Wall clock time and date at job start Sun Mar 29 2020 23:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46608 * 2 1 4 4 H 1.08998 * 109.47510 * 306.20770 * 3 2 1 5 5 C 1.50706 * 109.46929 * 186.21022 * 3 2 1 6 6 H 1.07999 * 120.00229 * 245.14629 * 5 3 2 7 7 C 1.37881 * 119.99489 * 65.14547 * 5 3 2 8 8 N 1.31508 * 120.00491 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99657 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47116 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47043 * 119.99698 * 9 7 5 12 12 H 1.48497 * 109.47308 * 239.99962 * 9 7 5 13 13 N 1.46903 * 109.47311 * 66.21557 * 3 2 1 14 14 C 1.46849 * 110.99667 * 209.06685 * 13 3 2 15 15 C 1.53035 * 109.51966 * 174.15931 * 14 13 3 16 16 C 1.53121 * 109.28178 * 59.17858 * 15 14 13 17 17 C 1.53114 * 109.15942 * 302.34558 * 16 15 14 18 18 H 1.09003 * 109.50544 * 297.71251 * 17 16 15 19 19 C 1.53002 * 109.50634 * 177.59276 * 17 16 15 20 20 C 1.46848 * 111.00273 * 84.85653 * 13 3 2 21 21 H 1.08997 * 109.46413 * 65.82210 * 20 13 3 22 22 C 1.53003 * 109.45747 * 305.85491 * 20 13 3 23 23 O 1.42897 * 109.47012 * 76.17535 * 22 20 13 24 24 H 1.08999 * 109.47020 * 184.75775 * 1 2 3 25 25 H 1.08990 * 109.47664 * 304.76486 * 1 2 3 26 26 H 1.09007 * 109.47011 * 64.76633 * 1 2 3 27 27 H 1.08996 * 109.47396 * 239.99947 * 2 1 3 28 28 H 1.09001 * 109.46734 * 119.99333 * 2 1 3 29 29 H 0.97003 * 120.00389 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.46397 * 294.17147 * 14 13 3 31 31 H 1.08992 * 109.46680 * 54.14306 * 14 13 3 32 32 H 1.09005 * 109.50257 * 179.12041 * 15 14 13 33 33 H 1.08999 * 109.50525 * 299.19372 * 15 14 13 34 34 H 1.08998 * 109.52188 * 62.24958 * 16 15 14 35 35 H 1.08996 * 109.52536 * 182.37828 * 16 15 14 36 36 H 1.08999 * 109.46641 * 300.20184 * 19 17 16 37 37 H 1.09004 * 109.46393 * 60.19737 * 19 17 16 38 38 H 1.08993 * 109.47435 * 180.19331 * 19 17 16 39 39 H 1.09004 * 109.46523 * 196.17136 * 22 20 13 40 40 H 1.08996 * 109.47271 * 316.17199 * 22 20 13 41 41 H 0.96711 * 113.99887 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5887 1.9874 -0.8292 5 6 3.5391 1.4454 -0.1537 6 1 4.1636 1.8087 0.6491 7 6 4.1134 0.9842 -1.3193 8 7 3.3530 0.5413 -2.2966 9 14 5.9716 0.9884 -1.5101 10 1 6.5947 1.5315 -0.2765 11 1 6.4492 -0.3996 -1.7355 12 1 6.3482 1.8359 -2.6699 13 7 1.6764 2.0904 1.2674 14 6 1.5000 3.5371 1.0872 15 6 0.9824 4.1550 2.3880 16 6 1.9849 3.8804 3.5123 17 6 2.1873 2.3686 3.6469 18 1 1.2433 1.8981 3.9217 19 6 3.2329 2.0874 4.7279 20 6 2.6701 1.8024 2.3096 21 1 3.6209 2.2632 2.0421 22 6 2.8544 0.2886 2.4337 23 8 3.6467 -0.1857 1.3431 24 1 -0.3633 -1.0241 0.0852 25 1 -0.3634 0.5859 0.8441 26 1 -0.3633 0.4381 -0.9297 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.7571 0.2172 -3.1168 30 1 2.4564 3.9898 0.8254 31 1 0.7816 3.7186 0.2878 32 1 0.8663 5.2311 2.2587 33 1 0.0190 3.7132 2.6427 34 1 2.9368 4.3557 3.2756 35 1 1.6003 4.2822 4.4496 36 1 4.1759 2.5599 4.4528 37 1 2.8885 2.4909 5.6801 38 1 3.3791 1.0113 4.8209 39 1 3.3561 0.0596 3.3739 40 1 1.8798 -0.1990 2.4137 41 1 3.8048 -1.1397 1.3575 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688664055.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:59 Heat of formation + Delta-G solvation = -26.038454 kcal Electronic energy + Delta-G solvation = -19824.129665 eV Core-core repulsion = 17125.893727 eV Total energy + Delta-G solvation = -2698.235938 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.28168 -35.79408 -34.44278 -32.19710 -31.51696 -30.60562 -26.98286 -26.31399 -24.87920 -23.27666 -21.32064 -20.65120 -19.27646 -19.10352 -16.54988 -15.74548 -15.16011 -14.71456 -14.22352 -13.93998 -13.60522 -13.43160 -12.93954 -12.80434 -12.22478 -12.02430 -11.98321 -11.71465 -11.60544 -11.11967 -10.97325 -10.75254 -10.67046 -10.53532 -10.40126 -10.24644 -9.88168 -9.73200 -9.47965 -9.15028 -9.02092 -8.67687 -8.61583 -8.04181 -6.94993 -5.76352 -3.68541 3.39218 3.47416 3.52286 4.61330 4.88796 5.10934 5.19207 5.37907 5.41882 5.63063 5.79780 5.90993 5.94111 5.96799 6.13704 6.20367 6.21999 6.30650 6.33908 6.36903 6.49430 6.53496 6.58447 6.60222 6.62738 6.77935 6.80417 6.83186 7.05157 7.27460 7.30858 7.65692 7.81366 8.02400 8.16235 8.30461 8.49567 8.70099 8.82788 9.23484 9.83029 11.27973 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.010475 C = 0.009516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.224076 B = 2672.344339 C = 2941.552092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C 0.216 3.784 4 H 0.028 0.972 5 C -0.462 4.462 6 H 0.065 0.935 7 C 0.061 3.939 8 N -0.897 5.897 9 Si 0.884 3.116 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.293 1.293 13 N -0.532 5.532 14 C 0.062 3.938 15 C -0.116 4.116 16 C -0.110 4.110 17 C -0.088 4.088 18 H 0.070 0.930 19 C -0.147 4.147 20 C 0.101 3.899 21 H 0.055 0.945 22 C 0.068 3.932 23 O -0.487 6.487 24 H 0.020 0.980 25 H 0.046 0.954 26 H 0.032 0.968 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.254 0.746 30 H 0.029 0.971 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.023 0.977 40 H 0.044 0.956 41 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.804 2.080 10.601 11.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C 0.110 3.890 4 H 0.046 0.954 5 C -0.501 4.501 6 H 0.083 0.917 7 C -0.139 4.139 8 N -0.538 5.538 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.220 1.220 13 N -0.257 5.257 14 C -0.067 4.067 15 C -0.154 4.154 16 C -0.147 4.147 17 C -0.107 4.107 18 H 0.088 0.912 19 C -0.205 4.205 20 C -0.008 4.008 21 H 0.073 0.927 22 C -0.010 4.010 23 O -0.291 6.291 24 H 0.039 0.961 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.062 0.938 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.245 2.450 10.414 11.179 hybrid contribution 1.826 -0.327 -0.366 1.891 sum -1.419 2.123 10.048 10.367 Atomic orbital electron populations 1.21832 1.00303 0.98049 1.00039 1.22030 0.90695 0.99599 1.02825 1.19270 0.93999 0.91332 0.84392 0.95378 1.21562 0.92120 1.37475 0.98935 0.91736 1.24774 0.96753 0.96170 0.96195 1.69942 1.33997 1.44213 1.05698 0.86666 0.87496 0.77167 0.77232 1.20314 1.21584 1.22034 1.62423 1.45193 1.08112 1.09933 1.21894 0.99139 0.89970 0.95717 1.21606 0.98993 0.99055 0.95714 1.21563 0.99277 0.95890 0.98004 1.21199 0.98760 0.95573 0.95151 0.91177 1.21902 0.99138 1.01495 0.97948 1.21412 0.95133 0.93980 0.90228 0.92709 1.22155 0.94818 0.94965 0.89026 1.88297 1.72795 1.23695 1.44311 0.96063 0.93502 0.94900 0.90601 0.91781 0.93646 0.95290 0.91982 0.92762 0.91872 0.92604 0.92861 0.92967 0.93333 0.92451 0.95867 0.93793 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.86 37.16 0.37 -2.65 16 2 C -0.11 -2.65 4.56 -26.73 -0.12 -2.77 16 3 C 0.22 5.28 1.54 -68.86 -0.11 5.17 16 4 H 0.03 0.79 7.64 -51.93 -0.40 0.39 16 5 C -0.46 -12.16 4.96 -34.44 -0.17 -12.34 16 6 H 0.06 1.76 4.74 -52.49 -0.25 1.51 16 7 C 0.06 1.67 5.27 -17.82 -0.09 1.57 16 8 N -0.90 -25.75 11.69 55.43 0.65 -25.11 16 9 Si 0.88 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 13 N -0.53 -11.04 3.83 -220.14 -0.84 -11.88 16 14 C 0.06 1.18 5.32 -3.83 -0.02 1.16 16 15 C -0.12 -1.77 6.09 -26.65 -0.16 -1.94 16 16 C -0.11 -1.60 5.29 -26.61 -0.14 -1.74 16 17 C -0.09 -1.36 2.40 -90.54 -0.22 -1.58 16 18 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 19 C -0.15 -1.98 8.91 37.16 0.33 -1.65 16 20 C 0.10 1.95 1.32 -67.72 -0.09 1.86 16 21 H 0.06 1.22 5.91 -51.93 -0.31 0.92 16 22 C 0.07 1.27 5.52 37.16 0.21 1.47 16 23 O -0.49 -10.30 6.90 -35.23 -0.24 -10.55 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.94 7.67 -51.93 -0.40 0.54 16 26 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.08 2.02 6.37 -51.93 -0.33 1.69 16 28 H 0.06 1.41 3.11 -51.93 -0.16 1.25 16 29 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.20 7.90 -51.93 -0.41 0.79 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.75 6.14 -51.93 -0.32 0.43 16 39 H 0.02 0.38 5.78 -51.93 -0.30 0.08 16 40 H 0.04 0.83 6.49 -51.93 -0.34 0.49 16 41 H 0.32 5.71 9.06 45.56 0.41 6.12 16 LS Contribution 294.88 15.07 4.44 4.44 Total: -1.00 -28.45 294.88 -7.39 -35.84 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.16 Total: 3.76 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -0.22 Total: -13.43 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.19 Total: -36.99 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.24 Total: -10.55 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.45 -7.39 -35.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688664055.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.805 kcal (2) G-P(sol) polarization free energy of solvation -28.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds