Wall clock time and date at job start Sun Mar 29 2020 22:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99938 * 2 1 4 4 H 1.08997 * 109.47073 * 34.66286 * 3 2 1 5 5 C 1.53002 * 109.47008 * 154.66182 * 3 2 1 6 6 N 1.46897 * 109.47314 * 300.00118 * 5 3 2 7 7 C 1.46898 * 111.00444 * 179.97438 * 6 5 3 8 8 C 1.52997 * 109.47230 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47163 * 300.00027 * 8 7 6 10 10 C 1.52995 * 109.47329 * 60.00476 * 8 7 6 11 11 C 1.50706 * 109.46819 * 179.97438 * 8 7 6 12 12 H 1.07993 * 120.00145 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99615 * 179.97438 * 11 8 7 14 14 N 1.31508 * 120.00514 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99653 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47025 * 60.00402 * 15 13 11 17 17 H 1.48501 * 109.46961 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47252 * 300.00317 * 15 13 11 19 19 C 1.53004 * 109.47196 * 274.66198 * 3 2 1 20 20 C 1.53000 * 117.51554 * 105.95843 * 19 3 2 21 21 C 1.52998 * 60.00005 * 107.48030 * 20 19 3 22 22 H 1.08997 * 109.47357 * 184.98630 * 1 2 3 23 23 H 1.08995 * 109.47066 * 304.99356 * 1 2 3 24 24 H 1.09009 * 109.46702 * 64.98829 * 1 2 3 25 25 H 1.08997 * 109.47119 * 60.00132 * 5 3 2 26 26 H 1.09001 * 109.47062 * 179.97438 * 5 3 2 27 27 H 1.00907 * 110.99965 * 56.04506 * 6 5 3 28 28 H 1.09000 * 109.46744 * 300.00254 * 7 6 5 29 29 H 1.08997 * 109.47116 * 59.99692 * 7 6 5 30 30 H 1.08991 * 109.47116 * 60.00045 * 9 8 7 31 31 H 1.09002 * 109.46869 * 180.02562 * 9 8 7 32 32 H 1.09001 * 109.47306 * 299.99924 * 9 8 7 33 33 H 1.09000 * 109.47378 * 59.99283 * 10 8 7 34 34 H 1.08999 * 109.47527 * 180.02562 * 10 8 7 35 35 H 1.09004 * 109.46845 * 299.99770 * 10 8 7 36 36 H 0.96999 * 120.00378 * 179.97438 * 14 13 11 37 37 H 1.09000 * 115.54742 * 320.25178 * 19 3 2 38 38 H 1.09004 * 117.49186 * 214.97109 * 20 19 3 39 39 H 1.08998 * 117.50002 * 359.97438 * 20 19 3 40 40 H 1.08999 * 117.49536 * 252.50654 * 21 20 19 41 41 H 1.09003 * 117.50024 * 107.48935 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3858 1.9812 0.5845 5 6 3.4087 1.2411 0.6173 6 7 3.3124 0.7480 1.9977 7 6 4.6392 0.6722 2.6235 8 6 4.4983 0.1564 4.0570 9 6 3.6106 1.1112 4.8577 10 6 3.8633 -1.2354 4.0381 11 6 5.8596 0.0781 4.6988 12 1 6.7374 0.3677 4.1402 13 6 5.9843 -0.3623 5.9993 14 7 4.9154 -0.7145 6.6797 15 14 7.6717 -0.4586 6.7950 16 1 8.2883 0.8921 6.8130 17 1 7.5349 -0.9594 8.1864 18 1 8.5331 -1.3857 6.0182 19 6 2.1105 1.8191 -1.4378 20 6 1.1213 2.9025 -1.8720 21 6 2.5918 3.2570 -1.6423 22 1 -0.3634 -1.0237 0.0893 23 1 -0.3633 0.5893 0.8418 24 1 -0.3633 0.4345 -0.9314 25 1 4.0331 0.5654 0.0329 26 1 3.8522 2.2368 0.6169 27 1 2.8459 -0.1462 2.0305 28 1 5.2718 -0.0077 2.0528 29 1 5.0915 1.6638 2.6374 30 1 2.6261 1.1674 4.3934 31 1 3.5106 0.7439 5.8790 32 1 4.0630 2.1028 4.8712 33 1 4.4957 -1.9157 3.4676 34 1 3.7625 -1.6028 5.0594 35 1 2.8787 -1.1793 3.5737 36 1 5.0032 -1.0247 7.5945 37 1 2.4053 1.0791 -2.1818 38 1 0.7651 2.8752 -2.9018 39 1 0.3985 3.2492 -1.1335 40 1 2.8365 3.8372 -0.7526 41 1 3.2031 3.4630 -2.5209 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602692715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:39 Heat of formation + Delta-G solvation = -47.226190 kcal Electronic energy + Delta-G solvation = -18045.016624 eV Core-core repulsion = 15345.861917 eV Total energy + Delta-G solvation = -2699.154707 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.03857 -38.41517 -37.10646 -35.42787 -32.96236 -29.91280 -27.50236 -27.24467 -27.06796 -25.60479 -23.74382 -22.90365 -21.33275 -20.26719 -18.00331 -17.91762 -17.04422 -16.64840 -16.30843 -15.65792 -15.64692 -15.25361 -14.79602 -14.43189 -14.11138 -13.92964 -13.48597 -13.07833 -12.96156 -12.73154 -12.62252 -12.44362 -12.36726 -12.35095 -12.19924 -12.06150 -12.00573 -11.32528 -11.29027 -11.13930 -10.83690 -10.59919 -10.40762 -10.32973 -9.17149 -7.95042 -6.12246 1.44988 1.45035 1.52397 2.47706 2.74733 2.92111 3.26724 3.40267 3.89931 4.04156 4.05433 4.16294 4.36692 4.52446 4.55224 4.58031 4.63212 4.68262 4.76619 4.80715 4.87883 4.90470 4.98843 5.01566 5.04571 5.18905 5.22447 5.26088 5.29537 5.44218 5.53723 5.70734 5.77298 6.17589 6.24408 6.33289 6.34683 6.50343 6.64875 6.96618 7.55080 9.03114 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.040750 B = 0.004850 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.956334 B = 5772.113397 C = 6137.036675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.404 6.404 3 C 0.130 3.870 4 H 0.065 0.935 5 C 0.066 3.934 6 N -0.686 5.686 7 C 0.089 3.911 8 C 0.058 3.942 9 C -0.104 4.104 10 C -0.119 4.119 11 C -0.528 4.528 12 H 0.045 0.955 13 C 0.022 3.978 14 N -0.904 5.904 15 Si 0.946 3.054 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.276 1.276 19 C -0.188 4.188 20 C -0.168 4.168 21 C -0.170 4.170 22 H 0.091 0.909 23 H 0.043 0.957 24 H 0.053 0.947 25 H 0.023 0.977 26 H 0.085 0.915 27 H 0.341 0.659 28 H 0.005 0.995 29 H 0.051 0.949 30 H 0.032 0.968 31 H 0.049 0.951 32 H 0.012 0.988 33 H 0.014 0.986 34 H 0.057 0.943 35 H 0.030 0.970 36 H 0.258 0.742 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 5.227 -15.237 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.323 6.323 3 C 0.072 3.928 4 H 0.083 0.917 5 C -0.063 4.063 6 N -0.318 5.318 7 C -0.040 4.040 8 C 0.058 3.942 9 C -0.162 4.162 10 C -0.177 4.177 11 C -0.566 4.566 12 H 0.063 0.937 13 C -0.177 4.177 14 N -0.543 5.543 15 Si 0.772 3.228 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.202 1.202 19 C -0.207 4.207 20 C -0.204 4.204 21 C -0.207 4.207 22 H 0.110 0.890 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.103 0.897 27 H 0.161 0.839 28 H 0.023 0.977 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.373 5.610 -14.790 17.898 hybrid contribution 1.236 -0.792 0.213 1.484 sum -7.137 4.818 -14.577 16.931 Atomic orbital electron populations 1.22879 0.79804 1.03318 1.00584 1.87850 1.21307 1.28173 1.94977 1.21642 0.93799 0.84413 0.92969 0.91677 1.22011 0.95394 1.00533 0.88369 1.60550 1.20322 1.34228 1.16709 1.21829 0.88321 0.98325 0.95490 1.18156 0.93779 0.92120 0.90181 1.21453 0.96989 0.96742 1.00997 1.21649 0.96570 0.98359 1.01119 1.21398 0.93293 1.43800 0.98158 0.93707 1.25545 0.99371 0.95085 0.97670 1.69958 1.29080 1.44861 1.10357 0.85812 0.81176 0.78291 0.77474 1.20034 1.21029 1.20171 1.22748 1.07304 0.93093 0.97576 1.23087 0.92690 1.01525 1.03135 1.22982 0.97697 0.96130 1.03895 0.89027 0.93858 0.92850 0.95866 0.89653 0.83933 0.97707 0.93049 0.94858 0.93243 0.96918 0.96709 0.92449 0.95076 0.93300 0.87696 0.87395 0.88526 0.88714 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.84 113.37 1.23 1.86 16 2 O -0.40 -11.22 9.70 -148.98 -1.44 -12.66 16 3 C 0.13 3.33 2.56 30.60 0.08 3.41 16 4 H 0.07 1.68 7.58 -2.39 -0.02 1.67 16 5 C 0.07 2.02 5.31 86.30 0.46 2.48 16 6 N -0.69 -25.45 5.71 -513.91 -2.94 -28.38 16 7 C 0.09 3.86 4.59 86.30 0.40 4.26 16 8 C 0.06 2.90 0.57 -52.93 -0.03 2.87 16 9 C -0.10 -5.19 8.09 71.98 0.58 -4.60 16 10 C -0.12 -5.85 7.92 71.98 0.57 -5.28 16 11 C -0.53 -29.11 8.01 25.60 0.21 -28.91 16 12 H 0.04 2.46 7.74 -2.91 -0.02 2.44 16 13 C 0.02 1.23 5.15 84.66 0.44 1.66 16 14 N -0.90 -51.16 9.35 21.45 0.20 -50.95 16 15 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 16 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 C -0.19 -3.86 5.30 -10.79 -0.06 -3.92 16 20 C -0.17 -2.68 10.18 30.59 0.31 -2.36 16 21 C -0.17 -2.95 9.82 30.59 0.30 -2.64 16 22 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.04 0.88 7.97 -2.39 -0.02 0.86 16 24 H 0.05 0.92 8.12 -2.38 -0.02 0.90 16 25 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.09 2.45 7.67 -2.39 -0.02 2.43 16 27 H 0.34 13.10 6.16 -89.69 -0.55 12.55 16 28 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.03 1.52 7.60 -2.39 -0.02 1.50 16 31 H 0.05 2.70 6.07 -2.39 -0.01 2.69 16 32 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 35 H 0.03 1.36 6.57 -2.38 -0.02 1.35 16 36 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 37 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.10 1.49 8.08 -2.39 -0.02 1.48 16 40 H 0.09 1.72 7.96 -2.39 -0.02 1.70 16 41 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -58.90 323.15 2.75 -56.15 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.42 Total: 21.17 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: 4.48 Total: -31.18 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -2.74 Total: -79.34 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -1.44 Total: -12.66 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -58.90 2.75 -56.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602692715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.920 kcal (2) G-P(sol) polarization free energy of solvation -58.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds