Wall clock time and date at job start Sun Mar 29 2020 22:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47566 * 2 1 4 4 H 1.09000 * 109.89374 * 54.06233 * 3 2 1 5 5 O 1.43232 * 109.82538 * 293.13553 * 3 2 1 6 6 C 1.43647 * 109.97008 * 242.19844 * 5 3 2 7 7 C 1.54951 * 105.13425 * 335.57054 * 6 5 3 8 8 C 1.54374 * 109.83219 * 175.00044 * 3 2 1 9 9 H 1.09001 * 111.02544 * 22.59902 * 8 3 2 10 10 N 1.46905 * 110.84643 * 259.05805 * 8 3 2 11 11 C 1.46901 * 110.99870 * 160.71679 * 10 8 3 12 12 C 1.53004 * 109.46916 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.47143 * 54.99734 * 12 11 10 14 14 C 1.52992 * 109.46921 * 294.99594 * 12 11 10 15 15 C 1.52997 * 109.46820 * 175.00024 * 12 11 10 16 16 C 1.50708 * 109.47042 * 185.00012 * 15 12 11 17 17 H 1.08004 * 119.99423 * 359.97438 * 16 15 12 18 18 C 1.37873 * 119.99854 * 180.02562 * 16 15 12 19 19 N 1.31515 * 119.99536 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00426 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47026 * 90.00092 * 20 18 16 22 22 H 1.48501 * 109.47212 * 210.00249 * 20 18 16 23 23 H 1.48507 * 109.46913 * 330.00428 * 20 18 16 24 24 H 1.08997 * 109.46948 * 60.00103 * 1 2 3 25 25 H 1.08995 * 109.47290 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46855 * 300.00136 * 1 2 3 27 27 H 1.08992 * 109.47233 * 239.99342 * 2 1 3 28 28 H 1.09005 * 109.47218 * 119.99998 * 2 1 3 29 29 H 1.08998 * 110.30960 * 216.66046 * 6 5 3 30 30 H 1.08997 * 110.39606 * 94.52934 * 6 5 3 31 31 H 1.08999 * 111.12482 * 278.52679 * 7 6 5 32 32 H 1.08996 * 111.12512 * 154.36349 * 7 6 5 33 33 H 1.00901 * 110.99869 * 36.76391 * 10 8 3 34 34 H 1.09004 * 109.47031 * 299.99620 * 11 10 8 35 35 H 1.08995 * 109.47111 * 59.99900 * 11 10 8 36 36 H 1.08997 * 109.47560 * 300.00527 * 14 12 11 37 37 H 1.09010 * 109.47245 * 60.00445 * 14 12 11 38 38 H 1.08999 * 109.47135 * 179.97438 * 14 12 11 39 39 H 1.09008 * 109.47139 * 304.99603 * 15 12 11 40 40 H 1.09001 * 109.47414 * 64.99548 * 15 12 11 41 41 H 0.97000 * 119.99758 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 1 1.5967 1.9927 0.8299 5 8 1.7030 2.0770 -1.2391 6 6 2.8995 2.4587 -1.9363 7 6 3.9800 2.6052 -0.8354 8 6 3.5787 1.4539 0.1266 9 1 4.0052 0.5066 -0.2031 10 7 3.9876 1.7575 1.5045 11 6 5.3726 1.3327 1.7483 12 6 5.7613 1.6640 3.1905 13 1 5.0416 1.2127 3.8736 14 6 5.7639 3.1819 3.3821 15 6 7.1576 1.1108 3.4822 16 6 7.4906 1.3285 4.9359 17 1 6.7777 1.8134 5.5863 18 6 8.7057 0.9097 5.4349 19 7 8.9960 1.0993 6.7035 20 14 9.9389 0.0717 4.3097 21 1 10.8241 1.0943 3.6966 22 1 10.7582 -0.8840 5.0975 23 1 9.2148 -0.6614 3.2403 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 2.7514 3.4086 -2.4498 30 1 3.1874 1.6852 -2.6483 31 1 3.9078 3.5738 -0.3406 32 1 4.9789 2.4473 -1.2418 33 1 3.3575 1.3353 2.1700 34 1 5.4566 0.2578 1.5875 35 1 6.0391 1.8558 1.0626 36 1 6.4834 3.6331 2.6990 37 1 4.7690 3.5761 3.1742 38 1 6.0403 3.4179 4.4097 39 1 7.1793 0.0437 3.2604 40 1 7.8898 1.6261 2.8606 41 1 9.8507 0.8043 7.0548 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602688728.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:38 Heat of formation + Delta-G solvation = -72.733385 kcal Electronic energy + Delta-G solvation = -17764.331560 eV Core-core repulsion = 15064.070778 eV Total energy + Delta-G solvation = -2700.260782 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.90590 -36.74157 -34.17725 -33.55943 -32.11989 -30.35931 -28.14109 -27.15485 -24.98443 -23.59372 -22.26659 -20.95042 -20.82925 -19.08343 -17.04209 -16.72343 -16.18671 -15.30714 -14.76741 -14.57842 -14.26193 -13.90533 -13.82882 -13.37224 -13.08995 -12.92016 -12.47772 -12.06820 -11.97412 -11.70485 -11.65301 -11.47641 -11.16506 -10.99108 -10.97265 -10.72180 -10.68373 -10.45304 -9.81977 -9.75025 -9.63538 -9.42163 -9.06943 -8.52497 -8.32233 -6.02680 -3.99696 3.30379 3.37878 3.40872 3.64845 4.12869 4.42355 4.45892 4.60638 4.90839 4.99164 5.03585 5.11477 5.20376 5.30674 5.35644 5.51929 5.57686 5.62605 5.65981 5.74265 5.78198 5.79279 5.98915 6.00500 6.05974 6.11926 6.28598 6.39111 6.56574 6.81658 6.88216 7.01355 7.12448 7.19353 7.28827 7.42525 7.51114 7.81846 8.56675 9.03045 9.60178 11.10789 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036289 B = 0.004416 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.397802 B = 6338.714012 C = 6475.410049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.081 3.919 4 H 0.089 0.911 5 O -0.376 6.376 6 C 0.050 3.950 7 C -0.146 4.146 8 C 0.055 3.945 9 H 0.057 0.943 10 N -0.673 5.673 11 C 0.062 3.938 12 C -0.074 4.074 13 H 0.060 0.940 14 C -0.125 4.125 15 C -0.009 4.009 16 C -0.513 4.513 17 H 0.074 0.926 18 C 0.065 3.935 19 N -0.905 5.905 20 Si 0.878 3.122 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.267 1.267 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.341 0.659 34 H 0.025 0.975 35 H 0.067 0.933 36 H 0.038 0.962 37 H 0.044 0.956 38 H 0.059 0.941 39 H 0.012 0.988 40 H 0.011 0.989 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.161 -0.140 -16.178 20.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C 0.023 3.977 4 H 0.107 0.893 5 O -0.295 6.295 6 C -0.026 4.026 7 C -0.184 4.184 8 C -0.055 4.055 9 H 0.075 0.925 10 N -0.305 5.305 11 C -0.067 4.067 12 C -0.093 4.093 13 H 0.079 0.921 14 C -0.182 4.182 15 C -0.047 4.047 16 C -0.551 4.551 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.544 5.544 20 Si 0.706 3.294 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.192 1.192 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.160 0.840 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.030 0.970 40 H 0.029 0.971 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.061 0.507 -16.262 20.864 hybrid contribution 1.041 -1.529 -0.374 1.887 sum -12.020 -1.022 -16.636 20.550 Atomic orbital electron populations 1.21687 0.95126 1.01340 1.02276 1.21938 0.97135 0.95934 1.02341 1.22892 0.93758 0.93334 0.87721 0.89345 1.88408 1.29601 1.78449 1.33050 1.23342 0.84716 0.99880 0.94692 1.23288 0.99019 1.00397 0.95701 1.23107 0.94021 0.97202 0.91192 0.92511 1.60553 1.04488 1.63653 1.01811 1.22235 0.88117 0.97050 0.99261 1.21013 0.98998 0.96915 0.92351 0.92147 1.21601 0.99717 0.95090 1.01779 1.19614 0.91956 0.95412 0.97702 1.21130 1.02214 1.38635 0.93114 0.90809 1.25026 0.98090 0.95595 0.94853 1.69915 1.23328 1.47902 1.13267 0.86807 0.81574 0.79884 0.81151 1.20352 1.21477 1.19199 0.92121 0.92975 0.92710 0.91691 0.91114 0.89799 0.92606 0.89208 0.90396 0.84018 0.95696 0.91475 0.94238 0.93680 0.92206 0.96988 0.97069 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.83 37.16 0.37 -0.97 16 2 C -0.14 -1.33 5.51 -26.73 -0.15 -1.48 16 3 C 0.08 0.89 3.06 -26.01 -0.08 0.81 16 4 H 0.09 1.01 7.96 -51.93 -0.41 0.60 16 5 O -0.38 -4.50 10.65 -35.23 -0.38 -4.88 16 6 C 0.05 0.50 7.78 38.19 0.30 0.80 16 7 C -0.15 -1.58 6.80 -24.48 -0.17 -1.75 16 8 C 0.06 0.64 2.80 -65.77 -0.18 0.46 16 9 H 0.06 0.67 7.62 -51.93 -0.40 0.28 16 10 N -0.67 -8.94 5.76 -104.67 -0.60 -9.54 16 11 C 0.06 0.97 4.94 -3.82 -0.02 0.96 16 12 C -0.07 -1.42 2.48 -90.62 -0.22 -1.65 16 13 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 14 C -0.12 -2.35 8.89 37.15 0.33 -2.02 16 15 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 16 C -0.51 -14.43 8.96 -34.44 -0.31 -14.74 16 17 H 0.07 2.23 7.30 -52.48 -0.38 1.85 16 18 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 19 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 20 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 24 H 0.06 0.59 7.90 -51.93 -0.41 0.18 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.34 4.30 8.46 -39.29 -0.33 3.96 16 34 H 0.02 0.39 8.09 -51.93 -0.42 -0.03 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.04 0.76 7.75 -51.92 -0.40 0.36 16 38 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 39 H 0.01 0.28 7.20 -51.92 -0.37 -0.09 16 40 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 41 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 323.28 15.07 4.87 4.87 Total: -1.00 -29.99 323.28 -8.04 -38.02 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.70 Total: -0.34 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -0.33 Total: -18.09 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.17 Total: -36.68 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.38 Total: -4.88 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.99 -8.04 -38.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602688728.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.711 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds