Wall clock time and date at job start Sun Mar 29 2020 22:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00464 * 2 1 4 4 H 1.09003 * 109.47213 * 22.30078 * 3 2 1 5 5 C 1.53007 * 109.47272 * 262.30578 * 3 2 1 6 6 N 1.46900 * 109.47152 * 65.55813 * 5 3 2 7 7 C 1.46895 * 111.00112 * 175.29940 * 6 5 3 8 8 C 1.52998 * 109.47532 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47188 * 300.00774 * 8 7 6 10 10 C 1.53000 * 109.46890 * 60.00216 * 8 7 6 11 11 C 1.50696 * 109.47514 * 180.02562 * 8 7 6 12 12 H 1.07998 * 119.99819 * 0.02562 * 11 8 7 13 13 C 1.37880 * 120.00122 * 180.02562 * 11 8 7 14 14 N 1.31509 * 120.00018 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99830 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47236 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47036 * 119.99832 * 15 13 11 18 18 H 1.48497 * 109.46687 * 239.99912 * 15 13 11 19 19 C 1.52997 * 109.47364 * 142.30180 * 3 2 1 20 20 C 1.52999 * 117.49770 * 8.75016 * 19 3 2 21 21 C 1.52997 * 117.50010 * 300.08984 * 19 3 2 22 22 H 1.08997 * 109.47585 * 174.21787 * 1 2 3 23 23 H 1.08998 * 109.46992 * 54.21048 * 1 2 3 24 24 H 1.09003 * 109.46307 * 294.21469 * 1 2 3 25 25 H 1.09001 * 109.47139 * 185.55855 * 5 3 2 26 26 H 1.09000 * 109.46426 * 305.56117 * 5 3 2 27 27 H 1.00903 * 111.00142 * 299.26090 * 6 5 3 28 28 H 1.08999 * 109.47498 * 300.00411 * 7 6 5 29 29 H 1.09006 * 109.46755 * 60.00016 * 7 6 5 30 30 H 1.09000 * 109.47592 * 59.99380 * 9 8 7 31 31 H 1.09000 * 109.47389 * 179.97438 * 9 8 7 32 32 H 1.09006 * 109.46673 * 299.99698 * 9 8 7 33 33 H 1.08998 * 109.47469 * 59.99878 * 10 8 7 34 34 H 1.09000 * 109.47177 * 180.02562 * 10 8 7 35 35 H 1.09000 * 109.47689 * 300.00143 * 10 8 7 36 36 H 0.96996 * 120.00334 * 180.02562 * 14 13 11 37 37 H 1.09004 * 115.54923 * 154.41851 * 19 3 2 38 38 H 1.08999 * 117.49866 * 359.97438 * 20 19 3 39 39 H 1.09006 * 117.49904 * 145.01823 * 20 19 3 40 40 H 1.09005 * 117.49996 * 214.97619 * 21 19 3 41 41 H 1.09000 * 117.49654 * 359.97422 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2896 2.0241 0.3900 5 6 2.3943 1.6927 -1.4296 6 7 1.1793 1.8211 -2.2452 7 6 1.5003 2.3006 -3.5961 8 6 0.2129 2.4207 -4.4140 9 6 -0.4626 1.0509 -4.5060 10 6 -0.7336 3.4112 -3.7328 11 6 0.5422 2.9120 -5.8000 12 1 1.5673 3.1176 -6.0706 13 6 -0.4651 3.0991 -6.7227 14 7 -1.7134 2.8482 -6.3933 15 14 -0.0567 3.7074 -8.4410 16 1 1.4093 3.9132 -8.5578 17 1 -0.4970 2.7008 -9.4402 18 1 -0.7579 4.9924 -8.6907 19 6 3.2605 1.3070 0.8821 20 6 3.7617 -0.0428 1.3994 21 6 3.0848 0.9408 2.3571 22 1 -0.3634 -1.0224 -0.1035 23 1 -0.3633 0.6010 -0.8336 24 1 -0.3632 0.4215 0.9373 25 1 2.9262 2.6441 -1.4178 26 1 3.0374 0.9220 -1.8544 27 1 0.6744 0.9482 -2.2817 28 1 1.9818 3.2762 -3.5305 29 1 2.1742 1.5947 -4.0816 30 1 -0.7008 0.6951 -3.5037 31 1 -1.3800 1.1365 -5.0884 32 1 0.2117 0.3452 -4.9914 33 1 -0.2524 4.3870 -3.6671 34 1 -1.6509 3.4965 -4.3152 35 1 -0.9718 3.0555 -2.7304 36 1 -2.4220 2.9794 -7.0425 37 1 4.0083 2.0610 0.6363 38 1 3.2007 -0.9319 1.1117 39 1 4.8394 -0.1767 1.4944 40 1 3.7173 1.4537 3.0818 41 1 2.0784 0.6992 2.6993 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602692713.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:38 Heat of formation + Delta-G solvation = -28.478119 kcal Electronic energy + Delta-G solvation = -18181.231429 eV Core-core repulsion = 15482.889700 eV Total energy + Delta-G solvation = -2698.341730 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.06120 -36.73942 -35.90820 -33.73565 -31.11526 -28.77533 -26.21431 -25.54908 -25.19131 -23.99541 -22.43922 -21.90833 -20.31731 -18.41444 -16.51957 -16.31361 -15.95621 -15.41344 -14.71662 -14.53006 -14.27095 -13.60698 -13.26132 -12.97941 -12.42675 -12.30732 -12.06548 -11.94978 -11.51435 -11.27572 -11.14189 -11.07017 -10.90763 -10.62986 -10.57480 -10.38068 -10.17348 -10.07517 -9.97540 -9.44798 -9.36431 -8.96754 -8.61040 -8.28664 -7.70163 -5.90546 -4.00641 3.30965 3.39277 3.43025 3.65687 4.00846 4.42241 4.53950 4.90034 4.97557 5.08124 5.32998 5.35098 5.44869 5.51113 5.61898 5.63167 5.68310 5.78732 5.91673 6.04782 6.06476 6.16255 6.27966 6.35816 6.45232 6.72581 6.90309 7.07823 7.17782 7.33884 7.37285 7.47262 7.73785 7.76613 7.83666 7.98253 8.21700 8.34919 8.56988 9.00893 9.64336 11.10098 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.048019 B = 0.004808 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.964505 B = 5821.918375 C = 6087.714783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.386 6.386 3 C 0.121 3.879 4 H 0.073 0.927 5 C 0.043 3.957 6 N -0.689 5.689 7 C 0.075 3.925 8 C 0.067 3.933 9 C -0.131 4.131 10 C -0.118 4.118 11 C -0.505 4.505 12 H 0.052 0.948 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.888 3.112 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.158 4.158 20 C -0.165 4.165 21 C -0.178 4.178 22 H 0.080 0.920 23 H 0.061 0.939 24 H 0.036 0.964 25 H 0.074 0.926 26 H 0.031 0.969 27 H 0.338 0.662 28 H 0.056 0.944 29 H 0.013 0.987 30 H 0.008 0.992 31 H 0.083 0.917 32 H 0.019 0.981 33 H 0.018 0.982 34 H 0.074 0.926 35 H 0.018 0.982 36 H 0.257 0.743 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.981 -4.090 13.732 15.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.305 6.305 3 C 0.063 3.937 4 H 0.091 0.909 5 C -0.087 4.087 6 N -0.322 5.322 7 C -0.053 4.053 8 C 0.067 3.933 9 C -0.189 4.189 10 C -0.176 4.176 11 C -0.544 4.544 12 H 0.070 0.930 13 C -0.136 4.136 14 N -0.524 5.524 15 Si 0.717 3.283 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.177 4.177 20 C -0.202 4.202 21 C -0.215 4.215 22 H 0.098 0.902 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.092 0.908 26 H 0.049 0.951 27 H 0.159 0.841 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.027 0.973 31 H 0.102 0.898 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.093 0.907 35 H 0.037 0.963 36 H 0.067 0.933 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.757 -3.624 13.874 15.452 hybrid contribution 0.493 -0.185 -1.418 1.512 sum 6.250 -3.809 12.456 14.447 Atomic orbital electron populations 1.22924 0.80899 1.02542 1.00758 1.87831 1.19802 1.27803 1.95077 1.21609 0.93237 0.84733 0.94117 0.90925 1.22361 0.93294 1.00109 0.92974 1.60733 1.20971 1.35219 1.15318 1.22150 0.99359 0.97689 0.86126 1.18109 0.89737 0.92805 0.92678 1.21829 1.02739 0.97116 0.97201 1.21630 1.01719 0.97148 0.97074 1.21148 0.93239 1.43847 0.96154 0.92956 1.24885 0.95064 0.95396 0.98250 1.69839 0.99141 1.49196 1.34221 0.86601 0.78403 0.78427 0.84910 1.19960 1.21167 1.21119 1.22463 0.99664 1.00285 0.95257 1.22849 0.99892 0.94394 1.03076 1.22902 1.02174 1.04172 0.92215 0.90183 0.92064 0.94523 0.90772 0.95124 0.84144 0.92589 0.96890 0.97262 0.89809 0.96199 0.96299 0.90738 0.96282 0.93267 0.86977 0.87704 0.89418 0.89132 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.40 101.05 1.05 1.37 16 2 O -0.39 -5.43 8.53 -35.23 -0.30 -5.73 16 3 C 0.12 1.64 2.80 -26.73 -0.07 1.56 16 4 H 0.07 1.00 7.73 -51.93 -0.40 0.60 16 5 C 0.04 0.66 5.36 -3.82 -0.02 0.64 16 6 N -0.69 -12.59 5.26 -113.78 -0.60 -13.18 16 7 C 0.08 1.60 4.58 -3.83 -0.02 1.59 16 8 C 0.07 1.64 0.57 -155.66 -0.09 1.55 16 9 C -0.13 -3.13 7.92 37.16 0.29 -2.84 16 10 C -0.12 -2.88 8.09 37.16 0.30 -2.58 16 11 C -0.51 -13.71 8.01 -34.44 -0.28 -13.99 16 12 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 13 C 0.06 1.76 5.15 -17.82 -0.09 1.67 16 14 N -0.88 -24.55 9.35 55.43 0.52 -24.04 16 15 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C -0.16 -1.82 5.70 -90.62 -0.52 -2.34 16 20 C -0.17 -1.79 9.88 -26.69 -0.26 -2.06 16 21 C -0.18 -1.80 10.19 -26.69 -0.27 -2.08 16 22 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.06 0.86 5.96 -51.93 -0.31 0.55 16 24 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.34 6.22 4.50 -39.29 -0.18 6.04 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.01 0.18 6.57 -51.93 -0.34 -0.16 16 31 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 35 H 0.02 0.42 7.60 -51.93 -0.39 0.02 16 36 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.11 1.18 8.11 -51.93 -0.42 0.76 16 38 H 0.10 1.26 7.06 -51.93 -0.37 0.90 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 317.94 15.07 4.79 4.79 Total: -1.00 -27.52 317.94 -7.82 -35.34 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -7.23 Total: 4.13 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 0.02 Total: -17.49 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.08 Total: -37.22 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.30 Total: -5.73 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.52 -7.82 -35.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602692713.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.861 kcal (2) G-P(sol) polarization free energy of solvation -27.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds