Wall clock time and date at job start Sun Mar 29 2020 22:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47566 * 2 1 4 4 H 1.09000 * 109.89374 * 54.06233 * 3 2 1 5 5 O 1.43232 * 109.82538 * 293.13553 * 3 2 1 6 6 C 1.43647 * 109.97008 * 242.19844 * 5 3 2 7 7 C 1.54951 * 105.13425 * 335.57054 * 6 5 3 8 8 C 1.54374 * 109.83219 * 175.00044 * 3 2 1 9 9 H 1.09001 * 111.02544 * 22.59902 * 8 3 2 10 10 N 1.46905 * 110.84643 * 259.05805 * 8 3 2 11 11 C 1.46901 * 110.99870 * 160.71679 * 10 8 3 12 12 C 1.53004 * 109.46916 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.47143 * 54.99734 * 12 11 10 14 14 C 1.52992 * 109.46921 * 294.99594 * 12 11 10 15 15 C 1.52997 * 109.46820 * 175.00024 * 12 11 10 16 16 C 1.50708 * 109.47042 * 185.00012 * 15 12 11 17 17 H 1.08004 * 119.99423 * 359.97438 * 16 15 12 18 18 C 1.37873 * 119.99854 * 180.02562 * 16 15 12 19 19 N 1.31515 * 119.99536 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00426 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47026 * 90.00092 * 20 18 16 22 22 H 1.48501 * 109.47212 * 210.00249 * 20 18 16 23 23 H 1.48507 * 109.46913 * 330.00428 * 20 18 16 24 24 H 1.08997 * 109.46948 * 60.00103 * 1 2 3 25 25 H 1.08995 * 109.47290 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46855 * 300.00136 * 1 2 3 27 27 H 1.08992 * 109.47233 * 239.99342 * 2 1 3 28 28 H 1.09005 * 109.47218 * 119.99998 * 2 1 3 29 29 H 1.08998 * 110.30960 * 216.66046 * 6 5 3 30 30 H 1.08997 * 110.39606 * 94.52934 * 6 5 3 31 31 H 1.08999 * 111.12482 * 278.52679 * 7 6 5 32 32 H 1.08996 * 111.12512 * 154.36349 * 7 6 5 33 33 H 1.00901 * 110.99869 * 36.76391 * 10 8 3 34 34 H 1.09004 * 109.47031 * 299.99620 * 11 10 8 35 35 H 1.08995 * 109.47111 * 59.99900 * 11 10 8 36 36 H 1.08997 * 109.47560 * 300.00527 * 14 12 11 37 37 H 1.09010 * 109.47245 * 60.00445 * 14 12 11 38 38 H 1.08999 * 109.47135 * 179.97438 * 14 12 11 39 39 H 1.09008 * 109.47139 * 304.99603 * 15 12 11 40 40 H 1.09001 * 109.47414 * 64.99548 * 15 12 11 41 41 H 0.97000 * 119.99758 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 1 1.5967 1.9927 0.8299 5 8 1.7030 2.0770 -1.2391 6 6 2.8995 2.4587 -1.9363 7 6 3.9800 2.6052 -0.8354 8 6 3.5787 1.4539 0.1266 9 1 4.0052 0.5066 -0.2031 10 7 3.9876 1.7575 1.5045 11 6 5.3726 1.3327 1.7483 12 6 5.7613 1.6640 3.1905 13 1 5.0416 1.2127 3.8736 14 6 5.7639 3.1819 3.3821 15 6 7.1576 1.1108 3.4822 16 6 7.4906 1.3285 4.9359 17 1 6.7777 1.8134 5.5863 18 6 8.7057 0.9097 5.4349 19 7 8.9960 1.0993 6.7035 20 14 9.9389 0.0717 4.3097 21 1 10.8241 1.0943 3.6966 22 1 10.7582 -0.8840 5.0975 23 1 9.2148 -0.6614 3.2403 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 2.7514 3.4086 -2.4498 30 1 3.1874 1.6852 -2.6483 31 1 3.9078 3.5738 -0.3406 32 1 4.9789 2.4473 -1.2418 33 1 3.3575 1.3353 2.1700 34 1 5.4566 0.2578 1.5875 35 1 6.0391 1.8558 1.0626 36 1 6.4834 3.6331 2.6990 37 1 4.7690 3.5761 3.1742 38 1 6.0403 3.4179 4.4097 39 1 7.1793 0.0437 3.2604 40 1 7.8898 1.6261 2.8606 41 1 9.8507 0.8043 7.0548 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602688728.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:38 Heat of formation + Delta-G solvation = -92.032303 kcal Electronic energy + Delta-G solvation = -17765.168424 eV Core-core repulsion = 15064.070778 eV Total energy + Delta-G solvation = -2701.097646 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.77974 -38.11712 -35.59275 -34.45622 -33.97911 -31.43860 -29.53919 -28.53966 -26.39091 -24.41978 -23.96153 -21.86693 -21.75529 -20.63700 -18.92765 -17.83891 -17.11154 -16.45722 -16.33129 -15.73943 -15.34760 -15.19895 -15.04395 -14.79281 -14.38957 -13.91925 -13.83329 -13.48673 -13.16606 -13.11984 -12.76276 -12.71167 -12.53643 -12.28421 -12.17753 -11.92854 -11.73956 -11.71086 -11.58982 -11.45272 -11.14874 -11.00590 -10.73558 -10.45409 -9.39566 -8.25757 -6.28169 1.36143 1.37521 1.49047 2.37772 2.80845 3.09596 3.12953 3.57092 3.77917 4.06525 4.12723 4.22548 4.23343 4.25593 4.31517 4.43889 4.48960 4.59242 4.78876 4.82585 4.86270 4.90437 4.93465 4.94373 4.99655 5.08194 5.09883 5.19975 5.25528 5.39626 5.39977 5.41948 5.55650 5.70442 5.73288 6.03567 6.10619 6.34775 6.42319 6.79705 7.35471 8.91097 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036289 B = 0.004416 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.397802 B = 6338.714012 C = 6475.410049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.084 3.916 4 H 0.082 0.918 5 O -0.393 6.393 6 C 0.050 3.950 7 C -0.144 4.144 8 C 0.056 3.944 9 H 0.061 0.939 10 N -0.674 5.674 11 C 0.077 3.923 12 C -0.070 4.070 13 H 0.051 0.949 14 C -0.116 4.116 15 C -0.007 4.007 16 C -0.519 4.519 17 H 0.034 0.966 18 C 0.001 3.999 19 N -0.954 5.954 20 Si 0.948 3.052 21 H -0.268 1.268 22 H -0.286 1.286 23 H -0.247 1.247 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.345 0.655 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.292 -0.888 -18.711 22.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C 0.026 3.974 4 H 0.100 0.900 5 O -0.312 6.312 6 C -0.026 4.026 7 C -0.183 4.183 8 C -0.054 4.054 9 H 0.079 0.921 10 N -0.307 5.307 11 C -0.052 4.052 12 C -0.089 4.089 13 H 0.069 0.931 14 C -0.173 4.173 15 C -0.045 4.045 16 C -0.557 4.557 17 H 0.052 0.948 18 C -0.195 4.195 19 N -0.596 5.596 20 Si 0.772 3.228 21 H -0.193 1.193 22 H -0.212 1.212 23 H -0.170 1.170 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.164 0.836 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.216 -0.236 -18.814 22.993 hybrid contribution 1.000 -1.233 0.471 1.656 sum -12.216 -1.469 -18.343 22.088 Atomic orbital electron populations 1.21667 0.94711 1.01933 1.01927 1.21925 0.97502 0.95121 1.02577 1.22853 0.93253 0.93909 0.87385 0.90011 1.88394 1.30726 1.78685 1.33388 1.23467 0.83716 1.01004 0.94460 1.23274 0.99810 0.99443 0.95745 1.23135 0.94506 0.97703 0.90081 0.92114 1.60480 1.03398 1.63741 1.03035 1.21938 0.89577 0.97348 0.96347 1.20887 0.96452 0.96680 0.94875 0.93054 1.21498 1.00950 0.95132 0.99721 1.19568 0.94577 0.95869 0.94444 1.21461 1.01446 1.37559 0.95231 0.94754 1.26001 1.00513 0.96564 0.96418 1.70076 1.24212 1.49710 1.15566 0.85691 0.78820 0.78980 0.79330 1.19329 1.21245 1.17021 0.92883 0.91933 0.92637 0.91591 0.90672 0.88528 0.91385 0.90260 0.89570 0.83557 0.95258 0.91068 0.93786 0.91618 0.95534 0.96575 0.96521 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.83 71.98 0.71 -1.69 16 2 C -0.13 -2.35 5.51 30.60 0.17 -2.18 16 3 C 0.08 1.69 3.06 31.06 0.10 1.79 16 4 H 0.08 1.75 7.96 -2.39 -0.02 1.73 16 5 O -0.39 -8.64 10.65 -148.98 -1.59 -10.23 16 6 C 0.05 0.87 7.78 72.65 0.57 1.43 16 7 C -0.14 -2.78 6.80 32.05 0.22 -2.56 16 8 C 0.06 1.17 2.80 46.17 0.13 1.30 16 9 H 0.06 1.26 7.62 -2.39 -0.02 1.24 16 10 N -0.67 -16.46 5.76 -485.08 -2.79 -19.25 16 11 C 0.08 2.23 4.94 86.30 0.43 2.66 16 12 C -0.07 -2.62 2.48 -10.80 -0.03 -2.65 16 13 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 14 C -0.12 -4.30 8.89 71.98 0.64 -3.66 16 15 C -0.01 -0.31 3.52 29.85 0.10 -0.20 16 16 C -0.52 -29.71 8.96 25.60 0.23 -29.48 16 17 H 0.03 2.17 7.30 -2.91 -0.02 2.15 16 18 C 0.00 0.06 5.47 84.65 0.46 0.53 16 19 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 20 Si 0.95 44.32 27.47 68.60 1.88 46.20 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 24 H 0.05 0.95 7.90 -2.39 -0.02 0.94 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.35 8.04 8.46 -89.69 -0.76 7.28 16 34 H 0.03 0.84 8.09 -2.39 -0.02 0.82 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 2.14 7.75 -2.38 -0.02 2.12 16 38 H 0.03 1.13 6.95 -2.39 -0.02 1.11 16 39 H 0.02 0.72 7.20 -2.38 -0.02 0.71 16 40 H 0.02 0.74 7.57 -2.39 -0.02 0.73 16 41 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -64.61 323.28 1.68 -62.93 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.15 Total: 15.08 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 3.72 Total: -34.73 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -2.49 Total: -79.25 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -1.59 Total: -10.23 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.88 Total: 46.20 kcal Total: -64.61 1.68 -62.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602688728.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.101 kcal (2) G-P(sol) polarization free energy of solvation -64.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds