Wall clock time and date at job start Sun Mar 29 2020 23:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46733 * 2 1 4 4 H 1.09000 * 109.47308 * 301.22042 * 3 2 1 5 5 C 1.50703 * 109.46760 * 181.22277 * 3 2 1 6 6 H 1.07995 * 120.00066 * 245.17179 * 5 3 2 7 7 C 1.37885 * 120.00138 * 65.17529 * 5 3 2 8 8 N 1.31509 * 119.99491 * 359.97438 * 7 5 3 9 9 Si 1.86790 * 119.99950 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47571 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47222 * 119.99716 * 9 7 5 12 12 H 1.48507 * 109.47255 * 239.99492 * 9 7 5 13 13 N 1.46899 * 109.47730 * 61.22134 * 3 2 1 14 14 C 1.46847 * 110.99574 * 53.37068 * 13 3 2 15 15 C 1.53041 * 109.52278 * 185.83907 * 14 13 3 16 16 C 1.53119 * 109.27880 * 300.82095 * 15 14 13 17 17 C 1.53120 * 109.15842 * 57.65312 * 16 15 14 18 18 H 1.08995 * 109.50346 * 182.40297 * 17 16 15 19 19 C 1.53000 * 109.50426 * 62.28855 * 17 16 15 20 20 C 1.46843 * 111.00086 * 177.57700 * 13 3 2 21 21 H 1.08998 * 109.46733 * 294.17726 * 20 13 3 22 22 C 1.53007 * 109.45936 * 54.15117 * 20 13 3 23 23 O 1.42902 * 109.46777 * 292.61348 * 22 20 13 24 24 H 1.08992 * 109.47482 * 294.98569 * 1 2 3 25 25 H 1.08999 * 109.46756 * 54.98637 * 1 2 3 26 26 H 1.08999 * 109.47232 * 174.98269 * 1 2 3 27 27 H 1.08999 * 109.47368 * 239.99881 * 2 1 3 28 28 H 1.09003 * 109.46953 * 119.99543 * 2 1 3 29 29 H 0.97004 * 119.99673 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.46695 * 305.85858 * 14 13 3 31 31 H 1.09002 * 109.46619 * 65.82468 * 14 13 3 32 32 H 1.09000 * 109.49840 * 60.76530 * 15 14 13 33 33 H 1.08996 * 109.50600 * 180.88021 * 15 14 13 34 34 H 1.08998 * 109.52209 * 297.74920 * 16 15 14 35 35 H 1.08995 * 109.52295 * 177.55554 * 16 15 14 36 36 H 1.09000 * 109.46896 * 300.19124 * 19 17 16 37 37 H 1.08999 * 109.47834 * 60.19331 * 19 17 16 38 38 H 1.09006 * 109.47540 * 180.19842 * 19 17 16 39 39 H 1.09001 * 109.47377 * 52.61577 * 22 20 13 40 40 H 1.08998 * 109.46734 * 172.61575 * 22 20 13 41 41 H 0.96699 * 113.99555 * 185.01925 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6588 1.9626 -0.8788 5 6 3.5467 1.4426 -0.0303 6 1 4.1037 1.8293 0.8102 7 6 4.2142 0.9491 -1.1313 8 7 3.5358 0.4778 -2.1546 9 14 6.0817 0.9499 -1.1691 10 1 6.6022 1.5297 0.0951 11 1 6.5745 -0.4434 -1.3149 12 1 6.5532 1.7644 -2.3178 13 7 1.5746 2.1265 1.2139 14 6 1.9363 1.3668 2.4174 15 6 1.3125 2.0300 3.6475 16 6 1.8212 3.4700 3.7581 17 6 1.4742 4.2256 2.4724 18 1 1.8713 5.2392 2.5276 19 6 -0.0457 4.2800 2.3062 20 6 2.0934 3.4988 1.2763 21 1 3.1772 3.4726 1.3887 22 6 1.7323 4.2395 -0.0129 23 8 2.4485 3.6657 -1.1083 24 1 -0.3634 0.4340 0.9314 25 1 -0.3633 0.5896 -0.8417 26 1 -0.3634 -1.0237 -0.0899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 4.0054 0.1309 -2.9293 30 1 1.5651 0.3459 2.3277 31 1 3.0209 1.3506 2.5244 32 1 0.2271 2.0341 3.5476 33 1 1.5940 1.4749 4.5423 34 1 2.9023 3.4647 3.8971 35 1 1.3462 3.9598 4.6080 36 1 -0.4419 3.2660 2.2528 37 1 -0.4862 4.7977 3.1582 38 1 -0.2921 4.8150 1.3890 39 1 0.6609 4.1528 -0.1939 40 1 2.0003 5.2914 0.0853 41 1 2.3276 4.1339 -1.9457 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688664057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:01 Heat of formation + Delta-G solvation = -49.039287 kcal Electronic energy + Delta-G solvation = -19751.725854 eV Core-core repulsion = 17052.492525 eV Total energy + Delta-G solvation = -2699.233329 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.21188 -35.53580 -34.93876 -31.87664 -31.26744 -30.62553 -26.84755 -26.35152 -24.95068 -23.17813 -22.18909 -20.68795 -18.99136 -18.05474 -16.33931 -15.93981 -15.58120 -14.65267 -14.27783 -14.12276 -13.56570 -13.13988 -12.99635 -12.72896 -12.42826 -12.16312 -11.98405 -11.41744 -11.21176 -11.12725 -11.00981 -10.80888 -10.70443 -10.53208 -10.29548 -10.16360 -10.04780 -9.87312 -9.56429 -9.29259 -9.16792 -8.87617 -8.65682 -7.98527 -6.89715 -5.72775 -3.76237 3.38336 3.46421 3.49913 4.61271 4.95056 5.10460 5.24985 5.43527 5.53053 5.62243 5.83948 5.88551 5.95701 6.02952 6.10427 6.15610 6.24135 6.30206 6.34519 6.41681 6.44145 6.50565 6.59300 6.64983 6.72595 6.78124 6.87077 6.92380 7.05137 7.16461 7.36878 7.49122 7.88167 7.93841 8.24238 8.41049 8.60915 8.64851 8.71947 9.28726 9.85333 11.30274 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023448 B = 0.010014 C = 0.009405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.860952 B = 2795.465699 C = 2976.439101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 C 0.209 3.791 4 H 0.079 0.921 5 C -0.500 4.500 6 H 0.044 0.956 7 C 0.072 3.928 8 N -0.890 5.890 9 Si 0.875 3.125 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.524 5.524 14 C 0.056 3.944 15 C -0.118 4.118 16 C -0.111 4.111 17 C -0.085 4.085 18 H 0.058 0.942 19 C -0.137 4.137 20 C 0.099 3.901 21 H 0.049 0.951 22 C 0.085 3.915 23 O -0.512 6.512 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.022 0.978 27 H 0.081 0.919 28 H 0.030 0.970 29 H 0.253 0.747 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.036 0.964 38 H 0.047 0.953 39 H 0.040 0.960 40 H 0.024 0.976 41 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.835 6.149 6.978 10.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.154 4.154 3 C 0.104 3.896 4 H 0.096 0.904 5 C -0.540 4.540 6 H 0.062 0.938 7 C -0.128 4.128 8 N -0.530 5.530 9 Si 0.705 3.295 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.215 1.215 13 N -0.249 5.249 14 C -0.073 4.073 15 C -0.156 4.156 16 C -0.148 4.148 17 C -0.104 4.104 18 H 0.077 0.923 19 C -0.194 4.194 20 C -0.010 4.010 21 H 0.067 0.933 22 C 0.006 3.994 23 O -0.314 6.314 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.041 0.959 27 H 0.099 0.901 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.129 5.666 7.250 11.056 hybrid contribution 2.001 0.372 -0.443 2.083 sum -4.128 6.038 6.807 9.992 Atomic orbital electron populations 1.21698 0.99007 0.98085 1.00508 1.21726 0.92067 1.00414 1.01186 1.19623 0.92670 0.89536 0.87807 0.90390 1.21476 0.92564 1.38626 1.01311 0.93804 1.24710 0.96592 0.95786 0.95707 1.69909 1.34099 1.42746 1.06252 0.86829 0.88068 0.77094 0.77523 1.20492 1.21655 1.21459 1.62516 1.58323 1.00610 1.03451 1.21957 0.97786 0.97633 0.89888 1.21674 1.00924 0.95248 0.97778 1.21542 1.00274 0.96334 0.96667 1.21153 0.96511 0.97775 0.94919 0.92313 1.21781 0.95179 1.02736 0.99733 1.21323 0.97611 0.90563 0.91497 0.93340 1.22052 0.95060 0.93794 0.88497 1.87372 1.71910 1.54140 1.17977 0.93645 0.94150 0.95933 0.90096 0.95095 0.93720 0.91082 0.95174 0.91681 0.93062 0.92732 0.92900 0.90861 0.94442 0.93352 0.94172 0.95748 0.80900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.65 37.16 0.36 -2.40 16 2 C -0.12 -2.74 4.77 -26.73 -0.13 -2.87 16 3 C 0.21 5.05 1.19 -68.87 -0.08 4.96 16 4 H 0.08 2.08 5.49 -51.93 -0.28 1.80 16 5 C -0.50 -13.44 5.71 -34.44 -0.20 -13.64 16 6 H 0.04 1.23 5.86 -52.49 -0.31 0.93 16 7 C 0.07 2.01 5.32 -17.82 -0.09 1.91 16 8 N -0.89 -25.37 11.70 55.43 0.65 -24.72 16 9 Si 0.88 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 N -0.52 -10.71 3.20 -220.14 -0.71 -11.42 16 14 C 0.06 1.08 4.72 -3.83 -0.02 1.07 16 15 C -0.12 -1.85 5.74 -26.65 -0.15 -2.00 16 16 C -0.11 -1.63 5.51 -26.61 -0.15 -1.78 16 17 C -0.08 -1.31 2.74 -90.54 -0.25 -1.56 16 18 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 19 C -0.14 -1.95 8.39 37.16 0.31 -1.63 16 20 C 0.10 1.91 1.57 -67.72 -0.11 1.80 16 21 H 0.05 1.09 6.63 -51.93 -0.34 0.75 16 22 C 0.08 1.54 5.65 37.16 0.21 1.75 16 23 O -0.51 -10.86 9.09 -35.23 -0.32 -11.18 16 24 H 0.04 0.87 7.70 -51.93 -0.40 0.47 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 2.17 6.47 -51.93 -0.34 1.83 16 28 H 0.03 0.72 6.12 -51.93 -0.32 0.41 16 29 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.07 1.42 5.73 -51.93 -0.30 1.12 16 31 H 0.03 0.65 6.97 -51.93 -0.36 0.29 16 32 H 0.06 0.99 6.58 -51.93 -0.34 0.65 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.14 6.01 -51.93 -0.31 0.83 16 37 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.67 6.59 -51.93 -0.34 0.33 16 39 H 0.04 0.71 6.84 -51.93 -0.36 0.35 16 40 H 0.02 0.39 8.13 -51.93 -0.42 -0.03 16 41 H 0.35 5.92 9.12 45.56 0.42 6.34 16 LS Contribution 295.36 15.07 4.45 4.45 Total: -1.00 -28.81 295.36 -7.34 -36.15 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.10 Total: 4.15 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -0.29 Total: -14.38 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.06 Total: -36.14 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.32 Total: -11.18 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.81 -7.34 -36.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688664057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.892 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds