Wall clock time and date at job start Sun Mar 29 2020 22:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47543 * 2 1 4 4 C 1.53003 * 109.47050 * 239.99379 * 2 1 3 5 5 O 1.42907 * 109.47109 * 119.99734 * 2 1 3 6 6 C 1.42904 * 113.99920 * 59.99605 * 5 2 1 7 7 C 1.52999 * 109.46825 * 180.02562 * 6 5 2 8 8 C 1.53006 * 109.46800 * 180.02562 * 7 6 5 9 9 N 1.46499 * 109.47000 * 180.02562 * 8 7 6 10 10 C 1.36937 * 120.00204 * 269.99959 * 9 8 7 11 11 H 1.08003 * 119.99955 * 141.41279 * 10 9 8 12 12 C 1.38811 * 119.99840 * 321.42610 * 10 9 8 13 13 N 1.31619 * 119.99914 * 157.77450 * 12 10 9 14 14 Si 1.86797 * 119.99823 * 337.77040 * 12 10 9 15 15 H 1.48494 * 109.47472 * 95.68500 * 14 12 10 16 16 H 1.48510 * 109.47018 * 215.68668 * 14 12 10 17 17 H 1.48501 * 109.46998 * 335.67978 * 14 12 10 18 18 C 1.46505 * 119.99913 * 89.99908 * 9 8 7 19 19 C 1.53006 * 117.49670 * 183.19169 * 18 9 8 20 20 C 1.52998 * 117.49913 * 114.53382 * 18 9 8 21 21 H 1.08998 * 109.46679 * 300.00610 * 1 2 3 22 22 H 1.09003 * 109.46873 * 60.00257 * 1 2 3 23 23 H 1.08999 * 109.47198 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47419 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.46323 * 299.99877 * 3 2 1 26 26 H 1.08998 * 109.47459 * 59.99206 * 3 2 1 27 27 H 1.08999 * 109.47293 * 300.00154 * 4 2 1 28 28 H 1.08997 * 109.46629 * 60.00220 * 4 2 1 29 29 H 1.08996 * 109.46788 * 180.02562 * 4 2 1 30 30 H 1.08998 * 109.47071 * 60.00233 * 6 5 2 31 31 H 1.09000 * 109.46794 * 300.00163 * 6 5 2 32 32 H 1.08998 * 109.47166 * 60.00217 * 7 6 5 33 33 H 1.08994 * 109.47211 * 299.99988 * 7 6 5 34 34 H 1.08998 * 109.47165 * 60.00117 * 8 7 6 35 35 H 1.09000 * 109.46725 * 300.00033 * 8 7 6 36 36 H 0.96999 * 119.99752 * 179.97438 * 13 12 10 37 37 H 1.09001 * 115.55232 * 328.85904 * 18 9 8 38 38 H 1.08993 * 117.49982 * 0.02562 * 19 18 9 39 39 H 1.09000 * 117.49376 * 145.01943 * 19 18 9 40 40 H 1.09001 * 117.50045 * 214.98064 * 20 18 9 41 41 H 1.09006 * 117.49626 * 359.97234 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0064 -0.6736 1.1669 6 6 1.5846 -2.0355 1.2647 7 6 2.1495 -2.6535 2.5452 8 6 1.6984 -4.1119 2.6496 9 7 2.2388 -4.7035 3.8761 10 6 3.4603 -5.3221 3.8574 11 1 4.1353 -5.2098 4.6930 12 6 3.8311 -6.0932 2.7644 13 7 5.1044 -6.3229 2.5226 14 14 2.5230 -6.8050 1.6367 15 1 2.3320 -5.9057 0.4706 16 1 2.9536 -8.1451 1.1631 17 1 1.2436 -6.9304 2.3801 18 6 1.4722 -4.6333 5.1226 19 6 2.1225 -5.2033 6.3849 20 6 0.9658 -5.9497 5.7156 21 1 -0.3632 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1301 1.4424 -0.0005 25 1 1.6768 1.9562 -0.8901 26 1 1.6768 1.9564 0.8899 27 1 1.6767 -1.7491 -1.2491 28 1 1.6767 -0.2076 -2.1391 29 1 3.1300 -0.7218 -1.2489 30 1 1.9491 -2.5916 0.4010 31 1 0.4958 -2.0776 1.2909 32 1 1.7847 -2.0973 3.4087 33 1 3.2383 -2.6113 2.5194 34 1 2.0636 -4.6678 1.7861 35 1 0.6096 -4.1544 2.6752 36 1 5.3634 -6.8621 1.7590 37 1 0.8388 -3.7535 5.2362 38 1 3.1208 -5.6300 6.2880 39 1 1.9166 -4.6986 7.3288 40 1 -0.0007 -5.9359 6.2195 41 1 1.2026 -6.8679 5.1780 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610681400.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:23 Heat of formation + Delta-G solvation = -10.081615 kcal Electronic energy + Delta-G solvation = -18098.876839 eV Core-core repulsion = 15401.332842 eV Total energy + Delta-G solvation = -2697.543997 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.90767 -37.28210 -34.47779 -33.22750 -31.79893 -29.81002 -27.51784 -27.41909 -25.12724 -23.61921 -21.59329 -20.95747 -19.87942 -19.56188 -16.65464 -16.07242 -15.73057 -15.44323 -15.11327 -14.65052 -14.17157 -13.69494 -13.37362 -12.91371 -12.67162 -12.40350 -12.34143 -12.03375 -11.98742 -11.80147 -11.76874 -11.48750 -11.07370 -10.86757 -10.79329 -10.64261 -10.32374 -10.19241 -9.92672 -9.70144 -9.43797 -9.38793 -9.21575 -8.50967 -6.71613 -6.02153 -3.44353 3.27338 3.44219 3.51079 3.83855 4.49528 4.78276 4.83239 4.83928 4.92526 5.03396 5.28480 5.45030 5.46326 5.50053 5.62992 5.69072 5.70281 5.78557 5.81454 5.82161 5.90941 5.98793 6.02610 6.04254 6.13261 6.23795 6.26553 6.38094 6.40357 6.44571 6.53468 6.85241 6.94375 7.06500 7.13611 7.56200 8.04856 8.39804 8.97962 9.68865 10.09615 11.12799 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023121 B = 0.006483 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.711330 B = 4317.670648 C = 4908.073681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.104 3.896 3 C -0.136 4.136 4 C -0.179 4.179 5 O -0.376 6.376 6 C 0.059 3.941 7 C -0.131 4.131 8 C 0.145 3.855 9 N -0.572 5.572 10 C -0.268 4.268 11 H 0.083 0.917 12 C 0.039 3.961 13 N -0.896 5.896 14 Si 0.873 3.127 15 H -0.286 1.286 16 H -0.301 1.301 17 H -0.266 1.266 18 C 0.120 3.880 19 C -0.188 4.188 20 C -0.224 4.224 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.264 0.736 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.577 10.910 -4.468 15.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.064 3.936 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.295 6.295 6 C -0.018 4.018 7 C -0.171 4.171 8 C 0.019 3.981 9 N -0.291 5.291 10 C -0.396 4.396 11 H 0.100 0.900 12 C -0.162 4.162 13 N -0.537 5.537 14 Si 0.703 3.297 15 H -0.214 1.214 16 H -0.229 1.229 17 H -0.191 1.191 18 C 0.011 3.989 19 C -0.226 4.226 20 C -0.265 4.265 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.303 10.911 -4.454 15.015 hybrid contribution -0.796 -0.746 -0.933 1.435 sum -10.099 10.165 -5.387 15.308 Atomic orbital electron populations 1.22424 0.96155 1.02550 1.02355 1.21443 0.92879 0.93168 0.86096 1.21737 1.02000 0.93571 1.02006 1.22435 1.02411 1.01173 0.97658 1.87997 1.74554 1.24731 1.42253 1.22616 0.97818 0.81975 0.99379 1.22118 1.02900 0.97230 0.94809 1.21034 0.95735 0.91255 0.90034 1.43636 1.19015 1.62767 1.03685 1.18732 0.90256 1.24433 1.06215 0.89985 1.25492 0.95491 0.97081 0.98138 1.69866 1.14929 1.39906 1.28953 0.86975 0.83881 0.78191 0.80647 1.21358 1.22866 1.19085 1.21163 0.97090 0.93622 0.86991 1.23061 0.98880 1.05181 0.95472 1.23385 0.96623 1.00036 1.06475 0.91851 0.91913 0.92105 0.91817 0.91558 0.91961 0.92058 0.91929 0.91618 0.93479 0.93831 0.92121 0.90491 0.92748 0.94111 0.92652 0.89093 0.87896 0.90485 0.90855 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 8.25 37.16 0.31 -1.65 16 2 C 0.10 1.33 1.14 -90.62 -0.10 1.23 16 3 C -0.14 -1.47 8.84 37.16 0.33 -1.14 16 4 C -0.18 -2.17 8.25 37.16 0.31 -1.86 16 5 O -0.38 -6.21 9.99 -35.23 -0.35 -6.57 16 6 C 0.06 0.99 5.14 37.16 0.19 1.18 16 7 C -0.13 -2.56 5.91 -26.73 -0.16 -2.72 16 8 C 0.15 3.13 4.55 -4.04 -0.02 3.11 16 9 N -0.57 -13.62 2.39 -165.65 -0.40 -14.02 16 10 C -0.27 -7.40 8.95 -15.06 -0.13 -7.54 16 11 H 0.08 2.45 6.86 -52.48 -0.36 2.09 16 12 C 0.04 1.12 5.30 -17.43 -0.09 1.02 16 13 N -0.90 -27.19 13.97 55.49 0.78 -26.41 16 14 Si 0.87 22.09 25.08 -169.99 -4.26 17.83 16 15 H -0.29 -6.96 6.69 56.52 0.38 -6.59 16 16 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.12 2.47 6.56 -67.93 -0.45 2.02 16 19 C -0.19 -3.65 9.80 -26.69 -0.26 -3.92 16 20 C -0.22 -4.36 10.36 -26.69 -0.28 -4.63 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.06 0.69 6.54 -51.93 -0.34 0.35 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.78 6.54 -51.93 -0.34 0.44 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.81 6.42 -51.93 -0.33 0.47 16 31 H 0.04 0.66 6.42 -51.93 -0.33 0.32 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 34 H 0.05 1.28 3.40 -51.93 -0.18 1.10 16 35 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.10 2.26 6.44 -51.93 -0.33 1.92 16 39 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 LS Contribution 320.23 15.07 4.83 4.83 Total: -1.00 -29.94 320.23 -7.06 -36.99 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -7.29 Total: 2.24 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -0.36 Total: -14.89 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.38 Total: -40.43 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.35 Total: -6.57 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.26 Total: 17.83 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.94 -7.06 -36.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610681400.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.913 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds