Wall clock time and date at job start Sun Mar 29 2020 22:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47563 * 2 1 4 4 H 1.08997 * 110.28389 * 54.29699 * 3 2 1 5 5 C 1.54381 * 110.31958 * 292.17641 * 3 2 1 6 6 N 1.48726 * 104.51530 * 217.31997 * 5 3 2 7 7 C 1.46894 * 111.01916 * 158.96632 * 6 5 3 8 8 C 1.52997 * 109.47549 * 168.93167 * 7 6 5 9 9 H 1.08997 * 109.46975 * 54.66378 * 8 7 6 10 10 C 1.52993 * 109.47232 * 174.66600 * 8 7 6 11 11 C 1.53001 * 109.46875 * 294.66482 * 8 7 6 12 12 C 1.50706 * 109.46712 * 174.99711 * 11 8 7 13 13 H 1.08000 * 120.00192 * 359.97438 * 12 11 8 14 14 C 1.37884 * 119.99704 * 179.97438 * 12 11 8 15 15 N 1.31510 * 119.99774 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99884 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47304 * 89.99887 * 16 14 12 18 18 H 1.48502 * 109.46813 * 210.00087 * 16 14 12 19 19 H 1.48503 * 109.47067 * 329.99547 * 16 14 12 20 20 C 1.48558 * 104.28611 * 39.35927 * 6 5 3 21 21 C 1.54258 * 110.32550 * 176.42837 * 3 2 1 22 22 H 1.09004 * 110.32221 * 237.78908 * 21 3 2 23 23 O 1.42894 * 110.32399 * 359.89519 * 21 3 2 24 24 H 1.09001 * 109.47506 * 59.99851 * 1 2 3 25 25 H 1.09000 * 109.46720 * 300.00254 * 1 2 3 26 26 H 1.08996 * 109.47696 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47506 * 120.00149 * 2 1 3 28 28 H 1.09000 * 109.47175 * 240.00024 * 2 1 3 29 29 H 1.08998 * 110.41175 * 336.02361 * 5 3 2 30 30 H 1.08994 * 110.41373 * 98.47325 * 5 3 2 31 31 H 1.09000 * 109.47120 * 288.93510 * 7 6 5 32 32 H 1.09003 * 109.47068 * 48.93022 * 7 6 5 33 33 H 1.08999 * 109.47222 * 65.21961 * 10 8 7 34 34 H 1.09000 * 109.47406 * 185.21788 * 10 8 7 35 35 H 1.09004 * 109.47601 * 305.21633 * 10 8 7 36 36 H 1.08995 * 109.47248 * 294.99493 * 11 8 7 37 37 H 1.09004 * 109.46946 * 55.00021 * 11 8 7 38 38 H 0.96998 * 119.99608 * 179.97438 * 15 14 12 39 39 H 1.09005 * 110.41285 * 201.79698 * 20 6 5 40 40 H 1.09006 * 110.41338 * 79.35723 * 20 6 5 41 41 H 0.96703 * 113.99852 * 179.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6035 1.9977 0.8302 5 6 1.7036 2.1301 -1.3406 6 7 2.8839 2.9889 -1.6256 7 6 2.9625 3.3191 -3.0548 8 6 4.0103 4.4132 -3.2688 9 1 4.9601 4.0958 -2.8384 10 6 4.1878 4.6634 -4.7676 11 6 3.5475 5.7027 -2.5877 12 6 4.6324 6.7434 -2.6925 13 1 5.5595 6.5084 -3.1942 14 6 4.4415 7.9957 -2.1478 15 7 5.3884 8.9037 -2.2388 16 14 2.8382 8.4018 -1.2794 17 1 2.9570 8.0654 0.1621 18 1 2.5485 9.8508 -1.4274 19 1 1.7346 7.6123 -1.8828 20 6 4.0466 2.1656 -1.2047 21 6 3.5798 1.4663 0.0901 22 1 3.8992 2.0348 0.9636 23 8 4.0941 0.1345 0.1505 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.5760 1.3868 -2.1276 30 1 0.8043 2.7379 -1.2410 31 1 3.2455 2.4299 -3.6181 32 1 1.9912 3.6738 -3.3997 33 1 3.2640 5.0690 -5.1802 34 1 4.9985 5.3750 -4.9238 35 1 4.4273 3.7245 -5.2669 36 1 2.6448 6.0683 -3.0772 37 1 3.3357 5.5030 -1.5373 38 1 5.2539 9.7847 -1.8560 39 1 4.9094 2.8007 -1.0039 40 1 4.2867 1.4274 -1.9700 41 1 5.0583 0.0874 0.2080 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602494354.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:54 Heat of formation + Delta-G solvation = -90.420569 kcal Electronic energy + Delta-G solvation = -18212.776171 eV Core-core repulsion = 15511.748416 eV Total energy + Delta-G solvation = -2701.027756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.65034 -37.82842 -36.20992 -34.92174 -33.95358 -30.56971 -29.41639 -28.80812 -26.56189 -24.53170 -23.52165 -22.42486 -21.03533 -20.18501 -18.90038 -18.22212 -17.17869 -16.49528 -15.97769 -15.61603 -15.46179 -15.05315 -14.95348 -14.45033 -14.19910 -14.02729 -13.71332 -13.54173 -13.18341 -12.92857 -12.83393 -12.73937 -12.61223 -12.42771 -11.95084 -11.81604 -11.77229 -11.52934 -11.43065 -11.30980 -11.11136 -10.96451 -10.82111 -10.69122 -9.35151 -8.23447 -6.23810 1.37576 1.38011 1.51281 2.40480 2.91814 3.13108 3.49301 3.58490 3.70653 3.93245 4.11454 4.25135 4.27050 4.36788 4.49055 4.51310 4.58744 4.65096 4.65703 4.75486 4.82248 4.86760 4.93138 4.98247 5.06685 5.12241 5.14880 5.25406 5.34933 5.39152 5.46020 5.52940 5.59121 5.72196 5.78784 5.94682 6.14411 6.38454 6.83727 6.86716 7.39686 8.93521 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026467 B = 0.005894 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.665690 B = 4749.105079 C = 5008.488781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 C -0.086 4.086 4 H 0.087 0.913 5 C 0.040 3.960 6 N -0.524 5.524 7 C 0.062 3.938 8 C -0.069 4.069 9 H 0.046 0.954 10 C -0.129 4.129 11 C 0.007 3.993 12 C -0.515 4.515 13 H 0.032 0.968 14 C 0.003 3.997 15 N -0.956 5.956 16 Si 0.947 3.053 17 H -0.271 1.271 18 H -0.287 1.287 19 H -0.250 1.250 20 C 0.006 3.994 21 C 0.107 3.893 22 H 0.067 0.933 23 O -0.566 6.566 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.035 0.965 35 H 0.063 0.937 36 H 0.008 0.992 37 H 0.022 0.978 38 H 0.263 0.737 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.765 -19.296 3.850 21.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.129 4.129 3 C -0.105 4.105 4 H 0.105 0.895 5 C -0.088 4.088 6 N -0.249 5.249 7 C -0.066 4.066 8 C -0.088 4.088 9 H 0.065 0.935 10 C -0.187 4.187 11 C -0.031 4.031 12 C -0.554 4.554 13 H 0.051 0.949 14 C -0.193 4.193 15 N -0.598 5.598 16 Si 0.771 3.229 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.174 1.174 20 C -0.123 4.123 21 C 0.047 3.953 22 H 0.085 0.915 23 O -0.373 6.373 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.026 0.974 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -9.386 -18.774 4.132 21.392 hybrid contribution 0.649 0.398 -0.203 0.788 sum -8.737 -18.375 3.929 20.722 Atomic orbital electron populations 1.21829 0.95163 1.02018 1.01988 1.21155 0.95479 0.94120 1.02153 1.22030 0.93127 0.97572 0.97772 0.89511 1.23253 0.94317 0.94789 0.96396 1.65283 1.02788 1.38336 1.18450 1.22271 0.99701 0.97080 0.87586 1.20875 0.97272 0.94835 0.95780 0.93549 1.21632 1.01243 1.00567 0.95217 1.19425 0.94586 0.92728 0.96352 1.21560 1.01955 0.97123 1.34717 0.94923 1.25933 1.00077 0.96332 0.96954 1.70074 1.35749 1.05614 1.48352 0.85705 0.80808 0.76989 0.79376 1.19604 1.21308 1.17356 1.23817 0.95012 0.95660 0.97777 1.22429 0.94437 0.82771 0.95647 0.91532 1.86492 1.27748 1.26228 1.96872 0.92746 0.92456 0.92054 0.91720 0.92732 0.93177 0.89934 0.93720 0.90854 0.93030 0.94577 0.91805 0.97391 0.95948 0.92829 0.91145 0.92850 0.75874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.77 71.98 0.70 -1.76 16 2 C -0.09 -1.76 4.36 30.59 0.13 -1.62 16 3 C -0.09 -1.90 3.07 -9.90 -0.03 -1.93 16 4 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 5 C 0.04 0.98 5.20 86.42 0.45 1.42 16 6 N -0.52 -15.94 4.72 -881.05 -4.15 -20.10 16 7 C 0.06 1.93 4.23 86.30 0.36 2.30 16 8 C -0.07 -2.69 2.40 -10.80 -0.03 -2.71 16 9 H 0.05 1.92 7.32 -2.39 -0.02 1.90 16 10 C -0.13 -4.71 8.92 71.98 0.64 -4.07 16 11 C 0.01 0.31 3.46 29.85 0.10 0.42 16 12 C -0.52 -30.22 9.03 25.60 0.23 -29.99 16 13 H 0.03 2.09 7.31 -2.91 -0.02 2.07 16 14 C 0.00 0.16 5.47 84.66 0.46 0.63 16 15 N -0.96 -61.38 13.96 21.45 0.30 -61.08 16 16 Si 0.95 46.26 27.47 68.60 1.88 48.14 16 17 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 19 H -0.25 -11.48 6.54 99.48 0.65 -10.83 16 20 C 0.01 0.16 5.68 86.45 0.49 0.65 16 21 C 0.11 2.45 4.39 31.49 0.14 2.58 16 22 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 23 O -0.57 -11.25 11.55 -148.98 -1.72 -12.97 16 24 H 0.05 0.87 7.53 -2.39 -0.02 0.86 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 1.29 7.74 -2.39 -0.02 1.27 16 28 H 0.05 1.14 7.90 -2.39 -0.02 1.12 16 29 H 0.05 1.15 7.63 -2.39 -0.02 1.13 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.24 7.74 -2.39 -0.02 1.22 16 32 H 0.07 2.23 8.07 -2.39 -0.02 2.22 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.04 1.51 7.11 -2.39 -0.02 1.49 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.01 0.38 7.20 -2.39 -0.02 0.36 16 37 H 0.02 1.09 7.06 -2.38 -0.02 1.07 16 38 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 39 H 0.07 2.11 7.75 -2.38 -0.02 2.09 16 40 H 0.05 1.38 7.68 -2.38 -0.02 1.36 16 41 H 0.39 4.90 9.12 -74.06 -0.68 4.23 16 Total: -1.00 -68.14 316.89 0.22 -67.92 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.25 Total: 12.17 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: 3.66 Total: -34.09 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -3.86 Total: -81.18 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -1.72 Total: -12.97 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.88 Total: 48.14 kcal Total: -68.14 0.22 -67.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602494354.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.503 kcal (2) G-P(sol) polarization free energy of solvation -68.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds