Wall clock time and date at job start Sun Mar 29 2020 22:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46905 * 110.99701 * 2 1 4 4 C 1.53003 * 109.46963 * 194.35297 * 3 2 1 5 5 C 1.53001 * 109.47294 * 273.55436 * 4 3 2 6 6 C 1.53008 * 109.46689 * 33.55332 * 4 3 2 7 7 C 1.52998 * 109.47045 * 153.55297 * 4 3 2 8 8 O 1.42897 * 109.46927 * 180.02562 * 7 4 3 9 9 C 1.46900 * 110.99783 * 123.95311 * 2 1 3 10 10 C 1.52998 * 109.47144 * 46.05510 * 9 2 1 11 11 C 1.50700 * 115.55396 * 59.05045 * 10 9 2 12 12 H 1.07996 * 120.00184 * 246.13550 * 11 10 9 13 13 C 1.37877 * 119.99865 * 65.85396 * 11 10 9 14 14 N 1.31519 * 119.99757 * 6.73421 * 13 11 10 15 15 Si 1.86798 * 120.00282 * 186.73372 * 13 11 10 16 16 H 1.48501 * 109.47177 * 59.99824 * 15 13 11 17 17 H 1.48499 * 109.47501 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46825 * 300.00131 * 15 13 11 19 19 C 1.52996 * 117.49792 * 204.72637 * 10 9 2 20 20 C 1.53007 * 117.49697 * 273.38519 * 10 9 2 21 21 H 1.08996 * 109.47045 * 299.48775 * 1 2 3 22 22 H 1.09001 * 109.47016 * 59.48589 * 1 2 3 23 23 H 1.09004 * 109.47047 * 179.48445 * 1 2 3 24 24 H 1.08996 * 109.46961 * 314.35701 * 3 2 1 25 25 H 1.09005 * 109.46937 * 74.35958 * 3 2 1 26 26 H 1.09001 * 109.46928 * 51.38715 * 5 4 3 27 27 H 1.08994 * 109.47310 * 171.38737 * 5 4 3 28 28 H 1.08999 * 109.47235 * 291.39305 * 5 4 3 29 29 H 1.08999 * 109.46868 * 65.66824 * 6 4 3 30 30 H 1.08998 * 109.46443 * 185.66578 * 6 4 3 31 31 H 1.08998 * 109.46954 * 305.66727 * 6 4 3 32 32 H 1.08997 * 109.47014 * 300.00145 * 7 4 3 33 33 H 1.08998 * 109.47221 * 60.00148 * 7 4 3 34 34 H 0.96698 * 113.99943 * 179.97438 * 8 7 4 35 35 H 1.08992 * 109.47393 * 286.04726 * 9 2 1 36 36 H 1.09004 * 109.46948 * 166.04781 * 9 2 1 37 37 H 0.97002 * 119.99550 * 184.98202 * 14 13 11 38 38 H 1.09007 * 117.49573 * 215.00211 * 19 10 9 39 39 H 1.08997 * 117.50014 * 0.02562 * 19 10 9 40 40 H 1.09000 * 117.49729 * 359.97162 * 20 10 9 41 41 H 1.08995 * 117.49867 * 144.97527 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4829 1.3469 -0.3576 5 6 4.3087 1.1217 0.9106 6 6 3.7503 0.2121 -1.3486 7 6 3.8769 2.6820 -0.9925 8 8 5.2660 2.6587 -1.3270 9 6 1.9954 -0.7660 1.1376 10 6 1.2436 -2.0938 1.2500 11 6 1.3207 -2.9889 0.0402 12 1 0.4311 -3.1958 -0.5361 13 6 2.5282 -3.5392 -0.3344 14 7 3.5846 -3.3927 0.4353 15 14 2.6638 -4.4928 -1.9349 16 1 2.3057 -3.6062 -3.0712 17 1 4.0566 -4.9785 -2.1053 18 1 1.7365 -5.6521 -1.9003 19 6 1.1976 -2.7654 2.6239 20 6 -0.0586 -2.1024 2.0533 21 1 -0.3633 0.5058 0.8945 22 1 -0.3633 0.5218 -0.8854 23 1 -0.3633 -1.0277 -0.0092 24 1 1.4549 1.9681 -0.7348 25 1 1.8669 1.8100 0.9897 26 1 3.9252 0.2520 1.4442 27 1 5.3508 0.9516 0.6402 28 1 4.2383 2.0010 1.5509 29 1 3.2416 0.4237 -2.2891 30 1 4.8227 0.1300 -1.5259 31 1 3.3773 -0.7255 -0.9366 32 1 3.2886 2.8423 -1.8959 33 1 3.6863 3.4903 -0.2865 34 1 5.5860 3.4748 -1.7351 35 1 1.8604 -0.1931 2.0550 36 1 3.0568 -0.9613 0.9841 37 1 4.4494 -3.7166 0.1386 38 1 1.2232 -3.8547 2.6527 39 1 1.7025 -2.2611 3.4478 40 1 -0.3794 -1.1623 2.5020 41 1 -0.8595 -2.7553 1.7064 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602837641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:32 Heat of formation + Delta-G solvation = -17.874895 kcal Electronic energy + Delta-G solvation = -19156.798981 eV Core-core repulsion = 16458.917041 eV Total energy + Delta-G solvation = -2697.881939 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.81606 -37.06831 -35.32508 -32.94909 -31.84801 -27.37558 -26.45779 -26.20697 -25.68846 -24.95444 -21.42317 -21.03628 -18.88159 -18.34476 -17.16230 -16.09854 -15.12344 -14.77615 -14.45842 -14.14297 -14.05684 -13.59567 -13.18395 -12.69547 -12.42542 -12.34901 -12.08024 -11.58174 -11.37646 -11.09259 -10.97140 -10.81244 -10.69754 -10.50293 -10.37621 -10.31636 -10.18257 -9.96208 -9.74540 -9.70475 -9.17680 -8.89290 -8.30249 -7.96005 -7.28512 -5.91249 -3.92364 3.40532 3.45616 3.49521 4.34066 4.53269 4.89842 5.22791 5.28534 5.39471 5.44878 5.52193 5.69430 5.79265 5.96522 5.98646 6.05175 6.17038 6.21945 6.27962 6.38742 6.45865 6.58346 6.62607 6.65227 6.69649 6.73260 6.82448 6.92351 6.95660 7.05952 7.19435 7.45074 7.51602 7.66553 7.80318 7.99687 8.05882 8.14690 8.55297 9.02596 9.70160 11.18247 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019988 B = 0.009729 C = 0.007828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.490277 B = 2877.341903 C = 3576.239750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.511 5.511 3 C 0.064 3.936 4 C -0.056 4.056 5 C -0.148 4.148 6 C -0.127 4.127 7 C 0.088 3.912 8 O -0.565 6.565 9 C 0.093 3.907 10 C 0.057 3.943 11 C -0.472 4.472 12 H 0.055 0.945 13 C 0.078 3.922 14 N -0.880 5.880 15 Si 0.882 3.118 16 H -0.275 1.275 17 H -0.289 1.289 18 H -0.281 1.281 19 C -0.176 4.176 20 C -0.217 4.217 21 H 0.004 0.996 22 H 0.045 0.955 23 H 0.091 0.909 24 H 0.061 0.939 25 H 0.024 0.976 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.100 0.900 32 H 0.041 0.959 33 H 0.036 0.964 34 H 0.369 0.631 35 H -0.006 1.006 36 H 0.105 0.895 37 H 0.259 0.741 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.708 10.882 -1.057 10.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.233 5.233 3 C -0.064 4.064 4 C -0.057 4.057 5 C -0.205 4.205 6 C -0.185 4.185 7 C 0.010 3.990 8 O -0.369 6.369 9 C -0.033 4.033 10 C 0.057 3.943 11 C -0.510 4.510 12 H 0.073 0.927 13 C -0.124 4.124 14 N -0.517 5.517 15 Si 0.710 3.290 16 H -0.201 1.201 17 H -0.215 1.215 18 H -0.207 1.207 19 C -0.214 4.214 20 C -0.254 4.254 21 H 0.023 0.977 22 H 0.064 0.936 23 H 0.109 0.891 24 H 0.080 0.920 25 H 0.042 0.958 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.118 0.882 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.215 0.785 35 H 0.012 0.988 36 H 0.123 0.877 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.415 9.936 -1.190 10.016 hybrid contribution -0.154 0.644 -0.288 0.722 sum -0.569 10.580 -1.479 10.698 Atomic orbital electron populations 1.22429 0.88542 1.03346 0.97564 1.61938 1.06782 1.10067 1.44557 1.22072 0.94323 0.91395 0.98655 1.20509 0.94272 0.94291 0.96612 1.22128 1.00342 1.01608 0.96429 1.21726 0.99517 1.00018 0.97206 1.22292 0.81765 0.97446 0.97460 1.86553 1.25220 1.41590 1.83549 1.21995 1.01942 0.92173 0.87212 1.18893 0.91416 0.93127 0.90901 1.20205 0.94424 1.26799 1.09565 0.92660 1.24796 0.96067 0.95561 0.96013 1.69961 0.99540 1.47096 1.35147 0.86834 0.76816 0.80247 0.85135 1.20068 1.21508 1.20696 1.22749 1.00281 0.99074 0.99302 1.23020 0.92956 1.00649 1.08746 0.97703 0.93608 0.89090 0.92013 0.95829 0.90599 0.92466 0.94308 0.94266 0.94192 0.88158 0.94088 0.94593 0.78523 0.98809 0.87739 0.93128 0.90227 0.92196 0.92042 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 8.37 60.07 0.50 1.05 16 2 N -0.51 -10.28 3.25 -242.91 -0.79 -11.07 16 3 C 0.06 1.10 4.53 -3.82 -0.02 1.08 16 4 C -0.06 -0.96 0.60 -154.50 -0.09 -1.05 16 5 C -0.15 -2.61 7.88 37.16 0.29 -2.31 16 6 C -0.13 -2.53 7.72 37.16 0.29 -2.24 16 7 C 0.09 1.23 5.76 37.16 0.21 1.44 16 8 O -0.57 -7.85 12.58 -35.23 -0.44 -8.30 16 9 C 0.09 2.08 3.12 -3.82 -0.01 2.07 16 10 C 0.06 1.37 0.54 -155.66 -0.08 1.28 16 11 C -0.47 -12.46 7.94 -34.44 -0.27 -12.73 16 12 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 13 C 0.08 2.09 5.39 -17.82 -0.10 2.00 16 14 N -0.88 -24.25 12.48 55.43 0.69 -23.55 16 15 Si 0.88 21.26 29.55 -169.99 -5.02 16.24 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C -0.18 -4.07 9.95 -26.69 -0.27 -4.34 16 20 C -0.22 -4.63 7.90 -26.69 -0.21 -4.84 16 21 H 0.00 0.08 7.88 -51.93 -0.41 -0.33 16 22 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 23 H 0.09 1.87 5.18 -51.93 -0.27 1.60 16 24 H 0.06 0.95 7.70 -51.93 -0.40 0.55 16 25 H 0.02 0.40 7.67 -51.93 -0.40 0.00 16 26 H 0.08 1.49 4.50 -51.93 -0.23 1.26 16 27 H 0.06 1.03 7.91 -51.93 -0.41 0.62 16 28 H 0.04 0.60 8.13 -51.93 -0.42 0.18 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.79 7.83 -51.93 -0.41 0.39 16 31 H 0.10 2.35 5.51 -51.93 -0.29 2.06 16 32 H 0.04 0.53 8.11 -51.93 -0.42 0.11 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.37 3.19 9.12 45.56 0.42 3.61 16 35 H -0.01 -0.13 7.86 -51.93 -0.41 -0.54 16 36 H 0.10 2.55 3.88 -51.93 -0.20 2.35 16 37 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 38 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 1.22 7.81 -51.93 -0.41 0.81 16 41 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 312.90 15.07 4.72 4.72 Total: -1.00 -28.19 312.90 -6.94 -35.14 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.34 Total: 5.42 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 0.24 Total: -18.59 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.10 Total: -34.62 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.44 Total: -8.30 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.19 -6.94 -35.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602837641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.260 kcal (2) G-P(sol) polarization free energy of solvation -28.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds