Wall clock time and date at job start Sun Mar 29 2020 22:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47563 * 2 1 4 4 H 1.08997 * 110.28389 * 54.29699 * 3 2 1 5 5 C 1.54381 * 110.31958 * 292.17641 * 3 2 1 6 6 N 1.48726 * 104.51530 * 217.31997 * 5 3 2 7 7 C 1.46894 * 111.01916 * 158.96632 * 6 5 3 8 8 C 1.52997 * 109.47549 * 168.93167 * 7 6 5 9 9 H 1.08997 * 109.46975 * 54.66378 * 8 7 6 10 10 C 1.52993 * 109.47232 * 174.66600 * 8 7 6 11 11 C 1.53001 * 109.46875 * 294.66482 * 8 7 6 12 12 C 1.50706 * 109.46712 * 174.99711 * 11 8 7 13 13 H 1.08000 * 120.00192 * 359.97438 * 12 11 8 14 14 C 1.37884 * 119.99704 * 179.97438 * 12 11 8 15 15 N 1.31510 * 119.99774 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99884 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47304 * 89.99887 * 16 14 12 18 18 H 1.48502 * 109.46813 * 210.00087 * 16 14 12 19 19 H 1.48503 * 109.47067 * 329.99547 * 16 14 12 20 20 C 1.48558 * 104.28611 * 39.35927 * 6 5 3 21 21 C 1.54258 * 110.32550 * 176.42837 * 3 2 1 22 22 H 1.09004 * 110.32221 * 237.78908 * 21 3 2 23 23 O 1.42894 * 110.32399 * 359.89519 * 21 3 2 24 24 H 1.09001 * 109.47506 * 59.99851 * 1 2 3 25 25 H 1.09000 * 109.46720 * 300.00254 * 1 2 3 26 26 H 1.08996 * 109.47696 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47506 * 120.00149 * 2 1 3 28 28 H 1.09000 * 109.47175 * 240.00024 * 2 1 3 29 29 H 1.08998 * 110.41175 * 336.02361 * 5 3 2 30 30 H 1.08994 * 110.41373 * 98.47325 * 5 3 2 31 31 H 1.09000 * 109.47120 * 288.93510 * 7 6 5 32 32 H 1.09003 * 109.47068 * 48.93022 * 7 6 5 33 33 H 1.08999 * 109.47222 * 65.21961 * 10 8 7 34 34 H 1.09000 * 109.47406 * 185.21788 * 10 8 7 35 35 H 1.09004 * 109.47601 * 305.21633 * 10 8 7 36 36 H 1.08995 * 109.47248 * 294.99493 * 11 8 7 37 37 H 1.09004 * 109.46946 * 55.00021 * 11 8 7 38 38 H 0.96998 * 119.99608 * 179.97438 * 15 14 12 39 39 H 1.09005 * 110.41285 * 201.79698 * 20 6 5 40 40 H 1.09006 * 110.41338 * 79.35723 * 20 6 5 41 41 H 0.96703 * 113.99852 * 179.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6035 1.9977 0.8302 5 6 1.7036 2.1301 -1.3406 6 7 2.8839 2.9889 -1.6256 7 6 2.9625 3.3191 -3.0548 8 6 4.0103 4.4132 -3.2688 9 1 4.9601 4.0958 -2.8384 10 6 4.1878 4.6634 -4.7676 11 6 3.5475 5.7027 -2.5877 12 6 4.6324 6.7434 -2.6925 13 1 5.5595 6.5084 -3.1942 14 6 4.4415 7.9957 -2.1478 15 7 5.3884 8.9037 -2.2388 16 14 2.8382 8.4018 -1.2794 17 1 2.9570 8.0654 0.1621 18 1 2.5485 9.8508 -1.4274 19 1 1.7346 7.6123 -1.8828 20 6 4.0466 2.1656 -1.2047 21 6 3.5798 1.4663 0.0901 22 1 3.8992 2.0348 0.9636 23 8 4.0941 0.1345 0.1505 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.5760 1.3868 -2.1276 30 1 0.8043 2.7379 -1.2410 31 1 3.2455 2.4299 -3.6181 32 1 1.9912 3.6738 -3.3997 33 1 3.2640 5.0690 -5.1802 34 1 4.9985 5.3750 -4.9238 35 1 4.4273 3.7245 -5.2669 36 1 2.6448 6.0683 -3.0772 37 1 3.3357 5.5030 -1.5373 38 1 5.2539 9.7847 -1.8560 39 1 4.9094 2.8007 -1.0039 40 1 4.2867 1.4274 -1.9700 41 1 5.0583 0.0874 0.2080 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602494354.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:55 Heat of formation + Delta-G solvation = -67.972086 kcal Electronic energy + Delta-G solvation = -18211.802732 eV Core-core repulsion = 15511.748416 eV Total energy + Delta-G solvation = -2700.054316 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.59227 -36.52382 -35.05279 -33.58376 -32.01931 -29.36367 -27.82543 -27.52598 -25.30072 -22.92106 -22.30053 -21.21489 -19.94620 -18.69058 -17.32179 -16.68262 -16.08722 -15.03608 -14.65011 -14.46939 -13.99952 -13.80388 -13.50942 -13.16155 -12.89203 -12.62364 -12.23476 -12.19506 -11.97549 -11.74829 -11.59649 -11.33968 -10.99491 -10.92435 -10.85755 -10.56130 -10.40540 -10.22594 -9.88739 -9.83352 -9.57965 -9.36495 -8.93846 -8.42756 -8.14768 -5.93995 -3.89419 3.39721 3.46027 3.52561 3.94864 4.46502 4.56055 4.57901 4.70223 4.86189 5.16273 5.23734 5.38479 5.41185 5.42808 5.50758 5.58901 5.68654 5.76538 5.80548 5.93035 5.97120 5.98625 6.01509 6.10961 6.18416 6.22528 6.28383 6.35781 6.43701 6.83376 6.96780 7.06399 7.14343 7.34033 7.52695 7.58757 7.68846 7.94273 8.66239 9.11915 9.70481 11.19738 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026467 B = 0.005894 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.665690 B = 4749.105079 C = 5008.488781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.100 4.100 3 C -0.086 4.086 4 H 0.085 0.915 5 C 0.036 3.964 6 N -0.498 5.498 7 C 0.051 3.949 8 C -0.072 4.072 9 H 0.059 0.941 10 C -0.133 4.133 11 C -0.002 4.002 12 C -0.511 4.511 13 H 0.069 0.931 14 C 0.064 3.936 15 N -0.910 5.910 16 Si 0.879 3.121 17 H -0.278 1.278 18 H -0.292 1.292 19 H -0.266 1.266 20 C 0.004 3.996 21 C 0.101 3.899 22 H 0.068 0.932 23 O -0.563 6.563 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.030 0.970 36 H 0.009 0.991 37 H 0.026 0.974 38 H 0.260 0.740 39 H 0.087 0.913 40 H 0.049 0.951 41 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.736 -17.604 3.353 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.138 4.138 3 C -0.105 4.105 4 H 0.103 0.897 5 C -0.092 4.092 6 N -0.222 5.222 7 C -0.077 4.077 8 C -0.091 4.091 9 H 0.078 0.922 10 C -0.191 4.191 11 C -0.039 4.039 12 C -0.549 4.549 13 H 0.088 0.912 14 C -0.136 4.136 15 N -0.550 5.550 16 Si 0.707 3.293 17 H -0.204 1.204 18 H -0.218 1.218 19 H -0.190 1.190 20 C -0.125 4.125 21 C 0.041 3.959 22 H 0.086 0.914 23 O -0.368 6.368 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.027 0.973 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.364 -17.054 3.638 18.929 hybrid contribution -0.102 -0.099 -0.018 0.143 sum -7.466 -17.152 3.619 19.054 Atomic orbital electron populations 1.21847 0.96340 1.01265 1.01782 1.21244 0.94529 0.95291 1.02712 1.22006 0.93284 0.96821 0.98370 0.89702 1.23241 0.95378 0.94959 0.95592 1.65363 1.01202 1.36639 1.18988 1.22479 1.00938 0.97737 0.86531 1.20977 0.96772 0.95689 0.95619 0.92211 1.21704 1.02160 0.99639 0.95617 1.19541 0.96318 0.91928 0.96153 1.21230 1.02041 0.95814 1.35855 0.91243 1.25010 0.96289 0.96395 0.95916 1.69925 1.33310 1.04975 1.46750 0.86779 0.85114 0.76940 0.80428 1.20428 1.21815 1.19023 1.23850 0.96008 0.95995 0.96658 1.22567 0.94167 0.82387 0.96764 0.91444 1.86520 1.26059 1.27193 1.97017 0.92765 0.92855 0.93031 0.91487 0.91942 0.93931 0.90144 0.95641 0.91297 0.93539 0.91485 0.95112 0.97295 0.95523 0.93004 0.89427 0.93309 0.77739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.77 37.15 0.36 -1.09 16 2 C -0.10 -1.08 4.36 -26.73 -0.12 -1.20 16 3 C -0.09 -1.04 3.07 -89.23 -0.27 -1.32 16 4 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 5 C 0.04 0.49 5.20 -2.09 -0.01 0.48 16 6 N -0.50 -8.03 4.72 -229.83 -1.08 -9.12 16 7 C 0.05 0.86 4.23 -3.83 -0.02 0.84 16 8 C -0.07 -1.43 2.40 -90.62 -0.22 -1.65 16 9 H 0.06 1.23 7.32 -51.93 -0.38 0.85 16 10 C -0.13 -2.49 8.92 37.15 0.33 -2.16 16 11 C 0.00 -0.05 3.46 -27.88 -0.10 -0.15 16 12 C -0.51 -14.66 9.03 -34.43 -0.31 -14.97 16 13 H 0.07 2.13 7.31 -52.49 -0.38 1.75 16 14 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 15 N -0.91 -28.52 13.96 55.43 0.77 -27.75 16 16 Si 0.88 22.50 27.47 -169.99 -4.67 17.83 16 17 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 19 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16 20 C 0.00 0.05 5.68 -2.18 -0.01 0.04 16 21 C 0.10 1.24 4.39 -25.35 -0.11 1.13 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 23 O -0.56 -6.19 11.55 -35.23 -0.41 -6.59 16 24 H 0.05 0.51 7.53 -51.93 -0.39 0.12 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.74 7.74 -51.93 -0.40 0.34 16 28 H 0.06 0.73 7.90 -51.93 -0.41 0.32 16 29 H 0.04 0.55 7.63 -51.93 -0.40 0.16 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.03 0.39 7.74 -51.93 -0.40 -0.01 16 32 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.38 7.11 -51.93 -0.37 1.02 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.01 0.22 7.20 -51.93 -0.37 -0.15 16 37 H 0.03 0.66 7.06 -51.93 -0.37 0.30 16 38 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.09 1.32 7.75 -51.93 -0.40 0.92 16 40 H 0.05 0.67 7.68 -51.93 -0.40 0.28 16 41 H 0.38 2.73 9.12 45.56 0.42 3.14 16 LS Contribution 316.89 15.07 4.78 4.78 Total: -1.00 -31.70 316.89 -7.99 -39.69 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.81 Total: -0.57 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -0.57 Total: -18.26 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.31 Total: -36.87 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.41 Total: -6.59 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.67 Total: 17.83 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.70 -7.99 -39.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602494354.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.286 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds