Wall clock time and date at job start Sun Mar 29 2020 22:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47356 * 2 1 4 4 H 1.09001 * 109.54153 * 303.95101 * 3 2 1 5 5 C 1.53100 * 109.50293 * 64.05483 * 3 2 1 6 6 O 1.43019 * 109.25402 * 176.78514 * 5 3 2 7 7 C 1.43016 * 113.73637 * 301.32781 * 6 5 3 8 8 C 1.53097 * 109.25608 * 58.67534 * 7 6 5 9 9 N 1.47006 * 109.50776 * 183.83919 * 3 2 1 10 10 C 1.46900 * 111.00344 * 57.67318 * 9 3 2 11 11 C 1.52996 * 109.47386 * 191.85545 * 10 9 3 12 12 H 1.09001 * 109.46865 * 304.99404 * 11 10 9 13 13 C 1.52999 * 109.47361 * 64.99874 * 11 10 9 14 14 C 1.53004 * 109.47021 * 185.00177 * 11 10 9 15 15 C 1.50706 * 109.46834 * 174.99788 * 14 11 10 16 16 H 1.07993 * 119.99829 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99675 * 179.97438 * 15 14 11 18 18 N 1.31516 * 119.99588 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00071 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47201 * 89.99491 * 19 17 15 21 21 H 1.48496 * 109.46911 * 209.99756 * 19 17 15 22 22 H 1.48499 * 109.46823 * 329.99725 * 19 17 15 23 23 H 1.08999 * 109.47006 * 62.79412 * 1 2 3 24 24 H 1.09000 * 109.47065 * 182.79943 * 1 2 3 25 25 H 1.08997 * 109.46998 * 302.80159 * 1 2 3 26 26 H 1.09005 * 109.46814 * 240.00387 * 2 1 3 27 27 H 1.08998 * 109.46816 * 120.00625 * 2 1 3 28 28 H 1.09000 * 109.50659 * 56.84820 * 5 3 2 29 29 H 1.08995 * 109.54049 * 296.73935 * 5 3 2 30 30 H 1.09003 * 109.50760 * 298.73698 * 7 6 5 31 31 H 1.09001 * 109.50583 * 178.60716 * 7 6 5 32 32 H 1.09008 * 109.50134 * 183.21270 * 8 7 6 33 33 H 1.09000 * 109.50931 * 63.08974 * 8 7 6 34 34 H 1.09002 * 109.47216 * 71.85477 * 10 9 3 35 35 H 1.08999 * 109.46827 * 311.85480 * 10 9 3 36 36 H 1.09002 * 109.46775 * 60.00007 * 13 11 10 37 37 H 1.08995 * 109.47029 * 299.99819 * 13 11 10 38 38 H 1.09003 * 109.46973 * 179.97438 * 13 11 10 39 39 H 1.09004 * 109.46855 * 294.99251 * 14 11 10 40 40 H 1.08999 * 109.47280 * 54.99506 * 14 11 10 41 41 H 0.96998 * 119.99332 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6208 1.9775 -0.8521 5 6 1.6152 2.1349 1.2977 6 8 2.1578 3.4578 1.3259 7 6 3.5847 3.4968 1.2381 8 6 4.0294 2.8182 -0.0602 9 7 3.5072 1.4444 -0.0928 10 6 3.9595 0.7378 -1.2987 11 6 5.4687 0.5012 -1.2154 12 1 5.9770 1.4516 -1.0523 13 6 5.7732 -0.4460 -0.0531 14 6 5.9602 -0.1220 -2.5234 15 6 7.4621 -0.2418 -2.4896 16 1 8.0110 0.0927 -1.6218 17 6 8.1353 -0.7794 -3.5662 18 7 9.4460 -0.8834 -3.5368 19 14 7.1856 -1.3586 -5.0669 20 1 7.0489 -0.2362 -6.0297 21 1 7.9159 -2.4787 -5.7128 22 1 5.8372 -1.8211 -4.6512 23 1 -0.3633 0.4698 -0.9140 24 1 -0.3633 -1.0264 0.0502 25 1 -0.3633 0.5567 0.8638 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.9895 1.5696 2.1512 29 1 0.5275 2.1865 1.3441 30 1 4.0163 2.9712 2.0899 31 1 3.9213 4.5336 1.2407 32 1 5.1184 2.7949 -0.1041 33 1 3.6421 3.3753 -0.9133 34 1 3.7341 1.3401 -2.1788 35 1 3.4451 -0.2203 -1.3727 36 1 5.2649 -1.3964 -0.2163 37 1 5.4231 -0.0020 0.8787 38 1 6.8484 -0.6149 0.0059 39 1 5.5194 -1.1118 -2.6424 40 1 5.6649 0.5104 -3.3607 41 1 9.9195 -1.2613 -4.2944 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602449370.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:59 Heat of formation + Delta-G solvation = -59.061423 kcal Electronic energy + Delta-G solvation = -18383.399177 eV Core-core repulsion = 15683.731255 eV Total energy + Delta-G solvation = -2699.667921 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.87163 -36.72528 -34.97940 -33.43580 -31.92944 -29.69471 -28.07765 -27.00039 -24.94334 -24.51922 -22.12983 -21.69758 -19.91731 -18.97535 -16.86292 -16.49228 -16.21624 -15.32950 -14.85780 -14.52922 -14.33812 -14.23825 -13.66250 -13.38605 -13.22810 -12.76164 -12.59176 -12.25585 -11.80318 -11.72652 -11.57642 -11.29349 -11.09916 -10.95478 -10.87739 -10.66001 -10.45077 -10.25629 -9.90650 -9.67054 -9.55891 -9.32822 -9.04080 -8.51405 -8.14484 -6.01934 -3.98698 3.30849 3.38529 3.42020 3.79584 3.91880 4.46761 4.71066 4.83773 5.00600 5.07692 5.15927 5.26833 5.30704 5.32267 5.37345 5.52926 5.62454 5.67511 5.72856 5.77684 5.87886 5.89459 5.96508 6.01840 6.11425 6.22221 6.32244 6.40461 6.59890 6.84192 7.01271 7.06458 7.13938 7.22247 7.25777 7.33670 7.50136 7.83093 8.57739 9.03883 9.61118 11.11539 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031076 B = 0.005694 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.796198 B = 4916.130968 C = 5410.180254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.048 3.952 4 H 0.045 0.955 5 C 0.070 3.930 6 O -0.390 6.390 7 C 0.064 3.936 8 C 0.016 3.984 9 N -0.528 5.528 10 C 0.052 3.948 11 C -0.071 4.071 12 H 0.061 0.939 13 C -0.123 4.123 14 C -0.009 4.009 15 C -0.512 4.512 16 H 0.074 0.926 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.877 3.123 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.266 1.266 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.038 0.962 34 H 0.028 0.972 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.043 0.957 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.007 0.993 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.681 4.801 8.459 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.061 4.061 4 H 0.062 0.938 5 C -0.007 4.007 6 O -0.309 6.309 7 C -0.013 4.013 8 C -0.112 4.112 9 N -0.253 5.253 10 C -0.074 4.074 11 C -0.090 4.090 12 H 0.079 0.921 13 C -0.180 4.180 14 C -0.047 4.047 15 C -0.550 4.550 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.544 5.544 19 Si 0.705 3.295 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.191 1.191 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.025 0.975 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.456 4.658 8.782 19.226 hybrid contribution -0.436 -0.165 -1.780 1.840 sum -16.892 4.493 7.002 18.830 Atomic orbital electron populations 1.21818 0.95687 1.01806 1.01718 1.21618 0.95271 0.95446 1.03481 1.22295 0.89025 0.96807 0.97971 0.93754 1.22740 0.98377 0.83287 0.96333 1.87946 1.20977 1.27375 1.94563 1.22686 0.80845 1.00884 0.96870 1.22822 1.01955 0.88994 0.97459 1.62245 1.07636 1.14804 1.40575 1.22474 0.98210 0.97928 0.88834 1.21014 0.91208 0.99275 0.97485 0.92113 1.21578 1.01646 0.97959 0.96848 1.19623 0.97396 0.95411 0.92302 1.21123 0.89784 1.40553 1.03503 0.90832 1.25027 0.94695 0.95472 0.98367 1.69916 1.06919 1.46186 1.31422 0.86816 0.80590 0.78643 0.83437 1.20458 1.21455 1.19104 0.92829 0.92437 0.92612 0.90951 0.90908 0.92405 0.88830 0.92282 0.88714 0.88748 0.94351 0.95398 0.90563 0.94307 0.93760 0.92251 0.96666 0.97476 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.72 37.16 0.36 -0.98 16 2 C -0.12 -1.33 5.27 -26.73 -0.14 -1.47 16 3 C 0.05 0.60 2.07 -67.60 -0.14 0.46 16 4 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 5 C 0.07 0.80 5.94 37.21 0.22 1.02 16 6 O -0.39 -5.13 10.83 -35.23 -0.38 -5.51 16 7 C 0.06 0.77 7.01 37.21 0.26 1.03 16 8 C 0.02 0.22 5.45 -3.71 -0.02 0.20 16 9 N -0.53 -7.61 3.98 -226.35 -0.90 -8.51 16 10 C 0.05 0.86 4.16 -3.83 -0.02 0.85 16 11 C -0.07 -1.39 2.30 -90.62 -0.21 -1.60 16 12 H 0.06 1.23 6.38 -51.93 -0.33 0.90 16 13 C -0.12 -2.34 8.89 37.16 0.33 -2.00 16 14 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 15 C -0.51 -14.44 8.96 -34.43 -0.31 -14.74 16 16 H 0.07 2.23 7.30 -52.49 -0.38 1.84 16 17 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.91 -27.98 13.96 55.43 0.77 -27.20 16 19 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 22 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.43 6.48 -51.93 -0.34 0.10 16 26 H 0.07 0.88 5.93 -51.93 -0.31 0.57 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.89 6.65 -51.93 -0.35 0.55 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.36 6.37 -51.92 -0.33 1.02 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.03 0.47 8.10 -51.93 -0.42 0.05 16 35 H 0.08 1.22 5.61 -51.93 -0.29 0.93 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 38 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 39 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 40 H 0.01 0.17 7.57 -51.93 -0.39 -0.23 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -30.37 309.60 -7.61 -37.98 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -7.25 Total: -2.85 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 0.14 Total: -15.77 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.13 Total: -35.71 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.38 Total: -5.51 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.37 -7.61 -37.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602449370.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.079 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds