Wall clock time and date at job start Sun Mar 29 2020 22:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47031 * 2 1 4 4 C 1.53006 * 112.99981 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47006 * 179.97438 * 4 3 2 6 6 C 1.46903 * 110.99673 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46899 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47054 * 55.00270 * 7 6 5 9 9 C 1.52995 * 109.47460 * 295.00352 * 7 6 5 10 10 C 1.52998 * 109.47291 * 175.00111 * 7 6 5 11 11 C 1.50694 * 109.47468 * 184.99992 * 10 7 6 12 12 H 1.07998 * 119.99884 * 0.02562 * 11 10 7 13 13 C 1.37874 * 120.00022 * 179.97438 * 11 10 7 14 14 N 1.31515 * 120.00277 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99881 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47041 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47226 * 120.00324 * 15 13 11 18 18 H 1.48509 * 109.46865 * 240.00003 * 15 13 11 19 19 C 1.54033 * 113.81572 * 311.82208 * 3 2 1 20 20 O 1.44448 * 85.42623 * 91.81073 * 19 3 2 21 21 C 1.44186 * 93.37660 * 24.08850 * 20 19 3 22 22 H 1.08995 * 109.47163 * 59.99880 * 1 2 3 23 23 H 1.08993 * 109.46934 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46937 * 299.99983 * 1 2 3 25 25 H 1.08993 * 109.47161 * 239.99819 * 2 1 3 26 26 H 1.09004 * 109.46974 * 119.99558 * 2 1 3 27 27 H 1.09001 * 109.47002 * 299.99452 * 4 3 2 28 28 H 1.08993 * 109.46955 * 59.99889 * 4 3 2 29 29 H 1.00906 * 111.00348 * 56.04933 * 5 4 3 30 30 H 1.08993 * 109.47323 * 299.99830 * 6 5 4 31 31 H 1.08995 * 109.46831 * 60.00909 * 6 5 4 32 32 H 1.09006 * 109.47185 * 59.99889 * 9 7 6 33 33 H 1.09001 * 109.47385 * 179.97438 * 9 7 6 34 34 H 1.08998 * 109.47157 * 300.00441 * 9 7 6 35 35 H 1.08999 * 109.47243 * 305.00380 * 10 7 6 36 36 H 1.09004 * 109.46823 * 65.00225 * 10 7 6 37 37 H 0.97002 * 120.00237 * 179.97438 * 14 13 11 38 38 H 1.08999 * 113.87116 * 205.91624 * 19 3 2 39 39 H 1.08998 * 113.87007 * 337.62679 * 19 3 2 40 40 H 1.08994 * 113.86502 * 221.76872 * 21 20 19 41 41 H 1.09001 * 113.86071 * 90.06260 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5671 1.5367 -0.0006 5 7 3.9706 2.9492 -0.0012 6 6 5.4339 3.0787 -0.0012 7 6 5.8147 4.5605 -0.0025 8 1 5.3342 5.0599 0.8389 9 6 5.3513 5.2052 -1.3103 10 6 7.3334 4.6969 0.1232 11 6 7.6985 6.1539 0.2455 12 1 6.9247 6.9072 0.2351 13 6 9.0204 6.5250 0.3718 14 7 9.9626 5.6077 0.3850 15 14 9.4729 8.3310 0.5240 16 1 8.2388 9.1558 0.4816 17 1 10.1767 8.5581 1.8118 18 1 10.3631 8.7148 -0.6010 19 6 1.3614 2.3421 -1.0501 20 8 0.4264 2.6675 0.0017 21 6 1.3613 2.3422 1.0501 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.9618 1.0461 0.8892 28 1 3.9610 1.0463 -0.8908 29 1 3.5643 3.4417 0.7802 30 1 5.8411 2.5993 0.8889 31 1 5.8410 2.5986 -0.8910 32 1 4.2693 5.1080 -1.3998 33 1 5.6222 6.2610 -1.3110 34 1 5.8317 4.7058 -2.1517 35 1 7.6742 4.1613 1.0092 36 1 7.8105 4.2759 -0.7618 37 1 10.8927 5.8688 0.4734 38 1 1.9741 3.1843 -1.3716 39 1 0.9185 1.7932 -1.8812 40 1 0.9186 1.7933 1.8811 41 1 1.9741 3.1845 1.3713 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602684772.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:35 Heat of formation + Delta-G solvation = -35.145314 kcal Electronic energy + Delta-G solvation = -17775.888051 eV Core-core repulsion = 15077.257210 eV Total energy + Delta-G solvation = -2698.630841 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.01571 -36.79628 -34.36037 -33.26988 -31.90982 -29.05691 -26.80969 -26.64654 -25.44111 -24.56047 -23.06164 -21.93351 -19.22856 -18.52906 -16.63886 -16.31401 -16.20658 -15.78039 -14.85630 -14.63898 -14.56153 -14.05838 -13.65158 -13.17150 -12.96004 -12.60021 -12.26433 -12.11851 -12.07930 -11.62205 -11.48911 -11.38221 -11.26182 -10.86662 -10.76787 -10.48102 -10.39523 -10.29328 -10.14036 -9.71628 -9.50318 -9.15445 -8.94537 -8.33513 -8.16890 -5.98063 -3.99134 3.31974 3.39649 3.43881 3.69462 4.05390 4.26403 4.48777 4.66110 4.88396 5.07443 5.11035 5.34428 5.37868 5.39962 5.44107 5.52189 5.59057 5.65637 5.73296 5.78194 5.88436 5.96493 6.03486 6.11601 6.14307 6.16177 6.21557 6.40235 6.53264 6.67121 6.99447 7.16519 7.18720 7.32341 7.57610 7.69230 7.84524 8.02192 8.46265 9.07557 9.64455 11.13502 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.054723 B = 0.003971 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.548716 B = 7049.733065 C = 7278.474999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.128 4.128 4 C 0.065 3.935 5 N -0.688 5.688 6 C 0.064 3.936 7 C -0.083 4.083 8 H 0.053 0.947 9 C -0.122 4.122 10 C 0.027 3.973 11 C -0.512 4.512 12 H 0.057 0.943 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.889 3.111 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C 0.051 3.949 20 O -0.381 6.381 21 C 0.042 3.958 22 H 0.059 0.941 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.335 0.665 30 H 0.025 0.975 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.039 0.961 35 H 0.012 0.988 36 H 0.016 0.984 37 H 0.259 0.741 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.338 -10.558 -0.601 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.137 4.137 3 C -0.128 4.128 4 C -0.065 4.065 5 N -0.320 5.320 6 C -0.064 4.064 7 C -0.102 4.102 8 H 0.071 0.929 9 C -0.180 4.180 10 C -0.011 4.011 11 C -0.550 4.550 12 H 0.075 0.925 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.718 3.282 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.026 4.026 20 O -0.300 6.300 21 C -0.035 4.035 22 H 0.078 0.922 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.094 0.906 29 H 0.155 0.845 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.030 0.970 36 H 0.034 0.966 37 H 0.068 0.932 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.469 -10.418 -1.274 19.530 hybrid contribution 0.926 0.594 1.056 1.525 sum -15.544 -9.824 -0.218 18.389 Atomic orbital electron populations 1.21785 0.95007 1.00748 1.02932 1.21235 0.96441 0.93620 1.02372 1.23721 0.95674 0.96557 0.96883 1.21827 0.93252 0.90538 1.00900 1.60640 1.10919 1.10772 1.49710 1.22151 0.85389 0.98988 0.99890 1.21202 0.99723 0.91633 0.97599 0.92897 1.21585 0.98817 1.00763 0.96803 1.19123 0.88095 0.96917 0.96922 1.21276 0.91970 0.92562 1.49210 0.92502 1.25026 0.96737 0.97257 0.95575 1.69977 1.00111 1.32583 1.51037 0.86574 0.78475 0.85630 0.77566 1.19728 1.21118 1.21081 1.24120 0.89313 0.97708 0.91455 1.89673 1.32828 1.90528 1.16934 1.24001 0.90331 0.96949 0.92258 0.92207 0.93290 0.92334 0.91326 0.91558 0.95084 0.90630 0.84533 0.95719 0.91485 0.94004 0.92763 0.94154 0.96961 0.96554 0.93160 0.88147 0.90110 0.89764 0.90093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.63 37.16 0.32 -0.95 16 2 C -0.10 -0.85 5.65 -26.73 -0.15 -1.00 16 3 C -0.13 -1.29 1.38 -153.43 -0.21 -1.50 16 4 C 0.06 0.74 5.38 -3.82 -0.02 0.72 16 5 N -0.69 -9.38 4.82 -113.78 -0.55 -9.93 16 6 C 0.06 1.07 5.07 -3.82 -0.02 1.06 16 7 C -0.08 -1.66 2.48 -90.62 -0.22 -1.89 16 8 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 9 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 10 C 0.03 0.69 4.45 -27.89 -0.12 0.56 16 11 C -0.51 -14.33 8.41 -34.44 -0.29 -14.62 16 12 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 13 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 15 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 C 0.05 0.56 7.60 37.64 0.29 0.85 16 20 O -0.38 -4.75 10.87 -35.23 -0.38 -5.14 16 21 C 0.04 0.44 7.58 37.64 0.29 0.73 16 22 H 0.06 0.55 6.53 -51.93 -0.34 0.21 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.54 6.53 -51.93 -0.34 0.20 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.34 4.43 6.44 -39.29 -0.25 4.17 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 33 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.10 1.24 7.28 -51.93 -0.38 0.86 16 39 H 0.08 0.80 7.33 -51.93 -0.38 0.42 16 40 H 0.08 0.78 7.32 -51.93 -0.38 0.40 16 41 H 0.08 0.87 5.97 -51.93 -0.31 0.56 16 LS Contribution 317.86 15.07 4.79 4.79 Total: -1.00 -29.59 317.86 -7.64 -37.24 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.30 Total: -0.80 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 0.08 Total: -16.60 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.19 Total: -36.19 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.38 Total: -5.14 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.59 -7.64 -37.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602684772.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.091 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds