Wall clock time and date at job start Sun Mar 29 2020 22:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00464 * 2 1 4 4 H 1.09003 * 109.47213 * 22.30078 * 3 2 1 5 5 C 1.53007 * 109.47272 * 262.30578 * 3 2 1 6 6 N 1.46900 * 109.47152 * 65.55813 * 5 3 2 7 7 C 1.46895 * 111.00112 * 175.29940 * 6 5 3 8 8 C 1.52998 * 109.47532 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.47188 * 300.00774 * 8 7 6 10 10 C 1.53000 * 109.46890 * 60.00216 * 8 7 6 11 11 C 1.50696 * 109.47514 * 180.02562 * 8 7 6 12 12 H 1.07998 * 119.99819 * 0.02562 * 11 8 7 13 13 C 1.37880 * 120.00122 * 180.02562 * 11 8 7 14 14 N 1.31509 * 120.00018 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99830 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47236 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47036 * 119.99832 * 15 13 11 18 18 H 1.48497 * 109.46687 * 239.99912 * 15 13 11 19 19 C 1.52997 * 109.47364 * 142.30180 * 3 2 1 20 20 C 1.52999 * 117.49770 * 8.75016 * 19 3 2 21 21 C 1.52997 * 117.50010 * 300.08984 * 19 3 2 22 22 H 1.08997 * 109.47585 * 174.21787 * 1 2 3 23 23 H 1.08998 * 109.46992 * 54.21048 * 1 2 3 24 24 H 1.09003 * 109.46307 * 294.21469 * 1 2 3 25 25 H 1.09001 * 109.47139 * 185.55855 * 5 3 2 26 26 H 1.09000 * 109.46426 * 305.56117 * 5 3 2 27 27 H 1.00903 * 111.00142 * 299.26090 * 6 5 3 28 28 H 1.08999 * 109.47498 * 300.00411 * 7 6 5 29 29 H 1.09006 * 109.46755 * 60.00016 * 7 6 5 30 30 H 1.09000 * 109.47592 * 59.99380 * 9 8 7 31 31 H 1.09000 * 109.47389 * 179.97438 * 9 8 7 32 32 H 1.09006 * 109.46673 * 299.99698 * 9 8 7 33 33 H 1.08998 * 109.47469 * 59.99878 * 10 8 7 34 34 H 1.09000 * 109.47177 * 180.02562 * 10 8 7 35 35 H 1.09000 * 109.47689 * 300.00143 * 10 8 7 36 36 H 0.96996 * 120.00334 * 180.02562 * 14 13 11 37 37 H 1.09004 * 115.54923 * 154.41851 * 19 3 2 38 38 H 1.08999 * 117.49866 * 359.97438 * 20 19 3 39 39 H 1.09006 * 117.49904 * 145.01823 * 20 19 3 40 40 H 1.09005 * 117.49996 * 214.97619 * 21 19 3 41 41 H 1.09000 * 117.49654 * 359.97422 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2896 2.0241 0.3900 5 6 2.3943 1.6927 -1.4296 6 7 1.1793 1.8211 -2.2452 7 6 1.5003 2.3006 -3.5961 8 6 0.2129 2.4207 -4.4140 9 6 -0.4626 1.0509 -4.5060 10 6 -0.7336 3.4112 -3.7328 11 6 0.5422 2.9120 -5.8000 12 1 1.5673 3.1176 -6.0706 13 6 -0.4651 3.0991 -6.7227 14 7 -1.7134 2.8482 -6.3933 15 14 -0.0567 3.7074 -8.4410 16 1 1.4093 3.9132 -8.5578 17 1 -0.4970 2.7008 -9.4402 18 1 -0.7579 4.9924 -8.6907 19 6 3.2605 1.3070 0.8821 20 6 3.7617 -0.0428 1.3994 21 6 3.0848 0.9408 2.3571 22 1 -0.3634 -1.0224 -0.1035 23 1 -0.3633 0.6010 -0.8336 24 1 -0.3632 0.4215 0.9373 25 1 2.9262 2.6441 -1.4178 26 1 3.0374 0.9220 -1.8544 27 1 0.6744 0.9482 -2.2817 28 1 1.9818 3.2762 -3.5305 29 1 2.1742 1.5947 -4.0816 30 1 -0.7008 0.6951 -3.5037 31 1 -1.3800 1.1365 -5.0884 32 1 0.2117 0.3452 -4.9914 33 1 -0.2524 4.3870 -3.6671 34 1 -1.6509 3.4965 -4.3152 35 1 -0.9718 3.0555 -2.7304 36 1 -2.4220 2.9794 -7.0425 37 1 4.0083 2.0610 0.6363 38 1 3.2007 -0.9319 1.1117 39 1 4.8394 -0.1767 1.4944 40 1 3.7173 1.4537 3.0818 41 1 2.0784 0.6992 2.6993 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602692713.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:37 Heat of formation + Delta-G solvation = -43.681817 kcal Electronic energy + Delta-G solvation = -18181.890711 eV Core-core repulsion = 15482.889700 eV Total energy + Delta-G solvation = -2699.001011 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.13417 -38.42468 -36.87763 -35.39566 -32.97749 -30.07359 -27.56032 -27.37549 -27.16227 -25.52644 -23.45613 -23.00439 -21.32158 -20.27700 -17.97439 -17.64044 -17.35008 -16.82541 -16.33757 -15.74987 -15.50645 -15.19145 -14.73070 -14.34532 -13.97251 -13.90046 -13.55572 -13.31164 -13.01851 -12.93203 -12.55885 -12.46651 -12.30186 -12.24157 -12.11699 -12.05080 -11.99407 -11.33630 -11.26211 -11.02286 -10.90064 -10.61144 -10.35550 -10.32223 -9.22602 -7.97251 -6.14032 1.41057 1.44351 1.53815 2.46242 2.73188 3.07002 3.24911 3.32596 3.92413 4.01923 4.11309 4.34507 4.35833 4.45452 4.54151 4.59001 4.65374 4.67748 4.77477 4.85698 4.86228 4.94315 4.98530 5.02654 5.09854 5.16310 5.26971 5.29616 5.41064 5.41858 5.51986 5.69536 5.75637 6.13562 6.22238 6.29619 6.32130 6.47720 6.59544 6.94810 7.53534 9.01217 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.048019 B = 0.004808 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.964505 B = 5821.918375 C = 6087.714783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.396 6.396 3 C 0.126 3.874 4 H 0.070 0.930 5 C 0.044 3.956 6 N -0.687 5.687 7 C 0.089 3.911 8 C 0.058 3.942 9 C -0.119 4.119 10 C -0.104 4.104 11 C -0.526 4.526 12 H 0.044 0.956 13 C 0.023 3.977 14 N -0.903 5.903 15 Si 0.945 3.055 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.169 4.169 20 C -0.167 4.167 21 C -0.165 4.165 22 H 0.094 0.906 23 H 0.044 0.956 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.024 0.976 27 H 0.338 0.662 28 H 0.051 0.949 29 H 0.004 0.996 30 H 0.031 0.969 31 H 0.057 0.943 32 H 0.014 0.986 33 H 0.011 0.989 34 H 0.049 0.951 35 H 0.034 0.966 36 H 0.258 0.742 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.774 -4.165 14.821 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.316 6.316 3 C 0.068 3.932 4 H 0.088 0.912 5 C -0.086 4.086 6 N -0.320 5.320 7 C -0.040 4.040 8 C 0.057 3.943 9 C -0.177 4.177 10 C -0.162 4.162 11 C -0.565 4.565 12 H 0.062 0.938 13 C -0.176 4.176 14 N -0.542 5.542 15 Si 0.772 3.228 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.188 4.188 20 C -0.204 4.204 21 C -0.202 4.202 22 H 0.112 0.888 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.043 0.957 27 H 0.158 0.842 28 H 0.070 0.930 29 H 0.023 0.977 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.141 0.859 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.128 0.872 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.553 -3.704 14.975 16.761 hybrid contribution 0.234 -0.183 -1.724 1.749 sum 6.788 -3.886 13.251 15.388 Atomic orbital electron populations 1.22998 0.80241 1.03279 1.00765 1.87832 1.20584 1.28089 1.95047 1.21542 0.94151 0.84494 0.92979 0.91187 1.22451 0.92042 1.00366 0.93732 1.60685 1.22366 1.35248 1.13659 1.21840 0.97428 0.97432 0.87345 1.18168 0.91139 0.92793 0.92189 1.21658 1.01203 0.96891 0.97973 1.21453 1.00401 0.96918 0.97396 1.21447 0.92926 1.44324 0.97805 0.93805 1.25529 0.95044 0.95636 1.01415 1.69962 0.99660 1.49492 1.35092 0.85709 0.78152 0.77907 0.81030 1.19738 1.20862 1.20821 1.22466 0.99134 1.01174 0.96034 1.22868 1.00676 0.93570 1.03293 1.22968 1.02318 1.03258 0.91648 0.88799 0.93758 0.93108 0.90097 0.95731 0.84168 0.93042 0.97729 0.95003 0.92380 0.96700 0.96971 0.93236 0.94726 0.93293 0.85942 0.89113 0.87963 0.87220 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 10.40 113.37 1.18 1.73 16 2 O -0.40 -10.56 8.53 -148.98 -1.27 -11.83 16 3 C 0.13 3.21 2.80 30.60 0.09 3.30 16 4 H 0.07 1.82 7.73 -2.39 -0.02 1.80 16 5 C 0.04 1.30 5.36 86.31 0.46 1.76 16 6 N -0.69 -24.38 5.26 -513.88 -2.70 -27.09 16 7 C 0.09 3.74 4.58 86.30 0.40 4.14 16 8 C 0.06 2.81 0.57 -52.93 -0.03 2.78 16 9 C -0.12 -5.69 7.92 71.98 0.57 -5.12 16 10 C -0.10 -5.06 8.09 71.98 0.58 -4.48 16 11 C -0.53 -28.70 8.01 25.60 0.21 -28.49 16 12 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 13 C 0.02 1.24 5.15 84.66 0.44 1.68 16 14 N -0.90 -50.43 9.35 21.45 0.20 -50.23 16 15 Si 0.95 43.52 29.54 68.60 2.03 45.55 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 C -0.17 -3.54 5.70 -10.80 -0.06 -3.60 16 20 C -0.17 -3.28 9.88 30.62 0.30 -2.97 16 21 C -0.17 -2.92 10.19 30.62 0.31 -2.61 16 22 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.04 1.19 5.96 -2.39 -0.01 1.18 16 24 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.08 2.29 8.13 -2.39 -0.02 2.27 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.34 12.07 4.50 -89.69 -0.40 11.66 16 28 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 30 H 0.03 1.32 6.57 -2.39 -0.02 1.31 16 31 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 32 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 2.66 6.07 -2.39 -0.01 2.64 16 35 H 0.03 1.53 7.60 -2.39 -0.02 1.51 16 36 H 0.26 13.80 8.31 -92.71 -0.77 13.02 16 37 H 0.12 2.29 8.11 -2.39 -0.02 2.27 16 38 H 0.09 2.05 7.06 -2.39 -0.02 2.04 16 39 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -57.46 317.94 3.27 -54.18 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.58 Total: 21.28 kcal Atomic # 6 Polarization: -36.32 SS G_CDS: 4.44 Total: -31.88 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -2.50 Total: -77.31 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -1.27 Total: -11.83 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -57.46 3.27 -54.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602692713.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.503 kcal (2) G-P(sol) polarization free energy of solvation -57.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds