Wall clock time and date at job start Sun Mar 29 2020 22:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47194 * 2 1 4 4 H 1.09007 * 109.50450 * 57.10352 * 3 2 1 5 5 C 1.53095 * 109.50625 * 297.01889 * 3 2 1 6 6 O 1.43013 * 109.26141 * 183.21544 * 5 3 2 7 7 C 1.43013 * 113.73569 * 58.66761 * 6 5 3 8 8 C 1.53092 * 109.26033 * 301.33067 * 7 6 5 9 9 N 1.47006 * 109.50652 * 177.23436 * 3 2 1 10 10 C 1.46897 * 111.00370 * 302.32332 * 9 3 2 11 11 C 1.53001 * 109.47602 * 168.18689 * 10 9 3 12 12 H 1.09002 * 109.46627 * 55.00327 * 11 10 9 13 13 C 1.53003 * 109.46912 * 295.00621 * 11 10 9 14 14 C 1.52998 * 109.47417 * 175.00111 * 11 10 9 15 15 C 1.50699 * 109.47259 * 185.00117 * 14 11 10 16 16 H 1.08005 * 120.00039 * 0.02562 * 15 14 11 17 17 C 1.37870 * 120.00091 * 180.02562 * 15 14 11 18 18 N 1.31515 * 119.99917 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00052 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46996 * 90.00370 * 19 17 15 21 21 H 1.48506 * 109.46880 * 210.00466 * 19 17 15 22 22 H 1.48501 * 109.46888 * 330.00519 * 19 17 15 23 23 H 1.09004 * 109.46822 * 185.73384 * 1 2 3 24 24 H 1.08998 * 109.46830 * 305.73292 * 1 2 3 25 25 H 1.08996 * 109.46945 * 65.73338 * 1 2 3 26 26 H 1.08998 * 109.47338 * 239.99404 * 2 1 3 27 27 H 1.09003 * 109.46686 * 119.99546 * 2 1 3 28 28 H 1.09007 * 109.50654 * 303.15120 * 5 3 2 29 29 H 1.09007 * 109.50861 * 63.23684 * 5 3 2 30 30 H 1.09004 * 109.50803 * 61.26669 * 7 6 5 31 31 H 1.08999 * 109.50948 * 181.39588 * 7 6 5 32 32 H 1.09002 * 109.50775 * 176.78353 * 8 7 6 33 33 H 1.09006 * 109.50910 * 296.87077 * 8 7 6 34 34 H 1.08994 * 109.47673 * 288.19208 * 10 9 3 35 35 H 1.09001 * 109.46779 * 48.18794 * 10 9 3 36 36 H 1.08999 * 109.47412 * 60.00133 * 13 11 10 37 37 H 1.09002 * 109.46941 * 179.97438 * 13 11 10 38 38 H 1.08998 * 109.46771 * 299.99196 * 13 11 10 39 39 H 1.08996 * 109.47030 * 305.00483 * 14 11 10 40 40 H 1.09000 * 109.46816 * 65.00139 * 14 11 10 41 41 H 0.97004 * 120.00146 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6352 1.9716 0.8628 5 6 1.5924 2.1430 -1.2856 6 8 2.1344 3.4661 -1.3152 7 6 3.5626 3.5047 -1.2523 8 6 4.0302 2.8181 0.0336 9 7 3.5086 1.4439 0.0669 10 6 3.9820 0.7299 1.2601 11 6 5.4898 0.4948 1.1493 12 1 5.9946 1.4466 0.9835 13 6 5.7745 -0.4447 -0.0243 14 6 6.0042 -0.1365 2.4445 15 6 7.5053 -0.2551 2.3839 16 1 8.0391 0.0861 1.5092 17 6 8.1972 -0.7991 3.4451 18 7 9.5073 -0.9022 3.3924 19 14 7.2741 -1.3887 4.9583 20 1 6.9054 -2.8170 4.7880 21 1 8.1401 -1.2402 6.1555 22 1 6.0428 -0.5773 5.1343 23 1 -0.3633 -1.0226 0.1027 24 1 -0.3633 0.6002 0.8342 25 1 -0.3633 0.4223 -0.9368 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.9516 1.5831 -2.1492 29 1 0.5039 2.1942 -1.3121 30 1 3.9791 2.9844 -2.1149 31 1 3.8992 4.5414 -1.2544 32 1 5.1197 2.7945 0.0582 33 1 3.6585 3.3701 0.8969 34 1 3.7716 1.3263 2.1479 35 1 3.4695 -0.2291 1.3369 36 1 5.4081 0.0051 -0.9471 37 1 6.8487 -0.6118 -0.1036 38 1 5.2697 -1.3964 0.1416 39 1 5.7231 0.4903 3.2908 40 1 5.5660 -1.1272 2.5648 41 1 9.9942 -1.2846 4.1392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602449371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:01 Heat of formation + Delta-G solvation = -59.511798 kcal Electronic energy + Delta-G solvation = -18383.073573 eV Core-core repulsion = 15683.386122 eV Total energy + Delta-G solvation = -2699.687451 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.86952 -36.72452 -34.98043 -33.43479 -31.92930 -29.69583 -28.07499 -26.99975 -24.94011 -24.51750 -22.12896 -21.69937 -19.92007 -18.97213 -16.85917 -16.47924 -16.21736 -15.33788 -14.85326 -14.54252 -14.36000 -14.23512 -13.63956 -13.38695 -13.21885 -12.75480 -12.57657 -12.31018 -11.79493 -11.64481 -11.56169 -11.31382 -11.08683 -10.96970 -10.88044 -10.67170 -10.51317 -10.31912 -9.76547 -9.70190 -9.59506 -9.32012 -9.04264 -8.51526 -8.14541 -6.01874 -3.98715 3.30988 3.38514 3.41915 3.79797 3.92359 4.46758 4.71077 4.82843 5.00703 5.07462 5.16849 5.27206 5.30619 5.32350 5.37070 5.54282 5.62394 5.66847 5.72548 5.77754 5.87981 5.89612 5.96559 6.01841 6.10909 6.22009 6.31931 6.40667 6.59968 6.83308 7.01057 7.06488 7.14345 7.23155 7.25295 7.34275 7.49356 7.83068 8.57709 9.03843 9.61156 11.11576 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031122 B = 0.005691 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.454814 B = 4919.184943 C = 5411.701326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.048 3.952 4 H 0.044 0.956 5 C 0.070 3.930 6 O -0.390 6.390 7 C 0.064 3.936 8 C 0.016 3.984 9 N -0.527 5.527 10 C 0.053 3.947 11 C -0.071 4.071 12 H 0.061 0.939 13 C -0.123 4.123 14 C -0.009 4.009 15 C -0.512 4.512 16 H 0.074 0.926 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.877 3.123 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.267 1.267 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.038 0.962 34 H 0.028 0.972 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.058 0.942 38 H 0.038 0.962 39 H 0.011 0.989 40 H 0.011 0.989 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.823 4.889 -8.122 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.061 4.061 4 H 0.062 0.938 5 C -0.007 4.007 6 O -0.309 6.309 7 C -0.013 4.013 8 C -0.112 4.112 9 N -0.253 5.253 10 C -0.074 4.074 11 C -0.090 4.090 12 H 0.079 0.921 13 C -0.181 4.181 14 C -0.047 4.047 15 C -0.550 4.550 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.544 5.544 19 Si 0.705 3.295 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.192 1.192 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.030 0.970 40 H 0.029 0.971 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.603 4.754 -8.447 19.226 hybrid contribution -0.409 -0.218 1.766 1.826 sum -17.013 4.537 -6.681 18.832 Atomic orbital electron populations 1.21809 0.95681 1.01824 1.01676 1.21614 0.95278 0.95447 1.03462 1.22311 0.89009 0.96772 0.98007 0.93758 1.22730 0.98316 0.83235 0.96427 1.87944 1.20837 1.27344 1.94738 1.22684 0.80755 1.00850 0.96992 1.22821 1.01917 0.88987 0.97511 1.62254 1.07075 1.14527 1.41395 1.22470 0.98072 0.97864 0.89030 1.21016 0.91204 0.99304 0.97458 0.92089 1.21583 1.01647 0.97991 0.96831 1.19617 0.97281 0.95212 0.92612 1.21120 0.89789 1.40298 1.03749 0.90834 1.25022 0.94694 0.95511 0.98325 1.69915 1.06461 1.46041 1.32033 0.86816 0.80167 0.79495 0.83007 1.20365 1.21482 1.19180 0.92449 0.92799 0.92650 0.90871 0.91005 0.92414 0.88852 0.92285 0.88715 0.88753 0.94349 0.95390 0.90582 0.93769 0.92257 0.94304 0.97031 0.97114 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.47 37.16 0.35 -0.98 16 2 C -0.12 -1.33 5.25 -26.73 -0.14 -1.47 16 3 C 0.05 0.60 2.08 -67.61 -0.14 0.46 16 4 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 5 C 0.07 0.80 5.92 37.21 0.22 1.02 16 6 O -0.39 -5.13 10.83 -35.23 -0.38 -5.52 16 7 C 0.06 0.77 7.01 37.21 0.26 1.03 16 8 C 0.02 0.22 5.45 -3.71 -0.02 0.20 16 9 N -0.53 -7.61 3.98 -226.34 -0.90 -8.51 16 10 C 0.05 0.87 4.16 -3.83 -0.02 0.85 16 11 C -0.07 -1.39 2.30 -90.62 -0.21 -1.60 16 12 H 0.06 1.23 6.38 -51.93 -0.33 0.90 16 13 C -0.12 -2.34 8.89 37.16 0.33 -2.01 16 14 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 15 C -0.51 -14.43 8.96 -34.44 -0.31 -14.74 16 16 H 0.07 2.23 7.30 -52.48 -0.38 1.84 16 17 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 18 N -0.91 -27.98 13.96 55.43 0.77 -27.21 16 19 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.43 6.88 -51.93 -0.36 0.07 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.87 5.98 -51.93 -0.31 0.55 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.89 6.81 -51.93 -0.35 0.54 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.36 6.36 -51.93 -0.33 1.03 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.03 0.48 8.10 -51.93 -0.42 0.05 16 35 H 0.08 1.22 5.63 -51.93 -0.29 0.92 16 36 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 37 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 40 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 309.97 15.07 4.67 4.67 Total: -1.00 -30.37 309.97 -7.65 -38.03 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -7.28 Total: -2.91 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 0.13 Total: -15.76 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.13 Total: -35.72 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.38 Total: -5.52 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.37 -7.65 -38.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602449371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.487 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds