Wall clock time and date at job start Sun Mar 29 2020 22:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46891 * 2 1 4 4 H 1.09001 * 110.27659 * 55.63718 * 3 2 1 5 5 C 1.53994 * 110.31007 * 293.54513 * 3 2 1 6 6 N 1.47898 * 107.05926 * 242.31139 * 5 3 2 7 7 C 1.46904 * 111.00222 * 214.15579 * 6 5 3 8 8 C 1.52992 * 109.47312 * 175.83288 * 7 6 5 9 9 H 1.09007 * 109.47225 * 305.14095 * 8 7 6 10 10 C 1.53003 * 109.47323 * 185.14383 * 8 7 6 11 11 C 1.52995 * 109.47503 * 65.14291 * 8 7 6 12 12 C 1.50697 * 109.47819 * 185.00127 * 11 8 7 13 13 H 1.08004 * 119.99658 * 359.97438 * 12 11 8 14 14 C 1.37874 * 120.00510 * 180.02562 * 12 11 8 15 15 N 1.31511 * 119.99969 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00019 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46854 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47015 * 299.99562 * 16 14 12 19 19 H 1.48497 * 109.47315 * 59.99477 * 16 14 12 20 20 C 1.48534 * 105.82291 * 334.66810 * 6 5 3 21 21 C 1.54603 * 110.31009 * 177.83137 * 3 2 1 22 22 H 1.08999 * 110.72180 * 22.33173 * 21 3 2 23 23 O 1.42900 * 110.72078 * 259.23357 * 21 3 2 24 24 H 1.08998 * 109.46855 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46831 * 299.99912 * 1 2 3 26 26 H 1.08994 * 109.47104 * 60.00180 * 1 2 3 27 27 H 1.08994 * 109.47565 * 240.00062 * 2 1 3 28 28 H 1.08999 * 109.47169 * 119.99348 * 2 1 3 29 29 H 1.09001 * 109.91925 * 122.95444 * 5 3 2 30 30 H 1.08999 * 110.08056 * 1.75142 * 5 3 2 31 31 H 1.09004 * 109.46930 * 55.83043 * 7 6 5 32 32 H 1.09002 * 109.46991 * 295.83201 * 7 6 5 33 33 H 1.08997 * 109.47511 * 174.95350 * 10 8 7 34 34 H 1.08999 * 109.46677 * 294.95085 * 10 8 7 35 35 H 1.08996 * 109.47272 * 54.94990 * 10 8 7 36 36 H 1.09000 * 109.47385 * 64.99566 * 11 8 7 37 37 H 1.09007 * 109.47098 * 304.99965 * 11 8 7 38 38 H 0.97003 * 120.00133 * 179.97438 * 15 14 12 39 39 H 1.08995 * 110.67399 * 157.64542 * 20 6 5 40 40 H 1.09004 * 110.66890 * 280.77692 * 20 6 5 41 41 H 0.96699 * 114.00112 * 179.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6217 1.9910 0.8440 5 6 1.6742 2.1388 -1.3240 6 7 2.9445 2.5029 -1.9881 7 6 2.8086 3.7642 -2.7289 8 6 4.1655 4.1607 -3.3141 9 1 4.9076 4.2005 -2.5166 10 6 4.0535 5.5358 -3.9756 11 6 4.5929 3.1263 -4.3573 12 6 5.9820 3.4485 -4.8446 13 1 6.5073 4.3058 -4.4501 14 6 6.5819 2.6498 -5.7949 15 7 5.9420 1.6062 -6.2757 16 14 8.3041 3.0489 -6.3984 17 1 8.7183 2.0457 -7.4119 18 1 8.3130 4.4022 -7.0099 19 1 9.2496 3.0167 -5.2538 20 6 3.9482 2.6299 -0.9005 21 6 3.5848 1.4656 0.0549 22 1 3.9977 0.5236 -0.3062 23 8 4.0396 1.7393 1.3816 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.0899 3.0366 -1.1223 30 1 1.1046 1.4600 -1.9588 31 1 2.4615 4.5465 -2.0537 32 1 2.0882 3.6354 -3.5366 33 1 5.0385 5.8579 -4.3133 34 1 3.3788 5.4743 -4.8295 35 1 3.6633 6.2548 -3.2553 36 1 3.8987 3.1491 -5.1973 37 1 4.5868 2.1332 -3.9079 38 1 6.3639 1.0445 -6.9445 39 1 4.9577 2.5055 -1.2921 40 1 3.8467 3.5895 -0.3934 41 1 5.0022 1.7643 1.4701 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602494351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:51 Heat of formation + Delta-G solvation = -71.713953 kcal Electronic energy + Delta-G solvation = -18177.387301 eV Core-core repulsion = 15477.170725 eV Total energy + Delta-G solvation = -2700.216576 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.47631 -36.39096 -35.16570 -33.49277 -31.97684 -29.19045 -27.71884 -26.93871 -25.23345 -23.05736 -22.42390 -21.20776 -19.82416 -18.67891 -17.36974 -16.26686 -15.77831 -15.12830 -14.67515 -14.25721 -13.97597 -13.67101 -13.54658 -13.12880 -12.68426 -12.55319 -12.16911 -12.08375 -11.81127 -11.57099 -11.44016 -11.34526 -10.92237 -10.84955 -10.75866 -10.53661 -10.36286 -10.29515 -10.10059 -9.80250 -9.63277 -9.06815 -8.85231 -8.25258 -7.94659 -5.89324 -3.90385 3.36853 3.41704 3.43682 4.00846 4.52671 4.59912 4.64846 4.75160 4.99696 5.21279 5.35670 5.45442 5.45935 5.49380 5.63919 5.67993 5.74575 5.79044 5.87867 5.98375 6.06524 6.08562 6.13930 6.22039 6.25665 6.28733 6.36526 6.41387 6.49542 6.96043 7.03560 7.23646 7.28588 7.50307 7.69270 7.84074 8.04612 8.18522 8.55732 9.17348 9.71965 11.21691 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026625 B = 0.005504 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.379955 B = 5086.173133 C = 5222.331280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.089 4.089 4 H 0.080 0.920 5 C 0.039 3.961 6 N -0.499 5.499 7 C 0.056 3.944 8 C -0.087 4.087 9 H 0.055 0.945 10 C -0.132 4.132 11 C 0.035 3.965 12 C -0.515 4.515 13 H 0.051 0.949 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.885 3.115 17 H -0.288 1.288 18 H -0.279 1.279 19 H -0.279 1.279 20 C 0.008 3.992 21 C 0.100 3.900 22 H 0.074 0.926 23 O -0.568 6.568 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.019 0.981 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.027 0.973 36 H 0.010 0.990 37 H 0.031 0.969 38 H 0.259 0.741 39 H 0.092 0.908 40 H 0.046 0.954 41 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.035 -0.163 12.590 14.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.108 4.108 4 H 0.098 0.902 5 C -0.089 4.089 6 N -0.223 5.223 7 C -0.072 4.072 8 C -0.106 4.106 9 H 0.073 0.927 10 C -0.189 4.189 11 C -0.002 4.002 12 C -0.554 4.554 13 H 0.069 0.931 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.714 3.286 17 H -0.214 1.214 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.120 4.120 21 C 0.040 3.960 22 H 0.092 0.908 23 O -0.373 6.373 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.037 0.963 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.029 0.971 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.065 0.935 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -8.520 -0.683 12.191 14.889 hybrid contribution 1.340 0.878 -0.064 1.604 sum -7.180 0.195 12.127 14.095 Atomic orbital electron populations 1.21799 0.95841 1.01487 1.01795 1.21566 0.95822 0.95444 1.02354 1.21980 0.93905 0.97082 0.97869 0.90172 1.22994 0.93088 0.99009 0.93795 1.64716 1.04679 1.31880 1.21055 1.22456 0.99896 0.88121 0.96700 1.21279 0.93438 0.96589 0.99261 0.92657 1.21691 1.01976 0.96085 0.99185 1.19056 0.95084 0.93873 0.92157 1.21274 1.00931 1.11067 1.22108 0.93079 1.24985 0.97404 0.95242 0.96722 1.69967 1.37475 1.16207 1.29755 0.86775 0.85390 0.77956 0.78521 1.21411 1.20429 1.20431 1.23865 0.98750 0.97361 0.92054 1.22846 0.94376 0.97251 0.81497 0.90816 1.86445 1.27195 1.94719 1.28930 0.92808 0.93019 0.92400 0.91171 0.91935 0.94192 0.89981 0.96295 0.91068 0.92004 0.93432 0.95358 0.97116 0.95037 0.93175 0.89014 0.93540 0.77387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.73 37.16 0.36 -1.13 16 2 C -0.11 -1.30 5.13 -26.73 -0.14 -1.44 16 3 C -0.09 -1.16 2.79 -89.26 -0.25 -1.41 16 4 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 5 C 0.04 0.56 5.89 -2.76 -0.02 0.54 16 6 N -0.50 -8.59 4.73 -230.46 -1.09 -9.68 16 7 C 0.06 1.00 4.22 -3.83 -0.02 0.98 16 8 C -0.09 -1.79 2.16 -90.62 -0.20 -1.98 16 9 H 0.06 1.15 6.63 -51.93 -0.34 0.81 16 10 C -0.13 -2.50 8.92 37.16 0.33 -2.17 16 11 C 0.04 0.91 4.39 -27.89 -0.12 0.79 16 12 C -0.52 -14.49 8.47 -34.44 -0.29 -14.78 16 13 H 0.05 1.40 7.06 -52.48 -0.37 1.03 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 16 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.01 0.13 5.07 -1.90 -0.01 0.12 16 21 C 0.10 1.37 3.98 -24.87 -0.10 1.28 16 22 H 0.07 1.03 7.86 -51.93 -0.41 0.63 16 23 O -0.57 -7.26 13.40 -35.23 -0.47 -7.73 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.57 6.88 -51.93 -0.36 0.21 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.54 7.67 -51.93 -0.40 0.14 16 30 H 0.08 1.14 6.74 -51.93 -0.35 0.79 16 31 H 0.02 0.31 7.97 -51.93 -0.41 -0.10 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.24 7.10 -51.93 -0.37 0.88 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.03 0.88 7.63 -51.92 -0.40 0.48 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.09 1.59 7.54 -51.93 -0.39 1.20 16 40 H 0.05 0.73 8.01 -51.93 -0.42 0.31 16 41 H 0.38 3.39 9.12 45.56 0.42 3.80 16 LS Contribution 320.23 15.07 4.83 4.83 Total: -1.00 -30.95 320.23 -8.30 -39.25 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.74 Total: 0.63 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -0.54 Total: -17.65 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.35 Total: -36.11 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.47 Total: -7.73 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.95 -8.30 -39.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602494351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.462 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds