Wall clock time and date at job start Sun Mar 29 2020 22:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47054 * 2 1 4 4 C 1.52998 * 112.99889 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.47020 * 179.97438 * 4 3 2 6 6 C 1.46902 * 110.99573 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.46622 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47223 * 304.99930 * 7 6 5 9 9 C 1.52993 * 109.47083 * 65.00316 * 7 6 5 10 10 C 1.53008 * 109.46744 * 185.00131 * 7 6 5 11 11 C 1.50694 * 109.46650 * 175.00063 * 10 7 6 12 12 H 1.08003 * 120.00498 * 359.97438 * 11 10 7 13 13 C 1.37876 * 119.99879 * 179.97438 * 11 10 7 14 14 N 1.31519 * 119.99776 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00416 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47086 * 89.99690 * 15 13 11 17 17 H 1.48495 * 109.47382 * 210.00139 * 15 13 11 18 18 H 1.48503 * 109.47045 * 330.00007 * 15 13 11 19 19 C 1.54043 * 113.81428 * 311.82636 * 3 2 1 20 20 O 1.44443 * 85.42416 * 91.81405 * 19 3 2 21 21 C 1.44178 * 93.38187 * 24.08735 * 20 19 3 22 22 H 1.08996 * 109.47121 * 59.99682 * 1 2 3 23 23 H 1.09000 * 109.47290 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46705 * 299.99792 * 1 2 3 25 25 H 1.08998 * 109.46571 * 240.00047 * 2 1 3 26 26 H 1.08996 * 109.47121 * 120.00318 * 2 1 3 27 27 H 1.09002 * 109.47142 * 60.00114 * 4 3 2 28 28 H 1.09000 * 109.46991 * 299.99859 * 4 3 2 29 29 H 1.00896 * 111.00309 * 56.04370 * 5 4 3 30 30 H 1.08990 * 109.47358 * 299.99539 * 6 5 4 31 31 H 1.09004 * 109.47457 * 60.00221 * 6 5 4 32 32 H 1.08994 * 109.47490 * 59.99490 * 9 7 6 33 33 H 1.09001 * 109.47025 * 180.02562 * 9 7 6 34 34 H 1.09007 * 109.47182 * 299.99588 * 9 7 6 35 35 H 1.09005 * 109.46614 * 294.99810 * 10 7 6 36 36 H 1.08993 * 109.46898 * 55.00161 * 10 7 6 37 37 H 0.97005 * 119.99959 * 179.97438 * 14 13 11 38 38 H 1.09001 * 113.86215 * 205.91708 * 19 3 2 39 39 H 1.08992 * 113.86399 * 337.62094 * 19 3 2 40 40 H 1.09003 * 113.86036 * 221.77087 * 21 20 19 41 41 H 1.08993 * 113.86892 * 90.06704 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5671 1.5366 -0.0006 5 7 3.9706 2.9492 -0.0012 6 6 5.4339 3.0786 -0.0012 7 6 5.8147 4.5605 -0.0025 8 1 5.3343 5.0584 -0.8448 9 6 5.3512 5.2073 1.3043 10 6 7.3336 4.6966 -0.1282 11 6 7.6986 6.1533 -0.2530 12 1 6.9248 6.9067 -0.2439 13 6 9.0206 6.5244 -0.3787 14 7 9.9628 5.6069 -0.3902 15 14 9.4732 8.3300 -0.5340 16 1 9.6994 8.9017 0.8178 17 1 10.7127 8.4620 -1.3410 18 1 8.3672 9.0619 -1.2022 19 6 1.3613 2.3421 -1.0501 20 8 0.4265 2.6675 0.0018 21 6 1.3614 2.3422 1.0500 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.9610 1.0463 -0.8909 28 1 3.9617 1.0460 0.8891 29 1 3.5643 3.4416 0.7801 30 1 5.8411 2.5993 0.8889 31 1 5.8412 2.5984 -0.8910 32 1 5.8315 4.7094 2.1465 33 1 5.6221 6.2631 1.3032 34 1 4.2692 5.1103 1.3939 35 1 7.8104 4.2770 0.7576 36 1 7.6743 4.1595 -1.0133 37 1 10.8929 5.8679 -0.4790 38 1 1.9741 3.1843 -1.3715 39 1 0.9186 1.7932 -1.8811 40 1 0.9186 1.7932 1.8811 41 1 1.9742 3.1843 1.3714 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602684773.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:37 Heat of formation + Delta-G solvation = -34.809938 kcal Electronic energy + Delta-G solvation = -17781.226733 eV Core-core repulsion = 15082.610436 eV Total energy + Delta-G solvation = -2698.616298 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.01995 -36.88027 -34.34953 -33.26161 -31.90355 -29.04287 -26.87500 -26.65037 -25.52792 -24.63112 -23.08583 -21.88057 -19.08556 -18.53873 -16.82685 -16.35336 -16.15979 -15.80972 -14.84802 -14.64978 -14.58075 -14.10247 -13.46957 -13.24146 -13.06826 -12.44539 -12.41952 -12.14230 -12.01086 -11.88211 -11.51376 -11.38118 -11.27524 -10.87016 -10.78005 -10.47154 -10.41239 -10.30910 -10.15236 -9.73196 -9.50883 -9.15829 -8.96588 -8.33190 -8.19066 -5.97851 -3.99039 3.33082 3.39521 3.43091 3.69211 4.05273 4.26754 4.48883 4.65971 4.88414 5.07281 5.11146 5.34077 5.38014 5.39664 5.44443 5.52333 5.58235 5.66326 5.75963 5.77324 5.83868 5.95747 6.01328 6.05943 6.10968 6.16286 6.21559 6.24240 6.44474 6.53659 6.91378 7.09099 7.15484 7.32233 7.57876 7.69391 7.85003 8.02289 8.46078 9.07337 9.64474 11.13660 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.054728 B = 0.003971 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.495046 B = 7049.742054 C = 7279.064636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.128 4.128 4 C 0.064 3.936 5 N -0.691 5.691 6 C 0.065 3.935 7 C -0.085 4.085 8 H 0.065 0.935 9 C -0.134 4.134 10 C 0.028 3.972 11 C -0.513 4.513 12 H 0.056 0.944 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.050 3.950 20 O -0.381 6.381 21 C 0.042 3.958 22 H 0.059 0.941 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.031 0.969 29 H 0.336 0.664 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.030 0.970 35 H 0.014 0.986 36 H 0.015 0.985 37 H 0.259 0.741 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.231 -10.515 1.929 19.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.137 4.137 3 C -0.129 4.129 4 C -0.066 4.066 5 N -0.324 5.324 6 C -0.064 4.064 7 C -0.103 4.103 8 H 0.084 0.916 9 C -0.191 4.191 10 C -0.009 4.009 11 C -0.551 4.551 12 H 0.074 0.926 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.718 3.282 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.026 4.026 20 O -0.299 6.299 21 C -0.036 4.036 22 H 0.078 0.922 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.049 0.951 29 H 0.157 0.843 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.032 0.968 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.361 -10.376 1.233 19.413 hybrid contribution 0.898 0.614 0.869 1.392 sum -15.464 -9.762 2.103 18.408 Atomic orbital electron populations 1.21788 0.94999 1.00756 1.02936 1.21235 0.96447 0.93588 1.02390 1.23726 0.95678 0.96583 0.96880 1.21833 0.93265 0.90547 1.00926 1.60679 1.10968 1.10829 1.49969 1.22140 0.85387 0.98945 0.99907 1.21231 0.99948 0.91780 0.97384 0.91611 1.21743 0.97608 1.02216 0.97574 1.19107 0.87948 0.96922 0.96960 1.21239 0.91947 0.92553 1.49397 0.92556 1.25023 0.96732 0.97257 0.95550 1.69969 1.00147 1.32649 1.50929 0.86626 0.77940 0.85636 0.78001 1.20764 1.21302 1.19860 1.24127 0.89310 0.97722 0.91462 1.89669 1.32812 1.90526 1.16919 1.23996 0.90352 0.96924 0.92293 0.92191 0.93277 0.92342 0.91291 0.91559 0.90566 0.95098 0.84299 0.95783 0.91397 0.94017 0.91794 0.95111 0.96780 0.96657 0.93101 0.88140 0.90039 0.89734 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.63 37.16 0.32 -0.95 16 2 C -0.10 -0.86 5.65 -26.73 -0.15 -1.01 16 3 C -0.13 -1.31 1.38 -153.43 -0.21 -1.53 16 4 C 0.06 0.75 5.38 -3.82 -0.02 0.73 16 5 N -0.69 -9.65 5.37 -113.77 -0.61 -10.26 16 6 C 0.06 1.09 5.14 -3.82 -0.02 1.07 16 7 C -0.08 -1.70 2.55 -90.62 -0.23 -1.94 16 8 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 9 C -0.13 -2.47 8.77 37.15 0.33 -2.15 16 10 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 11 C -0.51 -14.34 8.41 -34.44 -0.29 -14.63 16 12 H 0.06 1.54 7.06 -52.48 -0.37 1.16 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 15 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 19 C 0.05 0.57 7.60 37.65 0.29 0.86 16 20 O -0.38 -4.79 10.87 -35.23 -0.38 -5.18 16 21 C 0.04 0.44 7.58 37.64 0.29 0.73 16 22 H 0.06 0.56 6.53 -51.93 -0.34 0.22 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.54 6.53 -51.93 -0.34 0.20 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.34 4.53 4.69 -39.29 -0.18 4.34 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 34 H 0.03 0.47 6.68 -51.92 -0.35 0.13 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.10 1.27 7.28 -51.93 -0.38 0.89 16 39 H 0.08 0.82 7.32 -51.93 -0.38 0.44 16 40 H 0.08 0.78 7.33 -51.93 -0.38 0.40 16 41 H 0.08 0.87 5.97 -51.93 -0.31 0.56 16 LS Contribution 315.60 15.07 4.76 4.76 Total: -1.00 -29.53 315.60 -7.62 -37.16 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.17 Total: -0.18 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 0.07 Total: -16.74 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.13 Total: -36.49 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.38 Total: -5.18 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.53 -7.62 -37.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602684773.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.346 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds