Wall clock time and date at job start Sun Mar 29 2020 22:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99938 * 2 1 4 4 H 1.08997 * 109.47073 * 34.66286 * 3 2 1 5 5 C 1.53002 * 109.47008 * 154.66182 * 3 2 1 6 6 N 1.46897 * 109.47314 * 300.00118 * 5 3 2 7 7 C 1.46898 * 111.00444 * 179.97438 * 6 5 3 8 8 C 1.52997 * 109.47230 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47163 * 300.00027 * 8 7 6 10 10 C 1.52995 * 109.47329 * 60.00476 * 8 7 6 11 11 C 1.50706 * 109.46819 * 179.97438 * 8 7 6 12 12 H 1.07993 * 120.00145 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99615 * 179.97438 * 11 8 7 14 14 N 1.31508 * 120.00514 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99653 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47025 * 60.00402 * 15 13 11 17 17 H 1.48501 * 109.46961 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47252 * 300.00317 * 15 13 11 19 19 C 1.53004 * 109.47196 * 274.66198 * 3 2 1 20 20 C 1.53000 * 117.51554 * 105.95843 * 19 3 2 21 21 C 1.52998 * 60.00005 * 107.48030 * 20 19 3 22 22 H 1.08997 * 109.47357 * 184.98630 * 1 2 3 23 23 H 1.08995 * 109.47066 * 304.99356 * 1 2 3 24 24 H 1.09009 * 109.46702 * 64.98829 * 1 2 3 25 25 H 1.08997 * 109.47119 * 60.00132 * 5 3 2 26 26 H 1.09001 * 109.47062 * 179.97438 * 5 3 2 27 27 H 1.00907 * 110.99965 * 56.04506 * 6 5 3 28 28 H 1.09000 * 109.46744 * 300.00254 * 7 6 5 29 29 H 1.08997 * 109.47116 * 59.99692 * 7 6 5 30 30 H 1.08991 * 109.47116 * 60.00045 * 9 8 7 31 31 H 1.09002 * 109.46869 * 180.02562 * 9 8 7 32 32 H 1.09001 * 109.47306 * 299.99924 * 9 8 7 33 33 H 1.09000 * 109.47378 * 59.99283 * 10 8 7 34 34 H 1.08999 * 109.47527 * 180.02562 * 10 8 7 35 35 H 1.09004 * 109.46845 * 299.99770 * 10 8 7 36 36 H 0.96999 * 120.00378 * 179.97438 * 14 13 11 37 37 H 1.09000 * 115.54742 * 320.25178 * 19 3 2 38 38 H 1.09004 * 117.49186 * 214.97109 * 20 19 3 39 39 H 1.08998 * 117.50002 * 359.97438 * 20 19 3 40 40 H 1.08999 * 117.49536 * 252.50654 * 21 20 19 41 41 H 1.09003 * 117.50024 * 107.48935 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3858 1.9812 0.5845 5 6 3.4087 1.2411 0.6173 6 7 3.3124 0.7480 1.9977 7 6 4.6392 0.6722 2.6235 8 6 4.4983 0.1564 4.0570 9 6 3.6106 1.1112 4.8577 10 6 3.8633 -1.2354 4.0381 11 6 5.8596 0.0781 4.6988 12 1 6.7374 0.3677 4.1402 13 6 5.9843 -0.3623 5.9993 14 7 4.9154 -0.7145 6.6797 15 14 7.6717 -0.4586 6.7950 16 1 8.2883 0.8921 6.8130 17 1 7.5349 -0.9594 8.1864 18 1 8.5331 -1.3857 6.0182 19 6 2.1105 1.8191 -1.4378 20 6 1.1213 2.9025 -1.8720 21 6 2.5918 3.2570 -1.6423 22 1 -0.3634 -1.0237 0.0893 23 1 -0.3633 0.5893 0.8418 24 1 -0.3633 0.4345 -0.9314 25 1 4.0331 0.5654 0.0329 26 1 3.8522 2.2368 0.6169 27 1 2.8459 -0.1462 2.0305 28 1 5.2718 -0.0077 2.0528 29 1 5.0915 1.6638 2.6374 30 1 2.6261 1.1674 4.3934 31 1 3.5106 0.7439 5.8790 32 1 4.0630 2.1028 4.8712 33 1 4.4957 -1.9157 3.4676 34 1 3.7625 -1.6028 5.0594 35 1 2.8787 -1.1793 3.5737 36 1 5.0032 -1.0247 7.5945 37 1 2.4053 1.0791 -2.1818 38 1 0.7651 2.8752 -2.9018 39 1 0.3985 3.2492 -1.1335 40 1 2.8365 3.8372 -0.7526 41 1 3.2031 3.4630 -2.5209 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602692715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:40 Heat of formation + Delta-G solvation = -30.966733 kcal Electronic energy + Delta-G solvation = -18044.311561 eV Core-core repulsion = 15345.861917 eV Total energy + Delta-G solvation = -2698.449644 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.01267 -36.66476 -36.20777 -33.73876 -31.07165 -28.61114 -26.07447 -25.48603 -25.15574 -24.07227 -22.72101 -21.86042 -20.33943 -18.34965 -17.00463 -16.00519 -15.64283 -15.37846 -14.83396 -14.48178 -14.34591 -13.79033 -13.48750 -12.97715 -12.40461 -12.23820 -11.97759 -11.70587 -11.62184 -11.43454 -11.23957 -11.03167 -10.88196 -10.60908 -10.56569 -10.46524 -10.14830 -10.06777 -10.00477 -9.53190 -9.31324 -8.95664 -8.56532 -8.23574 -7.60485 -5.85827 -3.96118 3.36158 3.40663 3.43420 3.58666 3.86970 4.46027 4.54999 4.75869 4.88015 5.10409 5.20183 5.36522 5.39330 5.42787 5.47634 5.55415 5.65049 5.72434 5.75470 5.90782 5.96328 6.10178 6.17036 6.41408 6.50462 6.80029 6.97345 7.15921 7.25182 7.30028 7.44399 7.53903 7.81126 7.82160 7.89546 8.10917 8.28747 8.40962 8.62072 9.05188 9.68443 11.14639 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.040750 B = 0.004850 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.956334 B = 5772.113397 C = 6137.036675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.123 3.877 4 H 0.068 0.932 5 C 0.067 3.933 6 N -0.686 5.686 7 C 0.075 3.925 8 C 0.068 3.932 9 C -0.118 4.118 10 C -0.131 4.131 11 C -0.506 4.506 12 H 0.051 0.949 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.888 3.112 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.279 1.279 19 C -0.176 4.176 20 C -0.182 4.182 21 C -0.172 4.172 22 H 0.081 0.919 23 H 0.042 0.958 24 H 0.037 0.963 25 H 0.029 0.971 26 H 0.078 0.922 27 H 0.345 0.655 28 H 0.012 0.988 29 H 0.054 0.946 30 H 0.019 0.981 31 H 0.073 0.927 32 H 0.017 0.983 33 H 0.018 0.982 34 H 0.082 0.918 35 H 0.012 0.988 36 H 0.258 0.742 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.939 4.572 -14.031 16.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.297 6.297 3 C 0.065 3.935 4 H 0.086 0.914 5 C -0.063 4.063 6 N -0.319 5.319 7 C -0.053 4.053 8 C 0.068 3.932 9 C -0.176 4.176 10 C -0.189 4.189 11 C -0.545 4.545 12 H 0.069 0.931 13 C -0.136 4.136 14 N -0.524 5.524 15 Si 0.717 3.283 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.205 1.205 19 C -0.195 4.195 20 C -0.219 4.219 21 C -0.209 4.209 22 H 0.100 0.900 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.096 0.904 27 H 0.165 0.835 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.092 0.908 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.101 0.899 35 H 0.030 0.970 36 H 0.068 0.932 37 H 0.126 0.874 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.016 4.947 -13.571 16.520 hybrid contribution 1.170 -0.589 -0.140 1.318 sum -6.846 4.357 -13.711 15.932 Atomic orbital electron populations 1.22726 0.81404 1.02406 0.99716 1.87895 1.19490 1.27624 1.94740 1.21772 0.95508 0.84586 0.91653 0.91449 1.21917 0.93522 1.00612 0.90285 1.60605 1.22198 1.34563 1.14562 1.22137 0.86965 0.99024 0.97166 1.18089 0.94811 0.91881 0.88448 1.21630 0.96322 0.97277 1.02363 1.21819 0.95652 0.98726 1.02720 1.21084 0.92300 1.43480 0.97615 0.93096 1.24880 0.96216 0.95315 0.97149 1.69826 1.27574 1.44682 1.10314 0.86727 0.84978 0.78277 0.78349 1.20437 1.21390 1.20496 1.22912 1.04953 0.92425 0.99209 1.23006 0.92967 1.03695 1.02210 1.22899 0.96925 0.97565 1.03493 0.90015 0.93891 0.94456 0.95323 0.90404 0.83517 0.96940 0.92756 0.96169 0.90782 0.96388 0.96250 0.89924 0.96950 0.93191 0.87404 0.88981 0.88871 0.88363 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.84 101.05 1.10 1.48 16 2 O -0.38 -5.50 9.70 -35.23 -0.34 -5.85 16 3 C 0.12 1.67 2.56 -26.73 -0.07 1.60 16 4 H 0.07 0.92 7.58 -51.93 -0.39 0.53 16 5 C 0.07 1.05 5.31 -3.82 -0.02 1.03 16 6 N -0.69 -13.02 5.71 -113.79 -0.65 -13.67 16 7 C 0.08 1.65 4.59 -3.83 -0.02 1.63 16 8 C 0.07 1.70 0.57 -155.66 -0.09 1.61 16 9 C -0.12 -2.95 8.09 37.16 0.30 -2.65 16 10 C -0.13 -3.22 7.92 37.16 0.29 -2.93 16 11 C -0.51 -13.91 8.01 -34.44 -0.28 -14.19 16 12 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 13 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 14 N -0.89 -24.88 9.35 55.43 0.52 -24.37 16 15 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C -0.18 -1.97 5.30 -90.62 -0.48 -2.45 16 20 C -0.18 -1.70 10.18 -26.73 -0.27 -1.97 16 21 C -0.17 -1.68 9.82 -26.73 -0.26 -1.95 16 22 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.04 0.47 7.97 -51.93 -0.41 0.06 16 24 H 0.04 0.36 8.12 -51.92 -0.42 -0.06 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.08 1.17 7.67 -51.93 -0.40 0.77 16 27 H 0.34 6.77 6.16 -39.29 -0.24 6.52 16 28 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 31 H 0.07 2.01 6.07 -51.93 -0.32 1.70 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 35 H 0.01 0.26 6.57 -51.93 -0.34 -0.08 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 40 H 0.10 0.99 7.96 -51.93 -0.41 0.57 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 323.15 15.07 4.87 4.87 Total: -1.00 -28.17 323.15 -7.93 -36.09 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.41 Total: 3.64 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 0.11 Total: -17.09 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: -0.13 Total: -38.04 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.34 Total: -5.85 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.17 -7.93 -36.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602692715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.126 kcal (2) G-P(sol) polarization free energy of solvation -28.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds