Wall clock time and date at job start Sun Mar 29 2020 23:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46608 * 2 1 4 4 H 1.08998 * 109.47510 * 306.20770 * 3 2 1 5 5 C 1.50706 * 109.46929 * 186.21022 * 3 2 1 6 6 H 1.07999 * 120.00229 * 245.14629 * 5 3 2 7 7 C 1.37881 * 119.99489 * 65.14547 * 5 3 2 8 8 N 1.31508 * 120.00491 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99657 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47116 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47043 * 119.99698 * 9 7 5 12 12 H 1.48497 * 109.47308 * 239.99962 * 9 7 5 13 13 N 1.46903 * 109.47311 * 66.21557 * 3 2 1 14 14 C 1.46849 * 110.99667 * 209.06685 * 13 3 2 15 15 C 1.53035 * 109.51966 * 174.15931 * 14 13 3 16 16 C 1.53121 * 109.28178 * 59.17858 * 15 14 13 17 17 C 1.53114 * 109.15942 * 302.34558 * 16 15 14 18 18 H 1.09003 * 109.50544 * 297.71251 * 17 16 15 19 19 C 1.53002 * 109.50634 * 177.59276 * 17 16 15 20 20 C 1.46848 * 111.00273 * 84.85653 * 13 3 2 21 21 H 1.08997 * 109.46413 * 65.82210 * 20 13 3 22 22 C 1.53003 * 109.45747 * 305.85491 * 20 13 3 23 23 O 1.42897 * 109.47012 * 76.17535 * 22 20 13 24 24 H 1.08999 * 109.47020 * 184.75775 * 1 2 3 25 25 H 1.08990 * 109.47664 * 304.76486 * 1 2 3 26 26 H 1.09007 * 109.47011 * 64.76633 * 1 2 3 27 27 H 1.08996 * 109.47396 * 239.99947 * 2 1 3 28 28 H 1.09001 * 109.46734 * 119.99333 * 2 1 3 29 29 H 0.97003 * 120.00389 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.46397 * 294.17147 * 14 13 3 31 31 H 1.08992 * 109.46680 * 54.14306 * 14 13 3 32 32 H 1.09005 * 109.50257 * 179.12041 * 15 14 13 33 33 H 1.08999 * 109.50525 * 299.19372 * 15 14 13 34 34 H 1.08998 * 109.52188 * 62.24958 * 16 15 14 35 35 H 1.08996 * 109.52536 * 182.37828 * 16 15 14 36 36 H 1.08999 * 109.46641 * 300.20184 * 19 17 16 37 37 H 1.09004 * 109.46393 * 60.19737 * 19 17 16 38 38 H 1.08993 * 109.47435 * 180.19331 * 19 17 16 39 39 H 1.09004 * 109.46523 * 196.17136 * 22 20 13 40 40 H 1.08996 * 109.47271 * 316.17199 * 22 20 13 41 41 H 0.96711 * 113.99887 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5887 1.9874 -0.8292 5 6 3.5391 1.4454 -0.1537 6 1 4.1636 1.8087 0.6491 7 6 4.1134 0.9842 -1.3193 8 7 3.3530 0.5413 -2.2966 9 14 5.9716 0.9884 -1.5101 10 1 6.5947 1.5315 -0.2765 11 1 6.4492 -0.3996 -1.7355 12 1 6.3482 1.8359 -2.6699 13 7 1.6764 2.0904 1.2674 14 6 1.5000 3.5371 1.0872 15 6 0.9824 4.1550 2.3880 16 6 1.9849 3.8804 3.5123 17 6 2.1873 2.3686 3.6469 18 1 1.2433 1.8981 3.9217 19 6 3.2329 2.0874 4.7279 20 6 2.6701 1.8024 2.3096 21 1 3.6209 2.2632 2.0421 22 6 2.8544 0.2886 2.4337 23 8 3.6467 -0.1857 1.3431 24 1 -0.3633 -1.0241 0.0852 25 1 -0.3634 0.5859 0.8441 26 1 -0.3633 0.4381 -0.9297 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 3.7571 0.2172 -3.1168 30 1 2.4564 3.9898 0.8254 31 1 0.7816 3.7186 0.2878 32 1 0.8663 5.2311 2.2587 33 1 0.0190 3.7132 2.6427 34 1 2.9368 4.3557 3.2756 35 1 1.6003 4.2822 4.4496 36 1 4.1759 2.5599 4.4528 37 1 2.8885 2.4909 5.6801 38 1 3.3791 1.0113 4.8209 39 1 3.3561 0.0596 3.3739 40 1 1.8798 -0.1990 2.4137 41 1 3.8048 -1.1397 1.3575 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688664055.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:59 Heat of formation + Delta-G solvation = -44.858573 kcal Electronic energy + Delta-G solvation = -19824.945767 eV Core-core repulsion = 17125.893727 eV Total energy + Delta-G solvation = -2699.052039 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.84066 -37.32825 -36.13526 -33.93762 -33.18270 -32.24556 -28.63748 -27.89339 -26.36614 -25.09796 -22.84112 -22.06646 -21.10205 -20.60199 -18.27690 -17.53671 -16.85320 -16.56037 -15.74748 -15.43826 -15.09997 -14.98602 -14.46444 -14.37604 -13.98229 -13.55491 -13.39668 -13.24164 -13.09826 -12.91261 -12.76261 -12.45443 -12.28501 -12.16611 -11.95972 -11.66457 -11.46646 -11.31764 -11.16796 -10.91514 -10.69418 -10.54363 -10.23667 -10.08484 -8.75136 -7.84844 -5.82122 1.38655 1.42311 1.51521 2.55129 3.27351 3.40942 3.84081 3.97376 4.12358 4.28185 4.43560 4.57295 4.61658 4.66479 4.73833 4.80864 4.85151 4.86364 4.96042 5.00349 5.03180 5.05758 5.11205 5.16064 5.20125 5.34966 5.36426 5.41300 5.47355 5.54838 5.67175 5.78360 5.88198 6.03335 6.28542 6.33989 6.57420 6.86550 7.18278 7.33751 7.71511 9.17007 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.010475 C = 0.009516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.224076 B = 2672.344339 C = 2941.552092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.222 3.778 4 H -0.017 1.017 5 C -0.449 4.449 6 H 0.056 0.944 7 C 0.013 3.987 8 N -0.929 5.929 9 Si 0.937 3.063 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.298 1.298 13 N -0.527 5.527 14 C 0.058 3.942 15 C -0.106 4.106 16 C -0.108 4.108 17 C -0.082 4.082 18 H 0.078 0.922 19 C -0.142 4.142 20 C 0.100 3.900 21 H 0.020 0.980 22 C 0.069 3.931 23 O -0.519 6.519 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.018 0.982 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.250 0.750 30 H 0.003 0.997 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.248 2.200 13.454 14.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 C 0.115 3.885 4 H 0.001 0.999 5 C -0.488 4.488 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.573 5.573 9 Si 0.767 3.233 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.225 1.225 13 N -0.251 5.251 14 C -0.071 4.071 15 C -0.144 4.144 16 C -0.146 4.146 17 C -0.101 4.101 18 H 0.096 0.904 19 C -0.200 4.200 20 C -0.009 4.009 21 H 0.037 0.963 22 C -0.008 4.008 23 O -0.325 6.325 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.021 0.979 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.684 2.578 13.288 14.028 hybrid contribution 1.950 -0.346 -1.196 2.314 sum -1.733 2.232 12.092 12.418 Atomic orbital electron populations 1.21703 0.98279 0.99503 0.99681 1.21863 0.92436 0.98369 1.01746 1.19037 0.92633 0.91885 0.84913 0.99858 1.21689 0.93124 1.35782 0.98251 0.92613 1.25319 0.99781 0.96819 0.96354 1.70071 1.35096 1.46056 1.06070 0.85835 0.83898 0.76918 0.76685 1.20295 1.21349 1.22481 1.62438 1.45323 1.08842 1.08500 1.21988 0.97779 0.89221 0.98124 1.21548 0.99307 1.00038 0.93482 1.21586 0.98724 0.95225 0.99034 1.21175 0.99615 0.96080 0.93213 0.90372 1.21863 0.98022 1.01864 0.98235 1.21537 0.93145 0.94577 0.91672 0.96251 1.22249 0.94809 0.94330 0.89417 1.88091 1.73268 1.25112 1.45994 0.93839 0.92542 0.96301 0.94244 0.90167 0.94114 0.97863 0.93097 0.90634 0.90983 0.93505 0.89570 0.93822 0.90649 0.92077 0.92896 0.93613 0.81641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.51 9.86 71.98 0.71 -4.80 16 2 C -0.11 -4.99 4.56 30.59 0.14 -4.85 16 3 C 0.22 11.15 1.54 44.17 0.07 11.22 16 4 H -0.02 -0.97 7.64 -2.39 -0.02 -0.99 16 5 C -0.45 -24.27 4.96 25.60 0.13 -24.14 16 6 H 0.06 3.10 4.74 -2.91 -0.01 3.09 16 7 C 0.01 0.74 5.27 84.66 0.45 1.18 16 8 N -0.93 -55.30 11.69 21.45 0.25 -55.05 16 9 Si 0.94 46.14 29.54 68.60 2.03 48.16 16 10 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 11 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 12 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 13 N -0.53 -21.79 3.83 -850.39 -3.25 -25.04 16 14 C 0.06 2.22 5.32 86.32 0.46 2.68 16 15 C -0.11 -2.99 6.09 30.65 0.19 -2.81 16 16 C -0.11 -2.80 5.29 30.67 0.16 -2.64 16 17 C -0.08 -2.29 2.40 -10.74 -0.03 -2.31 16 18 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 19 C -0.14 -3.29 8.91 71.98 0.64 -2.65 16 20 C 0.10 3.71 1.32 44.94 0.06 3.77 16 21 H 0.02 0.88 5.91 -2.39 -0.01 0.86 16 22 C 0.07 2.44 5.52 71.98 0.40 2.84 16 23 O -0.52 -21.65 6.90 -148.98 -1.03 -22.67 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.06 2.19 7.67 -2.39 -0.02 2.17 16 26 H 0.02 0.78 8.14 -2.38 -0.02 0.77 16 27 H 0.04 2.15 6.37 -2.39 -0.02 2.13 16 28 H 0.08 3.48 3.11 -2.39 -0.01 3.47 16 29 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 30 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.05 2.02 7.90 -2.39 -0.02 2.00 16 32 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.06 1.36 6.14 -2.39 -0.01 1.35 16 39 H 0.05 1.57 5.78 -2.38 -0.01 1.56 16 40 H 0.05 1.61 6.49 -2.39 -0.02 1.60 16 41 H 0.34 11.73 9.06 -74.05 -0.67 11.06 16 Total: -1.00 -63.23 294.88 1.70 -61.53 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.33 Total: 15.58 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 3.37 Total: -22.50 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -3.00 Total: -80.09 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -1.03 Total: -22.67 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -63.23 1.70 -61.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688664055.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.670 kcal (2) G-P(sol) polarization free energy of solvation -63.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds