Wall clock time and date at job start Sun Mar 29 2020 22:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47125 * 2 1 4 4 H 1.09001 * 110.64322 * 51.85407 * 3 2 1 5 5 C 1.54932 * 110.87852 * 288.59203 * 3 2 1 6 6 N 1.48527 * 103.22824 * 204.15886 * 5 3 2 7 7 C 1.46899 * 111.00560 * 159.72079 * 6 5 3 8 8 C 1.52991 * 109.47550 * 176.93601 * 7 6 5 9 9 H 1.09004 * 109.47081 * 55.68648 * 8 7 6 10 10 C 1.52994 * 109.47567 * 295.68678 * 8 7 6 11 11 C 1.53006 * 109.47261 * 175.68378 * 8 7 6 12 12 C 1.50703 * 109.46920 * 185.00305 * 11 8 7 13 13 H 1.07995 * 120.00379 * 0.02562 * 12 11 8 14 14 C 1.37879 * 119.99522 * 180.02562 * 12 11 8 15 15 N 1.31514 * 120.00077 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99769 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47359 * 59.99879 * 16 14 12 18 18 H 1.48501 * 109.47048 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47073 * 299.99539 * 16 14 12 20 20 C 1.47898 * 105.82141 * 39.20374 * 6 5 3 21 21 C 1.53994 * 107.06007 * 334.67535 * 20 6 5 22 22 H 1.09003 * 110.30822 * 242.30761 * 21 20 6 23 23 O 1.42895 * 110.31217 * 120.23826 * 21 20 6 24 24 H 1.09001 * 109.46908 * 299.99808 * 1 2 3 25 25 H 1.08999 * 109.47359 * 59.99698 * 1 2 3 26 26 H 1.09002 * 109.47516 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46908 * 240.00192 * 2 1 3 28 28 H 1.08999 * 109.47359 * 120.00302 * 2 1 3 29 29 H 1.09003 * 110.66768 * 322.59039 * 5 3 2 30 30 H 1.08999 * 110.66888 * 85.55514 * 5 3 2 31 31 H 1.08998 * 109.47086 * 296.94065 * 7 6 5 32 32 H 1.08999 * 109.46865 * 56.93659 * 7 6 5 33 33 H 1.09002 * 109.47742 * 184.83219 * 10 8 7 34 34 H 1.09000 * 109.46870 * 304.83172 * 10 8 7 35 35 H 1.09001 * 109.47360 * 64.82955 * 10 8 7 36 36 H 1.08999 * 109.46975 * 305.00143 * 11 8 7 37 37 H 1.08998 * 109.46564 * 65.00197 * 11 8 7 38 38 H 0.97001 * 120.00183 * 180.02562 * 15 14 12 39 39 H 1.09005 * 109.92026 * 215.31633 * 20 6 5 40 40 H 1.09003 * 109.91737 * 94.02710 * 20 6 5 41 41 H 0.96706 * 114.00212 * 61.45306 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5741 2.0148 0.8022 5 6 1.7889 2.1170 -1.3720 6 7 2.8148 3.1901 -1.4161 7 6 3.0616 3.6263 -2.7969 8 6 4.0647 4.7815 -2.7954 9 1 4.9733 4.4730 -2.2782 10 6 3.4537 5.9866 -2.0777 11 6 4.4037 5.1646 -4.2374 12 6 5.4820 6.2174 -4.2371 13 1 5.8855 6.5769 -3.3021 14 6 5.9534 6.7215 -5.4307 15 7 5.4625 6.2832 -6.5694 16 14 7.2905 8.0260 -5.4306 17 1 8.5041 7.4908 -4.7629 18 1 7.6195 8.3978 -6.8301 19 1 6.8113 9.2259 -4.6987 20 6 4.0352 2.6060 -0.8186 21 6 3.5804 1.4781 0.1260 22 1 3.8709 1.7037 1.1521 23 8 4.1426 0.2302 -0.2848 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.9411 1.4057 -2.1839 30 1 0.7849 2.5390 -1.4153 31 1 3.4661 2.7946 -3.3739 32 1 2.1256 3.9586 -3.2457 33 1 4.1328 6.8360 -2.1511 34 1 2.5013 6.2417 -2.5425 35 1 3.2915 5.7408 -1.0283 36 1 4.7561 4.2837 -4.7740 37 1 3.5129 5.5568 -4.7280 38 1 5.7943 6.6376 -7.4091 39 1 4.5739 3.3678 -0.2550 40 1 4.6741 2.1990 -1.6023 41 1 5.1092 0.2094 -0.2671 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602494355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:56 Heat of formation + Delta-G solvation = -94.444526 kcal Electronic energy + Delta-G solvation = -17989.138567 eV Core-core repulsion = 15287.936319 eV Total energy + Delta-G solvation = -2701.202248 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.68847 -37.79785 -36.16630 -35.03571 -33.82818 -30.50957 -29.03348 -28.60894 -26.85454 -24.98958 -23.48153 -22.29783 -21.12926 -20.18213 -18.51570 -18.31595 -17.03599 -16.47405 -16.19906 -15.74340 -15.50926 -14.90658 -14.80639 -14.60259 -14.17146 -13.95890 -13.46786 -13.35664 -13.28623 -12.97883 -12.74964 -12.73346 -12.50935 -12.40037 -12.20725 -11.95854 -11.75572 -11.59678 -11.48927 -11.26410 -11.09076 -10.90764 -10.86994 -10.53929 -9.39051 -8.18167 -6.27898 1.39743 1.42719 1.50440 2.41446 2.95355 3.15087 3.39414 3.57021 3.71989 3.94266 4.11838 4.26606 4.27746 4.39257 4.49609 4.51238 4.58411 4.67229 4.68104 4.81433 4.87404 4.95726 4.97125 4.98756 5.08375 5.12103 5.23801 5.25620 5.39648 5.43416 5.48776 5.53484 5.54389 5.76664 5.86481 5.97357 6.02104 6.29369 6.85769 6.87536 7.40470 8.93879 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.044280 B = 0.004473 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.191376 B = 6258.014221 C = 6414.324745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.080 4.080 4 H 0.103 0.897 5 C 0.038 3.962 6 N -0.512 5.512 7 C 0.065 3.935 8 C -0.069 4.069 9 H 0.051 0.949 10 C -0.112 4.112 11 C 0.033 3.967 12 C -0.530 4.530 13 H 0.062 0.938 14 C -0.002 4.002 15 N -0.936 5.936 16 Si 0.962 3.038 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.266 1.266 20 C 0.003 3.997 21 C 0.100 3.900 22 H 0.085 0.915 23 O -0.574 6.574 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.032 0.968 30 H 0.088 0.912 31 H 0.016 0.984 32 H 0.067 0.933 33 H 0.039 0.961 34 H 0.037 0.963 35 H 0.064 0.936 36 H -0.018 1.018 37 H -0.010 1.010 38 H 0.262 0.738 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.384 -10.850 15.678 20.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.133 4.133 3 C -0.098 4.098 4 H 0.121 0.879 5 C -0.089 4.089 6 N -0.236 5.236 7 C -0.063 4.063 8 C -0.088 4.088 9 H 0.070 0.930 10 C -0.169 4.169 11 C -0.005 4.005 12 C -0.568 4.568 13 H 0.080 0.920 14 C -0.199 4.199 15 N -0.577 5.577 16 Si 0.787 3.213 17 H -0.192 1.192 18 H -0.210 1.210 19 H -0.191 1.191 20 C -0.126 4.126 21 C 0.041 3.959 22 H 0.103 0.897 23 O -0.381 6.381 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.106 0.894 31 H 0.034 0.966 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.000 1.000 37 H 0.008 0.992 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.057 0.943 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -7.165 -10.520 15.709 20.218 hybrid contribution 1.644 0.195 -1.311 2.112 sum -5.520 -10.325 14.397 18.557 Atomic orbital electron populations 1.21818 0.95040 1.01996 1.02075 1.21164 0.95735 0.94404 1.02035 1.22237 0.93022 0.97335 0.97249 0.87888 1.23350 0.96701 0.91968 0.96911 1.64772 1.07350 1.33902 1.17572 1.22208 0.99056 0.96404 0.88658 1.20984 0.96458 0.94865 0.96516 0.93023 1.21471 0.99116 0.96802 0.99532 1.19008 0.94897 0.94490 0.92090 1.21590 1.20644 1.22057 0.92532 0.92028 1.25968 0.99394 0.99291 0.95265 1.70101 1.44638 1.44955 0.97981 0.85544 0.79324 0.79346 0.77114 1.19208 1.21005 1.19113 1.23716 0.93254 0.97529 0.98075 1.22687 0.94230 0.82281 0.96700 0.89746 1.86490 1.26693 1.34287 1.90669 0.91850 0.93092 0.92228 0.93183 0.91447 0.94963 0.89389 0.96616 0.91489 0.94196 0.94344 0.91678 0.99961 0.99170 0.92911 0.89755 0.94267 0.75905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.80 71.98 0.71 -1.69 16 2 C -0.10 -1.81 4.60 30.59 0.14 -1.66 16 3 C -0.08 -1.63 3.01 -9.59 -0.03 -1.66 16 4 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 5 C 0.04 0.97 5.42 86.65 0.47 1.44 16 6 N -0.51 -15.25 4.81 -883.06 -4.25 -19.50 16 7 C 0.07 2.38 4.13 86.30 0.36 2.74 16 8 C -0.07 -2.93 2.29 -10.80 -0.02 -2.95 16 9 H 0.05 2.19 7.22 -2.38 -0.02 2.17 16 10 C -0.11 -4.36 8.90 71.98 0.64 -3.71 16 11 C 0.03 1.76 4.45 29.85 0.13 1.90 16 12 C -0.53 -30.38 8.34 25.60 0.21 -30.17 16 13 H 0.06 3.38 7.08 -2.91 -0.02 3.36 16 14 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 15 N -0.94 -57.93 13.29 21.45 0.28 -57.65 16 16 Si 0.96 44.72 29.54 68.60 2.03 46.74 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 C 0.00 0.07 5.34 86.45 0.46 0.53 16 21 C 0.10 2.09 4.23 31.47 0.13 2.22 16 22 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 23 O -0.57 -11.96 11.82 -148.98 -1.76 -13.72 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.05 0.85 7.67 -2.39 -0.02 0.83 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 1.13 7.62 -2.39 -0.02 1.11 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 29 H 0.03 0.90 7.83 -2.39 -0.02 0.88 16 30 H 0.09 2.07 8.11 -2.39 -0.02 2.05 16 31 H 0.02 0.61 7.94 -2.39 -0.02 0.59 16 32 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.04 1.66 6.83 -2.39 -0.02 1.64 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 35 H 0.06 2.20 7.87 -2.39 -0.02 2.18 16 36 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 37 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.08 2.19 8.11 -2.38 -0.02 2.17 16 40 H 0.04 1.17 7.46 -2.39 -0.02 1.15 16 41 H 0.39 5.40 9.11 -74.05 -0.67 4.73 16 Total: -1.00 -65.92 321.15 0.26 -65.66 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.30 Total: 11.13 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 3.66 Total: -32.67 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -3.96 Total: -77.14 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -1.76 Total: -13.72 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -65.92 0.26 -65.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602494355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.788 kcal (2) G-P(sol) polarization free energy of solvation -65.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds