Wall clock time and date at job start Sun Mar 29 2020 22:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47125 * 2 1 4 4 H 1.09001 * 110.64322 * 51.85407 * 3 2 1 5 5 C 1.54932 * 110.87852 * 288.59203 * 3 2 1 6 6 N 1.48527 * 103.22824 * 204.15886 * 5 3 2 7 7 C 1.46899 * 111.00560 * 159.72079 * 6 5 3 8 8 C 1.52991 * 109.47550 * 176.93601 * 7 6 5 9 9 H 1.09004 * 109.47081 * 55.68648 * 8 7 6 10 10 C 1.52994 * 109.47567 * 295.68678 * 8 7 6 11 11 C 1.53006 * 109.47261 * 175.68378 * 8 7 6 12 12 C 1.50703 * 109.46920 * 185.00305 * 11 8 7 13 13 H 1.07995 * 120.00379 * 0.02562 * 12 11 8 14 14 C 1.37879 * 119.99522 * 180.02562 * 12 11 8 15 15 N 1.31514 * 120.00077 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99769 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47359 * 59.99879 * 16 14 12 18 18 H 1.48501 * 109.47048 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47073 * 299.99539 * 16 14 12 20 20 C 1.47898 * 105.82141 * 39.20374 * 6 5 3 21 21 C 1.53994 * 107.06007 * 334.67535 * 20 6 5 22 22 H 1.09003 * 110.30822 * 242.30761 * 21 20 6 23 23 O 1.42895 * 110.31217 * 120.23826 * 21 20 6 24 24 H 1.09001 * 109.46908 * 299.99808 * 1 2 3 25 25 H 1.08999 * 109.47359 * 59.99698 * 1 2 3 26 26 H 1.09002 * 109.47516 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46908 * 240.00192 * 2 1 3 28 28 H 1.08999 * 109.47359 * 120.00302 * 2 1 3 29 29 H 1.09003 * 110.66768 * 322.59039 * 5 3 2 30 30 H 1.08999 * 110.66888 * 85.55514 * 5 3 2 31 31 H 1.08998 * 109.47086 * 296.94065 * 7 6 5 32 32 H 1.08999 * 109.46865 * 56.93659 * 7 6 5 33 33 H 1.09002 * 109.47742 * 184.83219 * 10 8 7 34 34 H 1.09000 * 109.46870 * 304.83172 * 10 8 7 35 35 H 1.09001 * 109.47360 * 64.82955 * 10 8 7 36 36 H 1.08999 * 109.46975 * 305.00143 * 11 8 7 37 37 H 1.08998 * 109.46564 * 65.00197 * 11 8 7 38 38 H 0.97001 * 120.00183 * 180.02562 * 15 14 12 39 39 H 1.09005 * 109.92026 * 215.31633 * 20 6 5 40 40 H 1.09003 * 109.91737 * 94.02710 * 20 6 5 41 41 H 0.96706 * 114.00212 * 61.45306 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5741 2.0148 0.8022 5 6 1.7889 2.1170 -1.3720 6 7 2.8148 3.1901 -1.4161 7 6 3.0616 3.6263 -2.7969 8 6 4.0647 4.7815 -2.7954 9 1 4.9733 4.4730 -2.2782 10 6 3.4537 5.9866 -2.0777 11 6 4.4037 5.1646 -4.2374 12 6 5.4820 6.2174 -4.2371 13 1 5.8855 6.5769 -3.3021 14 6 5.9534 6.7215 -5.4307 15 7 5.4625 6.2832 -6.5694 16 14 7.2905 8.0260 -5.4306 17 1 8.5041 7.4908 -4.7629 18 1 7.6195 8.3978 -6.8301 19 1 6.8113 9.2259 -4.6987 20 6 4.0352 2.6060 -0.8186 21 6 3.5804 1.4781 0.1260 22 1 3.8709 1.7037 1.1521 23 8 4.1426 0.2302 -0.2848 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.9411 1.4057 -2.1839 30 1 0.7849 2.5390 -1.4153 31 1 3.4661 2.7946 -3.3739 32 1 2.1256 3.9586 -3.2457 33 1 4.1328 6.8360 -2.1511 34 1 2.5013 6.2417 -2.5425 35 1 3.2915 5.7408 -1.0283 36 1 4.7561 4.2837 -4.7740 37 1 3.5129 5.5568 -4.7280 38 1 5.7943 6.6376 -7.4091 39 1 4.5739 3.3678 -0.2550 40 1 4.6741 2.1990 -1.6023 41 1 5.1092 0.2094 -0.2671 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602494355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:57 Heat of formation + Delta-G solvation = -73.463867 kcal Electronic energy + Delta-G solvation = -17988.228777 eV Core-core repulsion = 15287.936319 eV Total energy + Delta-G solvation = -2700.292458 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.61246 -36.42131 -34.98240 -33.64067 -31.99380 -29.30660 -27.91075 -26.76448 -25.41220 -23.33008 -22.35392 -20.99099 -20.08631 -18.64732 -17.38459 -16.40891 -15.81293 -14.88735 -14.76102 -14.49160 -14.42658 -13.61506 -13.50382 -13.19411 -12.93789 -12.33884 -12.31355 -12.06681 -11.99463 -11.53345 -11.41188 -11.16469 -10.91987 -10.83344 -10.69673 -10.67183 -10.41945 -10.26537 -10.21756 -9.96403 -9.62859 -9.11991 -8.94590 -8.31589 -8.11836 -5.96464 -3.97731 3.34795 3.39196 3.41592 4.02711 4.33483 4.48280 4.59192 4.69949 4.84021 5.14990 5.21402 5.39079 5.42161 5.42584 5.54059 5.65627 5.76419 5.82497 5.83897 5.92911 5.94921 6.04508 6.09253 6.17649 6.19081 6.35917 6.42637 6.54070 6.70035 7.02720 7.06348 7.20591 7.27362 7.41663 7.57567 7.70622 7.86720 8.03677 8.47685 9.08365 9.65452 11.15071 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.044280 B = 0.004473 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.191376 B = 6258.014221 C = 6414.324745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.102 4.102 3 C -0.083 4.083 4 H 0.089 0.911 5 C 0.039 3.961 6 N -0.510 5.510 7 C 0.052 3.948 8 C -0.080 4.080 9 H 0.053 0.947 10 C -0.122 4.122 11 C 0.027 3.973 12 C -0.513 4.513 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.006 3.994 21 C 0.094 3.906 22 H 0.062 0.938 23 O -0.563 6.563 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.012 0.988 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.475 -10.978 13.576 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.140 4.140 3 C -0.102 4.102 4 H 0.107 0.893 5 C -0.089 4.089 6 N -0.234 5.234 7 C -0.075 4.075 8 C -0.099 4.099 9 H 0.071 0.929 10 C -0.180 4.180 11 C -0.010 4.010 12 C -0.551 4.551 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.123 4.123 21 C 0.035 3.965 22 H 0.080 0.920 23 O -0.368 6.368 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.030 0.970 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.262 -10.637 13.585 18.720 hybrid contribution 1.682 0.287 -0.640 1.823 sum -5.580 -10.350 12.944 17.487 Atomic orbital electron populations 1.21834 0.96204 1.01329 1.01782 1.21238 0.94766 0.95297 1.02692 1.22198 0.92869 0.96811 0.98340 0.89279 1.23287 0.97006 0.92688 0.95888 1.64815 1.06128 1.32519 1.19968 1.22502 1.00286 0.97913 0.86822 1.21192 0.95528 0.93183 0.99966 0.92860 1.21583 0.99862 0.98214 0.98305 1.19121 0.96501 0.96177 0.89241 1.21193 1.20175 1.21639 0.92133 0.92649 1.25018 0.96862 0.96898 0.95724 1.69957 1.43028 1.43426 0.97264 0.86691 0.82386 0.82242 0.76876 1.20341 1.21362 1.20251 1.23629 0.94044 0.96517 0.98063 1.22711 0.94208 0.83173 0.96453 0.91973 1.86516 1.25131 1.34569 1.90590 0.92928 0.92634 0.92997 0.91376 0.92015 0.93681 0.90262 0.95173 0.91185 0.92589 0.94218 0.94149 0.97015 0.96566 0.93042 0.90023 0.92636 0.77622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.80 37.16 0.36 -1.02 16 2 C -0.10 -1.07 4.60 -26.73 -0.12 -1.19 16 3 C -0.08 -0.95 3.01 -88.76 -0.27 -1.22 16 4 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 5 C 0.04 0.52 5.42 -1.90 -0.01 0.51 16 6 N -0.51 -7.86 4.81 -230.47 -1.11 -8.97 16 7 C 0.05 0.95 4.13 -3.83 -0.02 0.93 16 8 C -0.08 -1.67 2.29 -90.62 -0.21 -1.87 16 9 H 0.05 1.13 7.22 -51.93 -0.37 0.75 16 10 C -0.12 -2.43 8.90 37.15 0.33 -2.10 16 11 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 12 C -0.51 -14.50 8.34 -34.44 -0.29 -14.79 16 13 H 0.06 1.52 7.08 -52.49 -0.37 1.15 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.19 13.29 55.43 0.74 -26.46 16 16 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C 0.01 0.08 5.34 -2.76 -0.01 0.07 16 21 C 0.09 1.08 4.23 -25.37 -0.11 0.98 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 23 O -0.56 -6.34 11.82 -35.23 -0.42 -6.76 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.81 7.62 -51.93 -0.40 0.41 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.64 7.83 -51.93 -0.41 0.23 16 30 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 31 H 0.03 0.57 7.94 -51.93 -0.41 0.15 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 1.19 6.83 -51.93 -0.35 0.83 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.04 0.72 7.87 -51.93 -0.41 0.31 16 36 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.08 1.13 8.11 -51.93 -0.42 0.71 16 40 H 0.06 0.83 7.46 -51.93 -0.39 0.44 16 41 H 0.38 2.91 9.11 45.56 0.41 3.32 16 LS Contribution 321.15 15.07 4.84 4.84 Total: -1.00 -30.67 321.15 -8.41 -39.08 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.88 Total: -0.92 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -0.56 Total: -17.60 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.37 Total: -35.43 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.42 Total: -6.76 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.67 -8.41 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602494355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.388 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds