Wall clock time and date at job start Sun Mar 29 2020 22:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47194 * 2 1 4 4 H 1.09007 * 109.50450 * 57.10352 * 3 2 1 5 5 C 1.53095 * 109.50625 * 297.01889 * 3 2 1 6 6 O 1.43013 * 109.26141 * 183.21544 * 5 3 2 7 7 C 1.43013 * 113.73569 * 58.66761 * 6 5 3 8 8 C 1.53092 * 109.26033 * 301.33067 * 7 6 5 9 9 N 1.47006 * 109.50652 * 177.23436 * 3 2 1 10 10 C 1.46897 * 111.00370 * 302.32332 * 9 3 2 11 11 C 1.53001 * 109.47602 * 168.18689 * 10 9 3 12 12 H 1.09002 * 109.46627 * 55.00327 * 11 10 9 13 13 C 1.53003 * 109.46912 * 295.00621 * 11 10 9 14 14 C 1.52998 * 109.47417 * 175.00111 * 11 10 9 15 15 C 1.50699 * 109.47259 * 185.00117 * 14 11 10 16 16 H 1.08005 * 120.00039 * 0.02562 * 15 14 11 17 17 C 1.37870 * 120.00091 * 180.02562 * 15 14 11 18 18 N 1.31515 * 119.99917 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 120.00052 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46996 * 90.00370 * 19 17 15 21 21 H 1.48506 * 109.46880 * 210.00466 * 19 17 15 22 22 H 1.48501 * 109.46888 * 330.00519 * 19 17 15 23 23 H 1.09004 * 109.46822 * 185.73384 * 1 2 3 24 24 H 1.08998 * 109.46830 * 305.73292 * 1 2 3 25 25 H 1.08996 * 109.46945 * 65.73338 * 1 2 3 26 26 H 1.08998 * 109.47338 * 239.99404 * 2 1 3 27 27 H 1.09003 * 109.46686 * 119.99546 * 2 1 3 28 28 H 1.09007 * 109.50654 * 303.15120 * 5 3 2 29 29 H 1.09007 * 109.50861 * 63.23684 * 5 3 2 30 30 H 1.09004 * 109.50803 * 61.26669 * 7 6 5 31 31 H 1.08999 * 109.50948 * 181.39588 * 7 6 5 32 32 H 1.09002 * 109.50775 * 176.78353 * 8 7 6 33 33 H 1.09006 * 109.50910 * 296.87077 * 8 7 6 34 34 H 1.08994 * 109.47673 * 288.19208 * 10 9 3 35 35 H 1.09001 * 109.46779 * 48.18794 * 10 9 3 36 36 H 1.08999 * 109.47412 * 60.00133 * 13 11 10 37 37 H 1.09002 * 109.46941 * 179.97438 * 13 11 10 38 38 H 1.08998 * 109.46771 * 299.99196 * 13 11 10 39 39 H 1.08996 * 109.47030 * 305.00483 * 14 11 10 40 40 H 1.09000 * 109.46816 * 65.00139 * 14 11 10 41 41 H 0.97004 * 120.00146 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6352 1.9716 0.8628 5 6 1.5924 2.1430 -1.2856 6 8 2.1344 3.4661 -1.3152 7 6 3.5626 3.5047 -1.2523 8 6 4.0302 2.8181 0.0336 9 7 3.5086 1.4439 0.0669 10 6 3.9820 0.7299 1.2601 11 6 5.4898 0.4948 1.1493 12 1 5.9946 1.4466 0.9835 13 6 5.7745 -0.4447 -0.0243 14 6 6.0042 -0.1365 2.4445 15 6 7.5053 -0.2551 2.3839 16 1 8.0391 0.0861 1.5092 17 6 8.1972 -0.7991 3.4451 18 7 9.5073 -0.9022 3.3924 19 14 7.2741 -1.3887 4.9583 20 1 6.9054 -2.8170 4.7880 21 1 8.1401 -1.2402 6.1555 22 1 6.0428 -0.5773 5.1343 23 1 -0.3633 -1.0226 0.1027 24 1 -0.3633 0.6002 0.8342 25 1 -0.3633 0.4223 -0.9368 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.9516 1.5831 -2.1492 29 1 0.5039 2.1942 -1.3121 30 1 3.9791 2.9844 -2.1149 31 1 3.8992 4.5414 -1.2544 32 1 5.1197 2.7945 0.0582 33 1 3.6585 3.3701 0.8969 34 1 3.7716 1.3263 2.1479 35 1 3.4695 -0.2291 1.3369 36 1 5.4081 0.0051 -0.9471 37 1 6.8487 -0.6118 -0.1036 38 1 5.2697 -1.3964 0.1416 39 1 5.7231 0.4903 3.2908 40 1 5.5660 -1.1272 2.5648 41 1 9.9942 -1.2846 4.1392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602449371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:01 Heat of formation + Delta-G solvation = -79.159626 kcal Electronic energy + Delta-G solvation = -18383.925567 eV Core-core repulsion = 15683.386122 eV Total energy + Delta-G solvation = -2700.539445 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.91846 -38.02141 -36.23669 -34.85496 -33.78972 -30.65136 -29.72462 -28.42999 -26.09511 -25.72262 -23.86516 -22.64105 -21.01894 -20.53002 -18.94356 -17.56222 -17.26527 -16.46024 -16.24475 -16.01226 -15.58987 -15.41185 -15.10874 -14.68631 -14.52846 -14.17853 -13.88082 -13.53949 -13.42289 -12.83701 -12.81355 -12.62084 -12.49134 -12.28050 -12.20258 -12.07681 -11.71884 -11.68990 -11.42150 -11.30557 -11.17748 -10.98959 -10.74251 -10.48698 -9.31412 -8.26728 -6.28952 1.34526 1.36197 1.47678 2.36593 2.75525 2.94836 3.08462 3.76051 3.88078 3.95940 4.12526 4.18137 4.23086 4.33892 4.40977 4.46474 4.48190 4.59155 4.69187 4.76896 4.78752 4.84524 4.86478 4.92299 4.96781 5.04113 5.09002 5.21870 5.28375 5.38348 5.41098 5.41630 5.53744 5.67906 5.72191 6.01673 6.08464 6.21416 6.34336 6.78444 7.34588 8.90021 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031122 B = 0.005691 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.454814 B = 4919.184943 C = 5411.701326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.048 3.952 4 H 0.037 0.963 5 C 0.070 3.930 6 O -0.402 6.402 7 C 0.068 3.932 8 C 0.014 3.986 9 N -0.531 5.531 10 C 0.065 3.935 11 C -0.066 4.066 12 H 0.049 0.951 13 C -0.112 4.112 14 C -0.006 4.006 15 C -0.517 4.517 16 H 0.035 0.965 17 C 0.003 3.997 18 N -0.953 5.953 19 Si 0.946 3.054 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.250 1.250 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.116 0.884 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.032 0.968 34 H 0.023 0.977 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.027 0.973 38 H 0.045 0.955 39 H 0.012 0.988 40 H 0.017 0.983 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.573 4.764 -8.135 21.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.060 4.060 4 H 0.055 0.945 5 C -0.007 4.007 6 O -0.321 6.321 7 C -0.009 4.009 8 C -0.114 4.114 9 N -0.256 5.256 10 C -0.063 4.063 11 C -0.085 4.085 12 H 0.067 0.933 13 C -0.170 4.170 14 C -0.044 4.044 15 C -0.555 4.555 16 H 0.053 0.947 17 C -0.194 4.194 18 N -0.594 5.594 19 Si 0.770 3.230 20 H -0.192 1.192 21 H -0.212 1.212 22 H -0.173 1.173 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.133 0.867 30 H 0.080 0.920 31 H 0.131 0.869 32 H 0.101 0.899 33 H 0.050 0.950 34 H 0.041 0.959 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.030 0.970 40 H 0.036 0.964 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.376 4.638 -8.478 21.652 hybrid contribution 0.498 -0.139 1.686 1.763 sum -18.878 4.499 -6.792 20.560 Atomic orbital electron populations 1.21779 0.93774 1.02544 1.02437 1.21589 0.96923 0.94154 1.02825 1.22405 0.87334 0.97878 0.98393 0.94507 1.22864 0.99564 0.82480 0.95758 1.87935 1.21156 1.28342 1.94670 1.22720 0.80476 1.01794 0.95877 1.22845 1.01264 0.88847 0.98438 1.62223 1.08699 1.14742 1.39971 1.22209 0.95519 0.98694 0.89833 1.20878 0.93550 0.98443 0.95633 0.93283 1.21459 0.99588 0.98379 0.97545 1.19561 0.94209 0.95853 0.94778 1.21422 0.92254 1.39444 1.02384 0.94672 1.25974 0.95521 0.95859 1.02012 1.70070 1.08419 1.47588 1.33370 0.85717 0.79253 0.79544 0.78477 1.19164 1.21162 1.17326 0.91657 0.92745 0.91326 0.90962 0.92113 0.92039 0.86652 0.91987 0.86910 0.89902 0.94951 0.95918 0.89632 0.91823 0.95417 0.93597 0.97002 0.96435 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.47 71.98 0.68 -1.46 16 2 C -0.12 -2.29 5.25 30.60 0.16 -2.13 16 3 C 0.05 1.10 2.08 44.93 0.09 1.19 16 4 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 5 C 0.07 1.41 5.92 72.01 0.43 1.83 16 6 O -0.40 -9.64 10.83 -148.98 -1.61 -11.25 16 7 C 0.07 1.52 7.01 72.01 0.50 2.02 16 8 C 0.01 0.38 5.45 86.31 0.47 0.85 16 9 N -0.53 -14.51 3.98 -870.02 -3.46 -17.97 16 10 C 0.06 2.05 4.16 86.30 0.36 2.41 16 11 C -0.07 -2.58 2.30 -10.79 -0.02 -2.60 16 12 H 0.05 2.02 6.38 -2.39 -0.02 2.00 16 13 C -0.11 -4.23 8.89 71.98 0.64 -3.59 16 14 C -0.01 -0.29 3.52 29.85 0.10 -0.18 16 15 C -0.52 -29.86 8.96 25.60 0.23 -29.63 16 16 H 0.03 2.24 7.30 -2.91 -0.02 2.21 16 17 C 0.00 0.15 5.47 84.65 0.46 0.61 16 18 N -0.95 -60.42 13.96 21.44 0.30 -60.13 16 19 Si 0.95 44.79 27.47 68.60 1.88 46.68 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 22 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.07 0.82 6.88 -2.39 -0.02 0.80 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.32 5.98 -2.39 -0.01 1.31 16 28 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.12 1.81 6.81 -2.38 -0.02 1.79 16 30 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.08 2.37 6.36 -2.39 -0.02 2.36 16 33 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.02 0.74 8.10 -2.39 -0.02 0.72 16 35 H 0.09 2.56 5.63 -2.39 -0.01 2.54 16 36 H 0.06 2.12 7.75 -2.39 -0.02 2.10 16 37 H 0.03 1.19 6.95 -2.39 -0.02 1.17 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 40 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 41 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -65.65 309.97 2.14 -63.52 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 0.92 Total: 9.83 kcal Atomic # 6 Polarization: -34.79 SS G_CDS: 4.11 Total: -30.68 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -3.16 Total: -78.09 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -1.61 Total: -11.25 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.68 kcal Total: -65.65 2.14 -63.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602449371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.644 kcal (2) G-P(sol) polarization free energy of solvation -65.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds