Wall clock time and date at job start Sun Mar 29 2020 22:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47450 * 2 1 4 4 H 1.09000 * 110.90431 * 51.13478 * 3 2 1 5 5 C 1.54915 * 110.99135 * 287.26826 * 3 2 1 6 6 N 1.47836 * 104.79757 * 204.83627 * 5 3 2 7 7 C 1.46899 * 111.00169 * 146.36506 * 6 5 3 8 8 C 1.52997 * 109.47286 * 55.11699 * 7 6 5 9 9 H 1.08998 * 109.47090 * 303.47566 * 8 7 6 10 10 C 1.53002 * 109.46801 * 63.47185 * 8 7 6 11 11 C 1.53003 * 109.47323 * 183.47352 * 8 7 6 12 12 C 1.50705 * 109.46957 * 175.00170 * 11 8 7 13 13 H 1.08004 * 119.99820 * 359.97438 * 12 11 8 14 14 C 1.37873 * 119.99961 * 180.02562 * 12 11 8 15 15 N 1.31518 * 119.99935 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00241 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.46990 * 59.99893 * 16 14 12 18 18 H 1.48499 * 109.47344 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46789 * 299.99799 * 16 14 12 20 20 C 1.47445 * 108.56899 * 24.09643 * 6 5 3 21 21 C 1.54317 * 107.23021 * 359.01021 * 20 6 5 22 22 H 1.08997 * 110.70667 * 96.27683 * 21 20 6 23 23 O 1.42910 * 110.70392 * 219.33375 * 21 20 6 24 24 H 1.09005 * 109.47037 * 299.99974 * 1 2 3 25 25 H 1.09001 * 109.47295 * 59.99720 * 1 2 3 26 26 H 1.08996 * 109.47271 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47037 * 240.00026 * 2 1 3 28 28 H 1.09001 * 109.47295 * 120.00280 * 2 1 3 29 29 H 1.09002 * 110.37017 * 86.00430 * 5 3 2 30 30 H 1.08996 * 110.37046 * 323.67009 * 5 3 2 31 31 H 1.08996 * 109.47556 * 175.12178 * 7 6 5 32 32 H 1.09004 * 109.46831 * 295.12041 * 7 6 5 33 33 H 1.09005 * 109.47003 * 185.48456 * 10 8 7 34 34 H 1.08996 * 109.47192 * 305.48323 * 10 8 7 35 35 H 1.08999 * 109.47344 * 65.48751 * 10 8 7 36 36 H 1.08993 * 109.46718 * 294.99990 * 11 8 7 37 37 H 1.08996 * 109.46662 * 55.00145 * 11 8 7 38 38 H 0.97000 * 120.00244 * 179.97438 * 15 14 12 39 39 H 1.08998 * 109.89072 * 239.60764 * 20 6 5 40 40 H 1.08996 * 109.89069 * 118.41608 * 20 6 5 41 41 H 0.96693 * 113.99836 * 298.54281 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5673 2.0221 0.7928 5 6 1.8203 2.1088 -1.3811 6 7 2.8410 3.1758 -1.4523 7 6 3.3180 3.3571 -2.8298 8 6 2.1261 3.6221 -3.7516 9 1 1.4115 2.8035 -3.6660 10 6 1.4500 4.9336 -3.3466 11 6 2.6131 3.7249 -5.1984 12 6 1.4278 3.8632 -6.1188 13 1 0.4272 3.8760 -5.7124 14 6 1.6207 3.9722 -7.4796 15 7 2.8392 3.9560 -7.9744 16 14 0.1516 4.1443 -8.6204 17 1 -0.6089 5.3697 -8.2666 18 1 0.6243 4.2439 -10.0247 19 1 -0.7283 2.9567 -8.4769 20 6 3.9527 2.8230 -0.5502 21 6 3.5857 1.4854 0.1261 22 1 4.0416 0.6484 -0.4026 23 8 3.9806 1.4886 1.4996 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.8194 2.5363 -1.4412 30 1 1.9727 1.3838 -2.1807 31 1 4.0028 4.2042 -2.8687 32 1 3.8364 2.4555 -3.1563 33 1 0.5453 5.0738 -3.9384 34 1 1.1901 4.8968 -2.2888 35 1 2.1327 5.7644 -3.5245 36 1 3.2583 4.5970 -5.3034 37 1 3.1720 2.8259 -5.4582 38 1 2.9749 4.0324 -8.9318 39 1 4.0775 3.5986 0.2054 40 1 4.8730 2.7087 -1.1230 41 1 4.9325 1.5909 1.6348 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602494352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:53 Heat of formation + Delta-G solvation = -94.604374 kcal Electronic energy + Delta-G solvation = -18047.282035 eV Core-core repulsion = 15346.072856 eV Total energy + Delta-G solvation = -2701.209179 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.72768 -37.82266 -36.25788 -35.09302 -33.89490 -30.37452 -29.09691 -28.53868 -26.90599 -25.03991 -23.56502 -22.05512 -21.36104 -20.35563 -18.51244 -18.23847 -16.78123 -16.60649 -16.41336 -16.05067 -15.13143 -14.92861 -14.68157 -14.54091 -14.12391 -14.00977 -13.73099 -13.50021 -13.29314 -12.94299 -12.78907 -12.69983 -12.63601 -12.33411 -12.22496 -11.95759 -11.87628 -11.55518 -11.46354 -11.31204 -11.15234 -11.03943 -10.82096 -10.52718 -9.23715 -8.17306 -6.26513 1.40344 1.42988 1.50632 2.42153 2.93658 3.16196 3.24960 3.54726 3.64349 4.01229 4.11959 4.19345 4.27414 4.32095 4.41708 4.51168 4.55446 4.56880 4.65481 4.85390 4.87174 4.89946 4.97811 4.99913 5.04794 5.13739 5.16805 5.28098 5.34085 5.44609 5.45303 5.47965 5.53868 5.78786 5.87990 6.04732 6.07168 6.31292 6.84678 6.88869 7.41811 8.94597 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031391 B = 0.005033 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.748393 B = 5562.269818 C = 6037.188934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C -0.084 4.084 4 H 0.085 0.915 5 C 0.050 3.950 6 N -0.528 5.528 7 C 0.067 3.933 8 C -0.074 4.074 9 H 0.055 0.945 10 C -0.113 4.113 11 C 0.033 3.967 12 C -0.529 4.529 13 H 0.060 0.940 14 C -0.001 4.001 15 N -0.935 5.935 16 Si 0.960 3.040 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.267 1.267 20 C 0.010 3.990 21 C 0.092 3.908 22 H 0.069 0.931 23 O -0.569 6.569 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.023 0.977 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.035 0.965 36 H -0.010 1.010 37 H -0.014 1.014 38 H 0.262 0.738 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.070 -6.310 17.460 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.103 4.103 4 H 0.104 0.896 5 C -0.077 4.077 6 N -0.253 5.253 7 C -0.061 4.061 8 C -0.093 4.093 9 H 0.073 0.927 10 C -0.171 4.171 11 C -0.004 4.004 12 C -0.567 4.567 13 H 0.078 0.922 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.785 3.215 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.192 1.192 20 C -0.119 4.119 21 C 0.032 3.968 22 H 0.086 0.914 23 O -0.376 6.376 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.009 0.991 37 H 0.004 0.996 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -0.674 -5.892 17.553 18.528 hybrid contribution 0.674 -0.411 -1.551 1.741 sum 0.000 -6.302 16.002 17.198 Atomic orbital electron populations 1.21767 0.94919 1.02219 1.01959 1.21446 0.96760 0.94279 1.02168 1.22319 0.93700 0.97401 0.96859 0.89648 1.23075 0.96873 0.91896 0.95878 1.63550 1.11440 1.43213 1.07088 1.22258 0.96880 0.99434 0.87492 1.21065 0.96018 0.98224 0.94000 0.92651 1.21485 0.99387 0.95998 1.00189 1.19012 0.95299 0.94378 0.91743 1.21588 0.93822 1.49175 0.92125 0.92183 1.25931 0.98516 0.95122 1.00235 1.70093 1.22463 1.51942 1.13115 0.85579 0.79369 0.79145 0.77448 1.19272 1.20995 1.19229 1.23620 0.93705 0.97703 0.96835 1.23033 0.95483 0.95652 0.82592 0.91359 1.86476 1.30691 1.96365 1.24067 0.92302 0.93090 0.91762 0.92138 0.91072 0.90232 0.93964 0.91450 0.95846 0.94275 0.91611 0.94618 0.99132 0.99613 0.92939 0.89466 0.92103 0.75490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.81 71.98 0.71 -2.06 16 2 C -0.11 -2.13 5.45 30.59 0.17 -1.97 16 3 C -0.08 -1.89 2.72 -9.41 -0.03 -1.92 16 4 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 5 C 0.05 1.37 4.22 86.78 0.37 1.74 16 6 N -0.53 -15.51 4.57 -885.57 -4.04 -19.55 16 7 C 0.07 2.36 4.00 86.30 0.35 2.70 16 8 C -0.07 -3.07 2.10 -10.79 -0.02 -3.10 16 9 H 0.06 2.30 6.68 -2.39 -0.02 2.28 16 10 C -0.11 -4.41 8.85 71.98 0.64 -3.78 16 11 C 0.03 1.76 4.45 29.85 0.13 1.89 16 12 C -0.53 -30.05 8.48 25.60 0.22 -29.83 16 13 H 0.06 3.28 7.06 -2.91 -0.02 3.26 16 14 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 15 N -0.94 -57.35 13.29 21.45 0.28 -57.06 16 16 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 20 C 0.01 0.23 6.67 86.65 0.58 0.80 16 21 C 0.09 1.95 3.79 31.77 0.12 2.07 16 22 H 0.07 1.37 8.04 -2.39 -0.02 1.35 16 23 O -0.57 -10.85 13.39 -148.98 -1.99 -12.84 16 24 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.05 1.01 7.75 -2.39 -0.02 0.99 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 27 H 0.06 1.21 7.96 -2.38 -0.02 1.19 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.04 1.24 7.17 -2.39 -0.02 1.22 16 31 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.02 0.84 8.12 -2.38 -0.02 0.82 16 33 H 0.04 1.59 7.12 -2.38 -0.02 1.58 16 34 H 0.06 2.26 7.55 -2.39 -0.02 2.24 16 35 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 36 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 37 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 38 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.09 1.99 8.06 -2.39 -0.02 1.97 16 40 H 0.06 1.38 7.57 -2.39 -0.02 1.36 16 41 H 0.40 4.08 9.11 -74.06 -0.67 3.40 16 Total: -1.00 -64.93 321.88 0.26 -64.68 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.30 Total: 11.22 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: 3.68 Total: -33.03 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -3.76 Total: -76.61 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -1.99 Total: -12.84 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -64.93 0.26 -64.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602494352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.925 kcal (2) G-P(sol) polarization free energy of solvation -64.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds