Wall clock time and date at job start Sun Mar 29 2020 22:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46888 * 2 1 4 4 N 1.46906 * 110.45625 * 305.63085 * 3 2 1 5 5 C 1.46901 * 110.99915 * 297.56542 * 4 3 2 6 6 C 1.53001 * 109.47248 * 185.43158 * 5 4 3 7 7 H 1.08994 * 109.46779 * 54.99506 * 6 5 4 8 8 C 1.52999 * 109.46773 * 294.99857 * 6 5 4 9 9 C 1.52997 * 109.47044 * 174.99888 * 6 5 4 10 10 C 1.50709 * 109.46802 * 184.99957 * 9 6 5 11 11 H 1.07998 * 120.00012 * 359.97438 * 10 9 6 12 12 C 1.37877 * 119.99798 * 179.97438 * 10 9 6 13 13 N 1.31519 * 120.00272 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99883 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47046 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47438 * 119.99958 * 14 12 10 17 17 H 1.48505 * 109.47016 * 240.00487 * 14 12 10 18 18 C 1.54507 * 110.50977 * 68.38145 * 3 2 1 19 19 C 1.54483 * 104.05943 * 118.64998 * 18 3 2 20 20 O 1.44429 * 104.80140 * 336.01530 * 19 18 3 21 21 C 1.44419 * 105.27077 * 40.51848 * 20 19 18 22 22 H 1.09004 * 109.47270 * 306.21300 * 1 2 3 23 23 H 1.09010 * 109.46740 * 186.22263 * 1 2 3 24 24 H 1.08994 * 109.47372 * 66.22205 * 1 2 3 25 25 H 1.08998 * 109.47607 * 119.99745 * 2 1 3 26 26 H 1.09001 * 109.47106 * 240.00305 * 2 1 3 27 27 H 1.00904 * 110.99868 * 61.51229 * 4 3 2 28 28 H 1.09004 * 109.46802 * 305.42746 * 5 4 3 29 29 H 1.08999 * 109.47457 * 65.42626 * 5 4 3 30 30 H 1.08998 * 109.47000 * 299.99867 * 8 6 5 31 31 H 1.09001 * 109.47518 * 60.00064 * 8 6 5 32 32 H 1.09003 * 109.47025 * 179.97438 * 8 6 5 33 33 H 1.08994 * 109.47309 * 304.99342 * 9 6 5 34 34 H 1.08991 * 109.47272 * 64.99983 * 9 6 5 35 35 H 0.96996 * 119.99919 * 179.97438 * 13 12 10 36 36 H 1.09000 * 110.51205 * 237.29062 * 18 3 2 37 37 H 1.08997 * 110.51319 * 359.97438 * 18 3 2 38 38 H 1.09003 * 110.36524 * 217.19287 * 19 18 3 39 39 H 1.08996 * 110.46913 * 94.89943 * 19 18 3 40 40 H 1.09005 * 110.36789 * 200.65176 * 21 20 19 41 41 H 1.09004 * 110.37694 * 78.31856 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.4551 2.1939 -1.1187 5 6 1.8571 1.6162 -2.4082 6 6 1.3429 2.5007 -3.5458 7 1 1.6937 3.5221 -3.3988 8 6 -0.1870 2.4830 -3.5538 9 6 1.8661 1.9689 -4.8816 10 6 1.4624 2.9081 -5.9889 11 1 0.8896 3.7952 -5.7626 12 6 1.8243 2.6347 -7.2910 13 7 2.5215 1.5541 -7.5667 14 14 1.3245 3.7992 -8.6634 15 1 0.5509 4.9318 -8.0944 16 1 2.5405 4.3193 -9.3387 17 1 0.4842 3.0717 -9.6483 18 6 1.7177 2.1307 1.3453 19 6 3.1038 2.4939 1.9226 20 8 4.0183 1.5673 1.2972 21 6 3.5825 1.4714 -0.0763 22 1 -0.3634 0.6071 0.8292 23 1 -0.3633 -1.0217 0.1114 24 1 -0.3634 0.4143 -0.9404 25 1 1.8934 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 0.4501 2.2367 -1.0394 28 1 2.9445 1.5575 -2.4567 29 1 1.4346 0.6162 -2.5059 30 1 -0.5377 1.4615 -3.7007 31 1 -0.5597 2.8619 -2.6022 32 1 -0.5534 3.1135 -4.3640 33 1 2.9531 1.8979 -4.8437 34 1 1.4438 0.9819 -5.0702 35 1 2.7757 1.3616 -8.4827 36 1 1.1245 3.0303 1.1817 37 1 1.1947 1.4433 2.0103 38 1 3.1106 2.3617 3.0046 39 1 3.3673 3.5196 1.6646 40 1 3.9572 0.5538 -0.5301 41 1 3.9183 2.3402 -0.6426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602631263.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:39 Heat of formation + Delta-G solvation = -89.107714 kcal Electronic energy + Delta-G solvation = -18239.248791 eV Core-core repulsion = 15538.277965 eV Total energy + Delta-G solvation = -2700.970826 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07649 -38.21317 -36.28423 -34.39651 -32.16791 -31.28671 -29.45026 -28.46913 -26.92339 -24.68576 -24.27826 -23.28263 -20.60923 -20.22764 -18.51384 -17.34373 -17.03629 -16.82158 -16.46350 -15.98717 -15.65869 -15.15203 -14.99716 -14.57033 -14.25809 -13.96056 -13.47927 -13.33474 -13.26165 -13.00904 -12.77439 -12.69802 -12.54336 -12.28505 -12.22487 -12.02005 -11.81180 -11.70827 -11.60330 -11.44942 -11.04616 -10.88449 -10.68546 -10.53559 -9.34092 -8.17156 -6.26069 1.39926 1.40648 1.53436 2.42251 2.92150 3.16590 3.34961 3.51068 3.80673 3.88423 4.18421 4.23802 4.29224 4.34301 4.40777 4.46452 4.52897 4.60399 4.76081 4.77200 4.85383 4.85505 4.90180 4.97591 5.03326 5.06867 5.11632 5.21067 5.24113 5.35057 5.40948 5.50025 5.56806 5.77790 5.81719 5.90760 6.13120 6.32427 6.52069 6.90386 7.42388 8.95143 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037237 B = 0.004842 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.769515 B = 5780.786584 C = 5982.057353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.143 4.143 3 C 0.083 3.917 4 N -0.669 5.669 5 C 0.075 3.925 6 C -0.073 4.073 7 H 0.055 0.945 8 C -0.125 4.125 9 C 0.032 3.968 10 C -0.526 4.526 11 H 0.061 0.939 12 C -0.002 4.002 13 N -0.936 5.936 14 Si 0.960 3.040 15 H -0.261 1.261 16 H -0.281 1.281 17 H -0.280 1.280 18 C -0.136 4.136 19 C 0.042 3.958 20 O -0.395 6.395 21 C 0.054 3.946 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.349 0.651 28 H 0.055 0.945 29 H 0.027 0.973 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.043 0.957 33 H -0.015 1.015 34 H -0.011 1.011 35 H 0.261 0.739 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.199 -0.197 18.933 19.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.182 4.182 3 C -0.009 4.009 4 N -0.303 5.303 5 C -0.054 4.054 6 C -0.092 4.092 7 H 0.074 0.926 8 C -0.182 4.182 9 C -0.005 4.005 10 C -0.565 4.565 11 H 0.079 0.921 12 C -0.199 4.199 13 N -0.577 5.577 14 Si 0.785 3.215 15 H -0.185 1.185 16 H -0.207 1.207 17 H -0.205 1.205 18 C -0.174 4.174 19 C -0.034 4.034 20 O -0.314 6.314 21 C -0.023 4.023 22 H 0.091 0.909 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.170 0.830 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.003 0.997 34 H 0.008 0.992 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.128 0.872 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.457 0.093 18.910 19.223 hybrid contribution -0.474 -0.486 -1.463 1.613 sum -3.931 -0.393 17.446 17.888 Atomic orbital electron populations 1.21787 0.94470 1.02659 1.02037 1.22133 0.97362 0.96477 1.02224 1.22325 0.94167 0.92372 0.92018 1.60745 1.15965 1.53138 1.00404 1.21846 0.99379 0.95556 0.88612 1.20993 0.96220 0.98594 0.93412 0.92647 1.21631 0.94938 1.00683 1.00959 1.19010 0.94106 0.94954 0.92461 1.21671 1.33615 1.08460 0.92711 0.92087 1.25942 0.95287 0.97007 1.01708 1.70110 1.39892 1.27661 1.20058 0.85468 0.78060 0.79097 0.78861 1.18521 1.20661 1.20536 1.22987 0.98225 1.01895 0.94265 1.23563 0.87635 0.93123 0.99100 1.89080 1.54257 1.65382 1.22659 1.23476 0.93267 1.01682 0.83893 0.90902 0.91821 0.93515 0.90621 0.93086 0.82972 0.92680 0.95474 0.94123 0.91443 0.93761 0.99697 0.99234 0.92992 0.88971 0.88924 0.87219 0.92155 0.89761 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.16 71.98 0.66 -2.14 16 2 C -0.14 -3.06 4.27 30.60 0.13 -2.93 16 3 C 0.08 1.90 0.65 4.54 0.00 1.90 16 4 N -0.67 -17.69 5.79 -465.15 -2.69 -20.38 16 5 C 0.08 2.52 4.48 86.30 0.39 2.91 16 6 C -0.07 -2.95 2.55 -10.79 -0.03 -2.98 16 7 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 8 C -0.12 -4.43 8.77 71.98 0.63 -3.80 16 9 C 0.03 1.70 4.45 29.85 0.13 1.83 16 10 C -0.53 -29.81 8.41 25.60 0.22 -29.59 16 11 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 12 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 13 N -0.94 -57.53 13.29 21.45 0.28 -57.25 16 14 Si 0.96 44.64 29.54 68.60 2.03 46.66 16 15 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 C -0.14 -2.42 5.95 31.61 0.19 -2.23 16 19 C 0.04 0.81 7.63 72.49 0.55 1.36 16 20 O -0.40 -10.29 11.65 -148.98 -1.74 -12.03 16 21 C 0.05 1.44 5.53 72.48 0.40 1.84 16 22 H 0.07 1.10 6.96 -2.39 -0.02 1.08 16 23 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.05 0.97 7.06 -2.39 -0.02 0.95 16 25 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.26 6.96 -2.39 -0.02 1.25 16 27 H 0.35 8.34 5.58 -89.69 -0.50 7.83 16 28 H 0.05 1.97 6.79 -2.38 -0.02 1.96 16 29 H 0.03 0.92 6.84 -2.39 -0.02 0.90 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.90 6.81 -2.39 -0.02 1.89 16 32 H 0.04 1.72 6.95 -2.39 -0.02 1.70 16 33 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 34 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 35 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.09 1.55 7.97 -2.39 -0.02 1.53 16 37 H 0.09 1.34 7.05 -2.39 -0.02 1.33 16 38 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 2.25 7.86 -2.38 -0.02 2.23 16 41 H 0.06 1.69 7.78 -2.39 -0.02 1.67 16 Total: -1.00 -64.16 313.97 2.10 -62.06 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.48 Total: 14.46 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: 3.74 Total: -33.52 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -2.41 Total: -77.62 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -1.74 Total: -12.03 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -64.16 2.10 -62.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602631263.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.052 kcal (2) G-P(sol) polarization free energy of solvation -64.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds