Wall clock time and date at job start Sun Mar 29 2020 22:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46905 * 110.99701 * 2 1 4 4 C 1.53003 * 109.46963 * 194.35297 * 3 2 1 5 5 C 1.53001 * 109.47294 * 273.55436 * 4 3 2 6 6 C 1.53008 * 109.46689 * 33.55332 * 4 3 2 7 7 C 1.52998 * 109.47045 * 153.55297 * 4 3 2 8 8 O 1.42897 * 109.46927 * 180.02562 * 7 4 3 9 9 C 1.46900 * 110.99783 * 123.95311 * 2 1 3 10 10 C 1.52998 * 109.47144 * 46.05510 * 9 2 1 11 11 C 1.50700 * 115.55396 * 59.05045 * 10 9 2 12 12 H 1.07996 * 120.00184 * 246.13550 * 11 10 9 13 13 C 1.37877 * 119.99865 * 65.85396 * 11 10 9 14 14 N 1.31519 * 119.99757 * 6.73421 * 13 11 10 15 15 Si 1.86798 * 120.00282 * 186.73372 * 13 11 10 16 16 H 1.48501 * 109.47177 * 59.99824 * 15 13 11 17 17 H 1.48499 * 109.47501 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46825 * 300.00131 * 15 13 11 19 19 C 1.52996 * 117.49792 * 204.72637 * 10 9 2 20 20 C 1.53007 * 117.49697 * 273.38519 * 10 9 2 21 21 H 1.08996 * 109.47045 * 299.48775 * 1 2 3 22 22 H 1.09001 * 109.47016 * 59.48589 * 1 2 3 23 23 H 1.09004 * 109.47047 * 179.48445 * 1 2 3 24 24 H 1.08996 * 109.46961 * 314.35701 * 3 2 1 25 25 H 1.09005 * 109.46937 * 74.35958 * 3 2 1 26 26 H 1.09001 * 109.46928 * 51.38715 * 5 4 3 27 27 H 1.08994 * 109.47310 * 171.38737 * 5 4 3 28 28 H 1.08999 * 109.47235 * 291.39305 * 5 4 3 29 29 H 1.08999 * 109.46868 * 65.66824 * 6 4 3 30 30 H 1.08998 * 109.46443 * 185.66578 * 6 4 3 31 31 H 1.08998 * 109.46954 * 305.66727 * 6 4 3 32 32 H 1.08997 * 109.47014 * 300.00145 * 7 4 3 33 33 H 1.08998 * 109.47221 * 60.00148 * 7 4 3 34 34 H 0.96698 * 113.99943 * 179.97438 * 8 7 4 35 35 H 1.08992 * 109.47393 * 286.04726 * 9 2 1 36 36 H 1.09004 * 109.46948 * 166.04781 * 9 2 1 37 37 H 0.97002 * 119.99550 * 184.98202 * 14 13 11 38 38 H 1.09007 * 117.49573 * 215.00211 * 19 10 9 39 39 H 1.08997 * 117.50014 * 0.02562 * 19 10 9 40 40 H 1.09000 * 117.49729 * 359.97162 * 20 10 9 41 41 H 1.08995 * 117.49867 * 144.97527 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4829 1.3469 -0.3576 5 6 4.3087 1.1217 0.9106 6 6 3.7503 0.2121 -1.3486 7 6 3.8769 2.6820 -0.9925 8 8 5.2660 2.6587 -1.3270 9 6 1.9954 -0.7660 1.1376 10 6 1.2436 -2.0938 1.2500 11 6 1.3207 -2.9889 0.0402 12 1 0.4311 -3.1958 -0.5361 13 6 2.5282 -3.5392 -0.3344 14 7 3.5846 -3.3927 0.4353 15 14 2.6638 -4.4928 -1.9349 16 1 2.3057 -3.6062 -3.0712 17 1 4.0566 -4.9785 -2.1053 18 1 1.7365 -5.6521 -1.9003 19 6 1.1976 -2.7654 2.6239 20 6 -0.0586 -2.1024 2.0533 21 1 -0.3633 0.5058 0.8945 22 1 -0.3633 0.5218 -0.8854 23 1 -0.3633 -1.0277 -0.0092 24 1 1.4549 1.9681 -0.7348 25 1 1.8669 1.8100 0.9897 26 1 3.9252 0.2520 1.4442 27 1 5.3508 0.9516 0.6402 28 1 4.2383 2.0010 1.5509 29 1 3.2416 0.4237 -2.2891 30 1 4.8227 0.1300 -1.5259 31 1 3.3773 -0.7255 -0.9366 32 1 3.2886 2.8423 -1.8959 33 1 3.6863 3.4903 -0.2865 34 1 5.5860 3.4748 -1.7351 35 1 1.8604 -0.1931 2.0550 36 1 3.0568 -0.9613 0.9841 37 1 4.4494 -3.7166 0.1386 38 1 1.2232 -3.8547 2.6527 39 1 1.7025 -2.2611 3.4478 40 1 -0.3794 -1.1623 2.5020 41 1 -0.8595 -2.7553 1.7064 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602837641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:32 Heat of formation + Delta-G solvation = -36.048462 kcal Electronic energy + Delta-G solvation = -19157.587046 eV Core-core repulsion = 16458.917041 eV Total energy + Delta-G solvation = -2698.670004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.28144 -38.52202 -36.72536 -34.40971 -33.85491 -28.92239 -27.99992 -27.66190 -27.40685 -26.46987 -23.02938 -22.74834 -20.75248 -19.68880 -18.25366 -17.95442 -16.70198 -16.34941 -16.11097 -15.68784 -15.51898 -15.14359 -14.67830 -14.31106 -13.98358 -13.74479 -13.46323 -13.32498 -13.08745 -12.75960 -12.68017 -12.55935 -12.39616 -12.24362 -12.07632 -11.95207 -11.69081 -11.37518 -11.31357 -10.94474 -10.82857 -10.76311 -10.21170 -9.82769 -8.79848 -7.97064 -6.01232 1.45042 1.48326 1.53236 2.52664 3.11159 3.32174 3.54315 3.72783 3.98843 4.11849 4.22450 4.34610 4.49861 4.58848 4.62103 4.65863 4.66695 4.69685 4.76593 4.81511 4.92792 4.96021 5.00123 5.01161 5.16765 5.20668 5.24867 5.29803 5.38743 5.48300 5.53379 5.62700 5.75403 5.90780 6.02797 6.41203 6.62485 6.63724 6.98084 7.04224 7.62624 9.11038 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019988 B = 0.009729 C = 0.007828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.490277 B = 2877.341903 C = 3576.239750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.528 5.528 3 C 0.066 3.934 4 C -0.058 4.058 5 C -0.142 4.142 6 C -0.117 4.117 7 C 0.095 3.905 8 O -0.587 6.587 9 C 0.110 3.890 10 C 0.036 3.964 11 C -0.477 4.477 12 H 0.046 0.954 13 C 0.041 3.959 14 N -0.901 5.901 15 Si 0.928 3.072 16 H -0.275 1.275 17 H -0.291 1.291 18 H -0.278 1.278 19 C -0.187 4.187 20 C -0.187 4.187 21 H 0.017 0.983 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.033 0.967 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.041 0.959 30 H 0.027 0.973 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.393 0.607 35 H -0.005 1.005 36 H 0.080 0.920 37 H 0.255 0.745 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.564 12.960 -1.487 13.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.252 5.252 3 C -0.062 4.062 4 C -0.058 4.058 5 C -0.199 4.199 6 C -0.174 4.174 7 C 0.017 3.983 8 O -0.395 6.395 9 C -0.017 4.017 10 C 0.035 3.965 11 C -0.515 4.515 12 H 0.064 0.936 13 C -0.159 4.159 14 N -0.540 5.540 15 Si 0.755 3.245 16 H -0.200 1.200 17 H -0.217 1.217 18 H -0.204 1.204 19 C -0.225 4.225 20 C -0.224 4.224 21 H 0.036 0.964 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.104 0.896 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.242 0.758 35 H 0.013 0.987 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.280 12.030 -1.632 12.207 hybrid contribution 0.111 -0.002 -0.161 0.195 sum -1.169 12.028 -1.793 12.217 Atomic orbital electron populations 1.22374 0.87598 1.02364 0.99206 1.61852 1.07756 1.11874 1.43680 1.22122 0.94244 0.89924 0.99889 1.20522 0.94470 0.95199 0.95621 1.22036 0.99498 1.01366 0.96991 1.21550 0.98396 0.99588 0.97897 1.22171 0.82035 0.95719 0.98406 1.86496 1.25266 1.43725 1.84011 1.21667 1.00362 0.91653 0.88031 1.18979 0.93652 0.93752 0.90123 1.20398 0.93922 1.26866 1.10298 0.93627 1.25300 0.96052 0.96473 0.98105 1.70057 0.99580 1.48203 1.36142 0.86097 0.76507 0.79269 0.82586 1.20034 1.21714 1.20376 1.22701 1.02220 0.98105 0.99509 1.22975 0.91831 1.01050 1.06552 0.96415 0.91476 0.91418 0.89596 0.94916 0.93205 0.93741 0.92160 0.93992 0.95392 0.91962 0.92708 0.92179 0.75801 0.98661 0.90236 0.93630 0.92153 0.91435 0.89848 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.14 8.37 127.69 1.07 2.21 16 2 N -0.53 -20.53 3.25 -922.43 -3.00 -23.53 16 3 C 0.07 2.09 4.53 86.30 0.39 2.48 16 4 C -0.06 -1.86 0.60 -52.18 -0.03 -1.89 16 5 C -0.14 -4.88 7.88 71.98 0.57 -4.31 16 6 C -0.12 -4.61 7.72 71.98 0.56 -4.05 16 7 C 0.09 2.32 5.76 71.98 0.41 2.73 16 8 O -0.59 -14.83 12.58 -148.98 -1.87 -16.71 16 9 C 0.11 4.87 3.12 86.30 0.27 5.14 16 10 C 0.04 1.69 0.54 -52.93 -0.03 1.66 16 11 C -0.48 -25.40 7.94 25.60 0.20 -25.20 16 12 H 0.05 2.46 7.81 -2.91 -0.02 2.44 16 13 C 0.04 2.21 5.39 84.65 0.46 2.67 16 14 N -0.90 -50.95 12.48 21.45 0.27 -50.68 16 15 Si 0.93 44.23 29.55 68.60 2.03 46.26 16 16 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 17 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 C -0.19 -8.68 9.95 30.62 0.30 -8.38 16 20 C -0.19 -7.75 7.90 30.62 0.24 -7.51 16 21 H 0.02 0.56 7.88 -2.39 -0.02 0.54 16 22 H 0.07 2.03 8.09 -2.39 -0.02 2.01 16 23 H 0.07 2.68 5.18 -2.38 -0.01 2.67 16 24 H 0.09 2.29 7.70 -2.39 -0.02 2.28 16 25 H 0.03 0.99 7.67 -2.38 -0.02 0.97 16 26 H 0.05 1.97 4.50 -2.39 -0.01 1.96 16 27 H 0.04 1.60 7.91 -2.39 -0.02 1.58 16 28 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 29 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.03 1.11 7.83 -2.39 -0.02 1.10 16 31 H 0.06 2.96 5.51 -2.39 -0.01 2.95 16 32 H 0.05 1.20 8.11 -2.39 -0.02 1.18 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.39 5.60 9.12 -74.06 -0.68 4.93 16 35 H 0.00 -0.19 7.86 -2.39 -0.02 -0.21 16 36 H 0.08 3.97 3.88 -2.39 -0.01 3.96 16 37 H 0.25 14.11 8.32 -92.71 -0.77 13.34 16 38 H 0.06 2.99 8.14 -2.38 -0.02 2.97 16 39 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 40 H 0.08 3.08 7.81 -2.39 -0.02 3.07 16 41 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -60.71 312.90 2.15 -58.56 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.32 Total: 20.55 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 4.41 Total: -34.45 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -2.73 Total: -74.21 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -1.87 Total: -16.71 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -60.71 2.15 -58.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602837641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.511 kcal (2) G-P(sol) polarization free energy of solvation -60.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds