39 -0.01 0.94 16 33 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.08 2.75 5.87 -2.39 -0.01 2.74 16 35 H 0.06 2.23 7.72 -2.39 -0.02 2.22 16 36 H 0.08 2.41 3.05 -2.39 -0.01 2.41 16 37 H 0.05 1.72 7.92 -2.39 -0.02 1.70 16 38 H 0.03 1.48 6.89 -2.39 -0.02 1.47 16 39 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 40 H -0.01 -0.85 8.00 -2.39 -0.02 -0.87 16 41 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -65.16 299.99 1.58 -63.58 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 1.00 Total: 11.25 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: 4.02 Total: -32.67 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -3.84 Total: -76.80 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -1.61 Total: -12.46 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -65.16 1.58 -63.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602449369.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.940 kcal (2) G-P(sol) polarization free energy of solvation -65.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds