Wall clock time and date at job start Sun Mar 29 2020 22:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47522 * 2 1 4 4 N 1.46902 * 110.45787 * 306.29773 * 3 2 1 5 5 C 1.46901 * 110.99860 * 298.39012 * 4 3 2 6 6 C 1.53001 * 109.47248 * 185.11417 * 5 4 3 7 7 H 1.08996 * 109.46638 * 304.99599 * 6 5 4 8 8 C 1.52995 * 109.47000 * 64.99508 * 6 5 4 9 9 C 1.52999 * 109.46977 * 184.99708 * 6 5 4 10 10 C 1.50709 * 109.46765 * 174.99899 * 9 6 5 11 11 H 1.08004 * 119.99785 * 359.97438 * 10 9 6 12 12 C 1.37872 * 119.99850 * 179.97438 * 10 9 6 13 13 N 1.31512 * 120.00188 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99718 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47142 * 90.00418 * 14 12 10 16 16 H 1.48505 * 109.46753 * 209.99921 * 14 12 10 17 17 H 1.48490 * 109.47268 * 329.99933 * 14 12 10 18 18 C 1.54506 * 110.51067 * 69.04872 * 3 2 1 19 19 C 1.54480 * 104.06467 * 118.64506 * 18 3 2 20 20 O 1.44421 * 104.80065 * 336.02410 * 19 18 3 21 21 C 1.44418 * 105.28039 * 40.50982 * 20 19 18 22 22 H 1.09005 * 109.46559 * 305.55730 * 1 2 3 23 23 H 1.08993 * 109.47115 * 185.55760 * 1 2 3 24 24 H 1.09002 * 109.47317 * 65.55096 * 1 2 3 25 25 H 1.09005 * 109.47421 * 120.00361 * 2 1 3 26 26 H 1.09001 * 109.46765 * 239.99983 * 2 1 3 27 27 H 1.00900 * 110.99863 * 62.33959 * 4 3 2 28 28 H 1.09004 * 109.46802 * 305.11005 * 5 4 3 29 29 H 1.08999 * 109.47457 * 65.10884 * 5 4 3 30 30 H 1.09002 * 109.47126 * 179.97438 * 8 6 5 31 31 H 1.09006 * 109.47415 * 300.00332 * 8 6 5 32 32 H 1.09006 * 109.47267 * 60.00707 * 8 6 5 33 33 H 1.08995 * 109.47092 * 294.99578 * 9 6 5 34 34 H 1.08997 * 109.47393 * 55.00305 * 9 6 5 35 35 H 0.96999 * 120.00256 * 179.97438 * 13 12 10 36 36 H 1.08995 * 110.51388 * 237.29388 * 18 3 2 37 37 H 1.09000 * 110.51044 * 0.02562 * 18 3 2 38 38 H 1.08998 * 110.37449 * 217.19211 * 19 18 3 39 39 H 1.09003 * 110.46346 * 94.90201 * 19 18 3 40 40 H 1.09000 * 110.37846 * 200.66192 * 21 20 19 41 41 H 1.09001 * 110.37178 * 78.31645 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.4431 2.1982 -1.1093 5 6 1.8150 1.6138 -2.4047 6 6 1.2830 2.4977 -3.5346 7 1 0.2087 2.6358 -3.4125 8 6 1.9807 3.8585 -3.4891 9 6 1.5612 1.8266 -4.8811 10 6 0.9301 2.6353 -5.9852 11 1 0.3848 3.5373 -5.7499 12 6 1.0489 2.2235 -7.2957 13 7 1.7125 1.1248 -7.5821 14 14 0.2673 3.2262 -8.6642 15 1 1.2388 4.2369 -9.1542 16 1 -0.1155 2.3255 -9.7811 17 1 -0.9426 3.9133 -8.1455 18 6 1.7327 2.1254 1.3514 19 6 3.1251 2.4862 1.9150 20 8 4.0325 1.5621 1.2760 21 6 3.5818 1.4714 -0.0931 22 1 -0.3632 0.5976 0.8361 23 1 -0.3633 -1.0228 0.0995 24 1 -0.3634 0.4253 -0.9355 25 1 1.8934 -0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 0.4403 2.2523 -1.0116 28 1 2.9008 1.5482 -2.4753 29 1 1.3844 0.6161 -2.4903 30 1 1.6020 4.4881 -4.2943 31 1 1.7825 4.3366 -2.5297 32 1 3.0550 3.7203 -3.6112 33 1 2.6376 1.7688 -5.0427 34 1 1.1394 0.8216 -4.8803 35 1 1.7958 0.8349 -8.5040 36 1 1.1379 3.0257 1.1979 37 1 1.2178 1.4352 2.0197 38 1 3.1438 2.3498 2.9963 39 1 3.3858 3.5129 1.6581 40 1 3.9513 0.5556 -0.5545 41 1 3.9114 2.3424 -0.6595 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602631261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:36 Heat of formation + Delta-G solvation = -70.227527 kcal Electronic energy + Delta-G solvation = -18234.915345 eV Core-core repulsion = 15534.763225 eV Total energy + Delta-G solvation = -2700.152120 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.06344 -36.83787 -34.83734 -32.46786 -30.86305 -30.38259 -28.23653 -26.73511 -25.18883 -23.39016 -23.10383 -22.04786 -19.25425 -19.00126 -16.37351 -16.20226 -16.06459 -15.52645 -14.95657 -14.66386 -14.48902 -13.93291 -13.54331 -13.30033 -12.80971 -12.47877 -12.28141 -11.94920 -11.76061 -11.63882 -11.40285 -11.33249 -10.97699 -10.86238 -10.81195 -10.75108 -10.61009 -10.28274 -10.24739 -9.71956 -9.68128 -9.13179 -8.95313 -8.32558 -8.14656 -5.97286 -3.98402 3.33191 3.39529 3.42630 3.91174 4.39098 4.44478 4.49894 4.73849 4.82752 5.11540 5.12490 5.25735 5.38628 5.47962 5.51042 5.62909 5.66644 5.74922 5.76170 5.85272 5.87411 5.92576 5.98029 6.09359 6.14208 6.21136 6.39306 6.56891 6.68505 6.73843 7.02734 7.18119 7.20276 7.37054 7.61377 7.70010 7.85737 8.02916 8.46971 9.08001 9.65073 11.14252 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.039524 B = 0.004805 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.252043 B = 5825.883581 C = 5996.516414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.146 4.146 3 C 0.084 3.916 4 N -0.670 5.670 5 C 0.059 3.941 6 C -0.080 4.080 7 H 0.053 0.947 8 C -0.123 4.123 9 C 0.027 3.973 10 C -0.512 4.512 11 H 0.056 0.944 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.889 3.111 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.144 4.144 19 C 0.049 3.951 20 O -0.379 6.379 21 C 0.057 3.943 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.340 0.660 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.053 0.947 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.016 0.984 34 H 0.012 0.988 35 H 0.259 0.741 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.263 0.324 17.638 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.185 4.185 3 C -0.008 4.008 4 N -0.302 5.302 5 C -0.069 4.069 6 C -0.099 4.099 7 H 0.071 0.929 8 C -0.180 4.180 9 C -0.010 4.010 10 C -0.551 4.551 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.717 3.283 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.182 4.182 19 C -0.028 4.028 20 O -0.297 6.297 21 C -0.020 4.020 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.159 0.841 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.034 0.966 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.479 0.581 17.574 17.590 hybrid contribution -1.158 -0.300 -1.054 1.594 sum -0.679 0.281 16.520 16.536 Atomic orbital electron populations 1.21799 0.95595 1.01848 1.01991 1.22178 0.96448 0.97278 1.02607 1.22270 0.95130 0.91706 0.91735 1.60809 1.15614 1.52505 1.01271 1.22212 1.00499 0.96244 0.87979 1.21172 0.98533 0.95160 0.95073 0.92899 1.21587 0.99393 0.97135 0.99870 1.19120 0.96986 0.95362 0.89560 1.21235 1.33326 1.09164 0.91325 0.92597 1.25014 0.95536 0.95117 0.98850 1.69963 1.41973 1.22870 1.18882 0.86638 0.79689 0.80038 0.81906 1.20715 1.21329 1.19928 1.23001 0.98164 1.01446 0.95562 1.23337 0.88147 0.93635 0.97727 1.89093 1.53025 1.64752 1.22872 1.23520 0.92107 1.02541 0.83859 0.92610 0.92600 0.92340 0.91515 0.91360 0.84068 0.91546 0.95289 0.92824 0.93943 0.94270 0.96613 0.96975 0.93112 0.89677 0.90790 0.89625 0.92156 0.89368 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.16 37.16 0.34 -1.30 16 2 C -0.15 -1.68 4.22 -26.73 -0.11 -1.80 16 3 C 0.08 1.01 0.64 -130.03 -0.08 0.92 16 4 N -0.67 -9.13 5.24 -98.37 -0.52 -9.65 16 5 C 0.06 0.98 4.35 -3.82 -0.02 0.96 16 6 C -0.08 -1.61 2.52 -90.62 -0.23 -1.84 16 7 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 8 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 9 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 10 C -0.51 -14.30 8.41 -34.44 -0.29 -14.59 16 11 H 0.06 1.53 7.06 -52.48 -0.37 1.15 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 14 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.14 -1.47 5.96 -25.16 -0.15 -1.62 16 19 C 0.05 0.51 7.63 37.93 0.29 0.80 16 20 O -0.38 -5.08 11.65 -35.23 -0.41 -5.49 16 21 C 0.06 0.75 5.55 37.94 0.21 0.96 16 22 H 0.05 0.53 7.02 -51.93 -0.36 0.16 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.69 6.80 -51.93 -0.35 0.33 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.87 6.97 -51.93 -0.36 0.51 16 27 H 0.34 4.43 7.20 -39.29 -0.28 4.15 16 28 H 0.07 1.13 6.86 -51.93 -0.36 0.77 16 29 H 0.03 0.49 6.65 -51.93 -0.35 0.15 16 30 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 31 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.08 0.84 7.97 -51.93 -0.41 0.43 16 37 H 0.07 0.68 7.09 -51.93 -0.37 0.31 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.14 7.85 -51.93 -0.41 0.73 16 41 H 0.07 1.03 7.83 -51.93 -0.41 0.63 16 LS Contribution 315.70 15.07 4.76 4.76 Total: -1.00 -29.54 315.70 -7.69 -37.23 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.31 Total: 0.18 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 0.07 Total: -17.46 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.22 Total: -35.89 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.41 Total: -5.49 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.54 -7.69 -37.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602631261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.994 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds