Wall clock time and date at job start Sun Mar 29 2020 22:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47031 * 2 1 4 4 C 1.53006 * 112.99981 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47006 * 179.97438 * 4 3 2 6 6 C 1.46903 * 110.99673 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46899 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47054 * 55.00270 * 7 6 5 9 9 C 1.52995 * 109.47460 * 295.00352 * 7 6 5 10 10 C 1.52998 * 109.47291 * 175.00111 * 7 6 5 11 11 C 1.50694 * 109.47468 * 184.99992 * 10 7 6 12 12 H 1.07998 * 119.99884 * 0.02562 * 11 10 7 13 13 C 1.37874 * 120.00022 * 179.97438 * 11 10 7 14 14 N 1.31515 * 120.00277 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99881 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47041 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47226 * 120.00324 * 15 13 11 18 18 H 1.48509 * 109.46865 * 240.00003 * 15 13 11 19 19 C 1.54033 * 113.81572 * 311.82208 * 3 2 1 20 20 O 1.44448 * 85.42623 * 91.81073 * 19 3 2 21 21 C 1.44186 * 93.37660 * 24.08850 * 20 19 3 22 22 H 1.08995 * 109.47163 * 59.99880 * 1 2 3 23 23 H 1.08993 * 109.46934 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46937 * 299.99983 * 1 2 3 25 25 H 1.08993 * 109.47161 * 239.99819 * 2 1 3 26 26 H 1.09004 * 109.46974 * 119.99558 * 2 1 3 27 27 H 1.09001 * 109.47002 * 299.99452 * 4 3 2 28 28 H 1.08993 * 109.46955 * 59.99889 * 4 3 2 29 29 H 1.00906 * 111.00348 * 56.04933 * 5 4 3 30 30 H 1.08993 * 109.47323 * 299.99830 * 6 5 4 31 31 H 1.08995 * 109.46831 * 60.00909 * 6 5 4 32 32 H 1.09006 * 109.47185 * 59.99889 * 9 7 6 33 33 H 1.09001 * 109.47385 * 179.97438 * 9 7 6 34 34 H 1.08998 * 109.47157 * 300.00441 * 9 7 6 35 35 H 1.08999 * 109.47243 * 305.00380 * 10 7 6 36 36 H 1.09004 * 109.46823 * 65.00225 * 10 7 6 37 37 H 0.97002 * 120.00237 * 179.97438 * 14 13 11 38 38 H 1.08999 * 113.87116 * 205.91624 * 19 3 2 39 39 H 1.08998 * 113.87007 * 337.62679 * 19 3 2 40 40 H 1.08994 * 113.86502 * 221.76872 * 21 20 19 41 41 H 1.09001 * 113.86071 * 90.06260 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5671 1.5367 -0.0006 5 7 3.9706 2.9492 -0.0012 6 6 5.4339 3.0787 -0.0012 7 6 5.8147 4.5605 -0.0025 8 1 5.3342 5.0599 0.8389 9 6 5.3513 5.2052 -1.3103 10 6 7.3334 4.6969 0.1232 11 6 7.6985 6.1539 0.2455 12 1 6.9247 6.9072 0.2351 13 6 9.0204 6.5250 0.3718 14 7 9.9626 5.6077 0.3850 15 14 9.4729 8.3310 0.5240 16 1 8.2388 9.1558 0.4816 17 1 10.1767 8.5581 1.8118 18 1 10.3631 8.7148 -0.6010 19 6 1.3614 2.3421 -1.0501 20 8 0.4264 2.6675 0.0017 21 6 1.3613 2.3422 1.0501 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.9618 1.0461 0.8892 28 1 3.9610 1.0463 -0.8908 29 1 3.5643 3.4417 0.7802 30 1 5.8411 2.5993 0.8889 31 1 5.8410 2.5986 -0.8910 32 1 4.2693 5.1080 -1.3998 33 1 5.6222 6.2610 -1.3110 34 1 5.8317 4.7058 -2.1517 35 1 7.6742 4.1613 1.0092 36 1 7.8105 4.2759 -0.7618 37 1 10.8927 5.8688 0.4734 38 1 1.9741 3.1843 -1.3716 39 1 0.9185 1.7932 -1.8812 40 1 0.9186 1.7933 1.8811 41 1 1.9741 3.1845 1.3713 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602684772.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:34 Heat of formation + Delta-G solvation = -53.290845 kcal Electronic energy + Delta-G solvation = -17776.674901 eV Core-core repulsion = 15077.257210 eV Total energy + Delta-G solvation = -2699.417690 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.87759 -38.23262 -35.78329 -34.49161 -33.57479 -30.16198 -28.68547 -27.48834 -26.77882 -25.66448 -24.52295 -23.12679 -20.86481 -19.36446 -18.51202 -17.42380 -17.21570 -16.77003 -16.53829 -16.04808 -15.43172 -15.35999 -15.05389 -14.55834 -14.15316 -13.79825 -13.73861 -13.31590 -13.11045 -12.97808 -12.81461 -12.77320 -12.60131 -12.30413 -12.20434 -12.11706 -11.91139 -11.49980 -11.28252 -11.17381 -11.07649 -10.83117 -10.53881 -10.37786 -9.31549 -8.17693 -6.26548 1.39748 1.40532 1.53399 2.41999 2.85419 3.15857 3.17360 3.26602 3.87570 3.98691 4.19945 4.26883 4.32413 4.42696 4.53646 4.56821 4.61808 4.66334 4.75082 4.77025 4.84698 4.91216 4.94955 5.03103 5.09730 5.22130 5.24773 5.30582 5.31016 5.36523 5.47162 5.50061 5.51882 5.56730 5.81791 5.89434 6.05877 6.31759 6.45677 6.89870 7.41864 8.94521 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.054723 B = 0.003971 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.548716 B = 7049.733065 C = 7278.474999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.116 4.116 4 C 0.066 3.934 5 N -0.684 5.684 6 C 0.079 3.921 7 C -0.075 4.075 8 H 0.052 0.948 9 C -0.113 4.113 10 C 0.032 3.968 11 C -0.528 4.528 12 H 0.060 0.940 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.960 3.040 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.047 3.953 20 O -0.399 6.399 21 C 0.038 3.962 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.036 0.964 28 H 0.077 0.923 29 H 0.340 0.660 30 H 0.019 0.981 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.035 0.965 35 H -0.014 1.014 36 H -0.010 1.010 37 H 0.262 0.738 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.586 -10.606 -0.544 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 C -0.116 4.116 4 C -0.063 4.063 5 N -0.317 5.317 6 C -0.051 4.051 7 C -0.094 4.094 8 H 0.070 0.930 9 C -0.170 4.170 10 C -0.006 4.006 11 C -0.566 4.566 12 H 0.078 0.922 13 C -0.200 4.200 14 N -0.576 5.576 15 Si 0.785 3.215 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.206 1.206 19 C -0.029 4.029 20 O -0.318 6.318 21 C -0.039 4.039 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.160 0.840 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.005 0.995 36 H 0.009 0.991 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.740 -10.469 -1.217 20.635 hybrid contribution 1.289 0.574 1.041 1.754 sum -16.450 -9.895 -0.175 19.198 Atomic orbital electron populations 1.21745 0.94904 1.01350 1.02141 1.21250 0.96415 0.92479 1.03257 1.23646 0.94362 0.97437 0.96193 1.21856 0.94266 0.88929 1.01221 1.60561 1.08554 1.12548 1.50031 1.21827 0.87496 0.96215 0.99518 1.21016 0.95840 0.94326 0.98173 0.92956 1.21479 1.00288 0.99282 0.95937 1.19016 0.91768 0.95390 0.94387 1.21675 0.92333 0.93800 1.48785 0.92163 1.25943 0.96777 1.02052 0.95209 1.70104 1.00552 1.34942 1.52045 0.85467 0.78428 0.79920 0.77660 1.18616 1.20532 1.20570 1.24140 0.89249 0.97607 0.91893 1.89662 1.33631 1.90725 1.17768 1.24121 0.90166 0.97094 0.92522 0.93052 0.92003 0.93046 0.90506 0.90632 0.94570 0.90450 0.84039 0.96280 0.91818 0.91493 0.94563 0.94535 0.99549 0.99132 0.92956 0.89437 0.88938 0.88388 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.63 71.98 0.62 -1.54 16 2 C -0.10 -1.41 5.65 30.59 0.17 -1.24 16 3 C -0.12 -2.10 1.38 -51.48 -0.07 -2.17 16 4 C 0.07 1.39 5.38 86.31 0.46 1.86 16 5 N -0.68 -17.63 4.82 -513.89 -2.48 -20.11 16 6 C 0.08 2.58 5.07 86.30 0.44 3.02 16 7 C -0.07 -3.00 2.48 -10.79 -0.03 -3.02 16 8 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 9 C -0.11 -4.24 8.89 71.98 0.64 -3.60 16 10 C 0.03 1.67 4.45 29.85 0.13 1.81 16 11 C -0.53 -29.87 8.41 25.60 0.22 -29.66 16 12 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 13 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 14 N -0.94 -57.23 13.29 21.45 0.28 -56.94 16 15 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 C 0.05 0.98 7.60 72.30 0.55 1.53 16 20 O -0.40 -9.37 10.87 -148.98 -1.62 -10.99 16 21 C 0.04 0.73 7.58 72.29 0.55 1.28 16 22 H 0.05 0.86 6.53 -2.39 -0.02 0.84 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 0.84 6.53 -2.38 -0.02 0.83 16 25 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.34 8.43 6.44 -89.69 -0.58 7.85 16 30 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.07 2.18 7.75 -2.38 -0.02 2.16 16 33 H 0.04 1.47 6.95 -2.39 -0.02 1.45 16 34 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 35 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 36 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 37 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 38 H 0.09 2.03 7.28 -2.39 -0.02 2.01 16 39 H 0.09 1.66 7.33 -2.39 -0.02 1.65 16 40 H 0.10 1.61 7.32 -2.39 -0.02 1.59 16 41 H 0.08 1.54 5.97 -2.39 -0.01 1.53 16 Total: -1.00 -63.18 317.86 2.76 -60.41 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.41 Total: 12.44 kcal Atomic # 6 Polarization: -35.59 SS G_CDS: 4.15 Total: -31.45 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -2.19 Total: -77.05 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -1.62 Total: -10.99 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -63.18 2.76 -60.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602684772.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.120 kcal (2) G-P(sol) polarization free energy of solvation -63.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds