Wall clock time and date at job start Sun Mar 29 2020 22:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47423 * 2 1 4 4 N 1.46894 * 110.45487 * 305.28977 * 3 2 1 5 5 C 1.46903 * 111.00097 * 298.78429 * 4 3 2 6 6 C 1.53000 * 109.47270 * 185.86728 * 5 4 3 7 7 H 1.09006 * 109.46833 * 54.99865 * 6 5 4 8 8 C 1.52999 * 109.47150 * 295.00055 * 6 5 4 9 9 C 1.52995 * 109.47083 * 174.99785 * 6 5 4 10 10 C 1.50710 * 109.47100 * 185.00137 * 9 6 5 11 11 H 1.07997 * 119.99358 * 359.97438 * 10 9 6 12 12 C 1.37869 * 119.99940 * 180.02562 * 10 9 6 13 13 N 1.31515 * 120.00137 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00273 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47147 * 270.00388 * 14 12 10 16 16 H 1.48506 * 109.47161 * 30.00216 * 14 12 10 17 17 H 1.48501 * 109.47225 * 149.99840 * 14 12 10 18 18 C 1.54509 * 110.51192 * 182.68364 * 3 2 1 19 19 C 1.54480 * 104.05898 * 241.21816 * 18 3 2 20 20 O 1.44429 * 104.80727 * 23.97899 * 19 18 3 21 21 C 1.44429 * 105.27390 * 319.48908 * 20 19 18 22 22 H 1.08999 * 109.47131 * 57.29001 * 1 2 3 23 23 H 1.09003 * 109.47104 * 177.29182 * 1 2 3 24 24 H 1.09000 * 109.46876 * 297.29114 * 1 2 3 25 25 H 1.09000 * 109.47058 * 240.00074 * 2 1 3 26 26 H 1.09000 * 109.47282 * 120.00312 * 2 1 3 27 27 H 1.00900 * 111.00429 * 62.74016 * 4 3 2 28 28 H 1.08995 * 109.47257 * 65.86419 * 5 4 3 29 29 H 1.09004 * 109.47029 * 305.86607 * 5 4 3 30 30 H 1.09000 * 109.47294 * 59.99792 * 8 6 5 31 31 H 1.08998 * 109.47125 * 179.97438 * 8 6 5 32 32 H 1.09003 * 109.47202 * 300.00163 * 8 6 5 33 33 H 1.09000 * 109.47162 * 65.00476 * 9 6 5 34 34 H 1.09001 * 109.47266 * 304.99675 * 9 6 5 35 35 H 0.96993 * 120.00331 * 179.97438 * 13 12 10 36 36 H 1.08997 * 110.51179 * 359.85839 * 18 3 2 37 37 H 1.09002 * 110.50769 * 122.43990 * 18 3 2 38 38 H 1.09000 * 110.37087 * 142.81269 * 19 18 3 39 39 H 1.09007 * 110.37136 * 265.14621 * 19 18 3 40 40 H 1.08997 * 110.36740 * 281.67941 * 21 20 19 41 41 H 1.08993 * 110.36994 * 159.34013 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4616 2.1916 -1.1234 5 6 1.8472 1.5940 -2.4088 6 6 1.3508 2.4806 -3.5528 7 1 1.7254 3.4949 -3.4151 8 6 -0.1790 2.4981 -3.5574 9 6 1.8586 1.9258 -4.8851 10 6 1.4740 2.8647 -5.9995 11 1 0.9223 3.7667 -5.7793 12 6 1.8257 2.5717 -7.3000 13 7 1.4897 3.3908 -8.2725 14 14 2.7794 1.0113 -7.6808 15 1 4.2360 1.2924 -7.6126 16 1 2.4304 -0.0367 -6.6882 17 1 2.4298 0.5378 -9.0442 18 6 3.5834 1.4710 -0.0678 19 6 4.0034 2.1787 1.2396 20 8 2.8978 1.9684 2.1448 21 6 1.7101 2.1363 1.3402 22 1 -0.3633 0.5553 -0.8647 23 1 -0.3633 -1.0265 -0.0486 24 1 -0.3633 0.4712 0.9133 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 0.4579 2.2518 -1.0393 28 1 1.4016 0.6033 -2.4973 29 1 2.9329 1.5099 -2.4592 30 1 -0.5408 2.8934 -2.6081 31 1 -0.5327 3.1301 -4.3720 32 1 -0.5537 1.4838 -3.6949 33 1 1.4132 0.9473 -5.0646 34 1 2.9438 1.8301 -4.8490 35 1 1.7374 3.1849 -9.1874 36 1 3.9831 0.4574 -0.0987 37 1 3.9171 2.0390 -0.9362 38 1 4.9121 1.7288 1.6395 39 1 4.1522 3.2441 1.0634 40 1 1.5073 3.1951 1.1795 41 1 0.8573 1.6538 1.8175 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602631260.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:34 Heat of formation + Delta-G solvation = -64.429142 kcal Electronic energy + Delta-G solvation = -18296.890339 eV Core-core repulsion = 15596.989656 eV Total energy + Delta-G solvation = -2699.900683 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.14752 -37.03165 -34.88581 -32.42116 -31.25179 -30.35395 -28.29785 -27.21842 -25.27710 -24.24034 -22.39218 -21.83736 -19.20043 -19.00990 -16.99988 -16.55158 -16.24415 -15.36705 -15.21398 -14.43295 -14.29070 -13.92026 -13.81731 -13.35607 -13.06865 -12.64359 -12.37775 -12.13391 -11.98472 -11.81475 -11.76330 -11.33901 -11.07013 -10.97786 -10.89161 -10.69291 -10.64017 -10.36409 -9.89851 -9.81532 -9.67237 -9.43400 -9.06447 -8.51982 -8.25316 -6.02241 -3.99176 3.30531 3.38156 3.41272 3.85268 4.23803 4.46280 4.47111 4.68322 4.80597 5.02257 5.10718 5.19294 5.31332 5.34766 5.39867 5.59692 5.62182 5.63525 5.67930 5.77796 5.84699 5.87391 5.93640 5.96883 6.01595 6.03678 6.23654 6.36083 6.45597 6.61095 6.80452 6.96786 7.05624 7.24741 7.29607 7.47209 7.57094 7.82594 8.57261 9.03593 9.60735 11.11256 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033617 B = 0.005241 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.712887 B = 5340.933841 C = 5501.776439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.146 4.146 3 C 0.082 3.918 4 N -0.672 5.672 5 C 0.059 3.941 6 C -0.074 4.074 7 H 0.070 0.930 8 C -0.135 4.135 9 C -0.008 4.008 10 C -0.512 4.512 11 H 0.074 0.926 12 C 0.065 3.935 13 N -0.905 5.905 14 Si 0.878 3.122 15 H -0.278 1.278 16 H -0.267 1.267 17 H -0.289 1.289 18 C -0.147 4.147 19 C 0.049 3.951 20 O -0.378 6.378 21 C 0.055 3.945 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.341 0.659 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.039 0.961 33 H 0.013 0.987 34 H 0.009 0.991 35 H 0.262 0.738 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.953 -5.870 18.395 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.185 4.185 3 C -0.010 4.010 4 N -0.305 5.305 5 C -0.070 4.070 6 C -0.093 4.093 7 H 0.089 0.911 8 C -0.192 4.192 9 C -0.046 4.046 10 C -0.550 4.550 11 H 0.092 0.908 12 C -0.136 4.136 13 N -0.544 5.544 14 Si 0.705 3.295 15 H -0.204 1.204 16 H -0.192 1.192 17 H -0.215 1.215 18 C -0.185 4.185 19 C -0.028 4.028 20 O -0.297 6.297 21 C -0.022 4.022 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.162 0.838 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.031 0.969 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.475 -5.420 18.424 19.261 hybrid contribution -0.032 -1.611 -0.728 1.768 sum 1.443 -7.031 17.696 19.096 Atomic orbital electron populations 1.21854 0.95679 1.02096 1.01919 1.22164 0.96385 0.97352 1.02594 1.22283 0.94663 0.91913 0.92120 1.60783 1.16102 1.52442 1.01185 1.22221 1.00407 0.96121 0.88235 1.21015 0.95295 0.99225 0.93730 0.91120 1.21739 0.96230 1.00963 1.00287 1.19602 0.95502 0.96700 0.92822 1.21132 1.35845 1.07801 0.90259 0.90820 1.25023 0.95681 0.96430 0.96422 1.69911 1.47379 1.37065 1.00093 0.86817 0.80603 0.84546 0.77508 1.20383 1.19162 1.21494 1.23066 0.94421 1.01675 0.99354 1.23370 0.90472 0.99916 0.89050 1.89088 1.15254 1.92384 1.32944 1.23493 0.88689 1.00482 0.89562 0.92302 0.92445 0.92519 0.91398 0.91382 0.83814 0.95420 0.91344 0.94716 0.91394 0.94154 0.96867 0.97228 0.92833 0.90907 0.89028 0.89470 0.92001 0.91145 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.35 37.16 0.35 -1.23 16 2 C -0.15 -1.58 4.31 -26.73 -0.12 -1.70 16 3 C 0.08 0.96 0.64 -130.03 -0.08 0.87 16 4 N -0.67 -8.92 5.80 -98.38 -0.57 -9.49 16 5 C 0.06 0.91 4.36 -3.82 -0.02 0.90 16 6 C -0.07 -1.41 2.54 -90.62 -0.23 -1.64 16 7 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 8 C -0.13 -2.42 8.77 37.16 0.33 -2.09 16 9 C -0.01 -0.20 3.52 -27.88 -0.10 -0.29 16 10 C -0.51 -14.37 8.96 -34.44 -0.31 -14.68 16 11 H 0.07 2.22 7.30 -52.49 -0.38 1.84 16 12 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 13 N -0.91 -27.90 13.96 55.43 0.77 -27.12 16 14 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 18 C -0.15 -1.68 5.81 -25.16 -0.15 -1.83 16 19 C 0.05 0.53 7.63 37.93 0.29 0.81 16 20 O -0.38 -4.73 11.65 -35.23 -0.41 -5.14 16 21 C 0.05 0.62 6.75 37.93 0.26 0.87 16 22 H 0.06 0.63 6.57 -51.93 -0.34 0.29 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.50 6.65 -51.93 -0.35 0.16 16 25 H 0.07 0.80 6.95 -51.93 -0.36 0.44 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.34 4.31 5.45 -39.29 -0.21 4.10 16 28 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 29 H 0.07 1.08 6.30 -51.93 -0.33 0.76 16 30 H 0.03 0.52 6.82 -51.93 -0.35 0.17 16 31 H 0.07 1.39 6.95 -51.93 -0.36 1.02 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 34 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.07 0.78 7.73 -51.93 -0.40 0.38 16 37 H 0.09 1.15 6.60 -51.93 -0.34 0.80 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 41 H 0.09 0.88 6.36 -51.93 -0.33 0.55 16 LS Contribution 308.28 15.07 4.65 4.65 Total: -1.00 -29.94 308.28 -7.11 -37.05 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.01 Total: 1.19 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 0.12 Total: -18.21 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.20 Total: -36.62 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.41 Total: -5.14 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.94 -7.11 -37.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602631260.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.376 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds