Wall clock time and date at job start Sun Mar 29 2020 23:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46733 * 2 1 4 4 H 1.09000 * 109.47308 * 301.22042 * 3 2 1 5 5 C 1.50703 * 109.46760 * 181.22277 * 3 2 1 6 6 H 1.07995 * 120.00066 * 245.17179 * 5 3 2 7 7 C 1.37885 * 120.00138 * 65.17529 * 5 3 2 8 8 N 1.31509 * 119.99491 * 359.97438 * 7 5 3 9 9 Si 1.86790 * 119.99950 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47571 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47222 * 119.99716 * 9 7 5 12 12 H 1.48507 * 109.47255 * 239.99492 * 9 7 5 13 13 N 1.46899 * 109.47730 * 61.22134 * 3 2 1 14 14 C 1.46847 * 110.99574 * 53.37068 * 13 3 2 15 15 C 1.53041 * 109.52278 * 185.83907 * 14 13 3 16 16 C 1.53119 * 109.27880 * 300.82095 * 15 14 13 17 17 C 1.53120 * 109.15842 * 57.65312 * 16 15 14 18 18 H 1.08995 * 109.50346 * 182.40297 * 17 16 15 19 19 C 1.53000 * 109.50426 * 62.28855 * 17 16 15 20 20 C 1.46843 * 111.00086 * 177.57700 * 13 3 2 21 21 H 1.08998 * 109.46733 * 294.17726 * 20 13 3 22 22 C 1.53007 * 109.45936 * 54.15117 * 20 13 3 23 23 O 1.42902 * 109.46777 * 292.61348 * 22 20 13 24 24 H 1.08992 * 109.47482 * 294.98569 * 1 2 3 25 25 H 1.08999 * 109.46756 * 54.98637 * 1 2 3 26 26 H 1.08999 * 109.47232 * 174.98269 * 1 2 3 27 27 H 1.08999 * 109.47368 * 239.99881 * 2 1 3 28 28 H 1.09003 * 109.46953 * 119.99543 * 2 1 3 29 29 H 0.97004 * 119.99673 * 179.97438 * 8 7 5 30 30 H 1.08998 * 109.46695 * 305.85858 * 14 13 3 31 31 H 1.09002 * 109.46619 * 65.82468 * 14 13 3 32 32 H 1.09000 * 109.49840 * 60.76530 * 15 14 13 33 33 H 1.08996 * 109.50600 * 180.88021 * 15 14 13 34 34 H 1.08998 * 109.52209 * 297.74920 * 16 15 14 35 35 H 1.08995 * 109.52295 * 177.55554 * 16 15 14 36 36 H 1.09000 * 109.46896 * 300.19124 * 19 17 16 37 37 H 1.08999 * 109.47834 * 60.19331 * 19 17 16 38 38 H 1.09006 * 109.47540 * 180.19842 * 19 17 16 39 39 H 1.09001 * 109.47377 * 52.61577 * 22 20 13 40 40 H 1.08998 * 109.46734 * 172.61575 * 22 20 13 41 41 H 0.96699 * 113.99555 * 185.01925 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6588 1.9626 -0.8788 5 6 3.5467 1.4426 -0.0303 6 1 4.1037 1.8293 0.8102 7 6 4.2142 0.9491 -1.1313 8 7 3.5358 0.4778 -2.1546 9 14 6.0817 0.9499 -1.1691 10 1 6.6022 1.5297 0.0951 11 1 6.5745 -0.4434 -1.3149 12 1 6.5532 1.7644 -2.3178 13 7 1.5746 2.1265 1.2139 14 6 1.9363 1.3668 2.4174 15 6 1.3125 2.0300 3.6475 16 6 1.8212 3.4700 3.7581 17 6 1.4742 4.2256 2.4724 18 1 1.8713 5.2392 2.5276 19 6 -0.0457 4.2800 2.3062 20 6 2.0934 3.4988 1.2763 21 1 3.1772 3.4726 1.3887 22 6 1.7323 4.2395 -0.0129 23 8 2.4485 3.6657 -1.1083 24 1 -0.3634 0.4340 0.9314 25 1 -0.3633 0.5896 -0.8417 26 1 -0.3634 -1.0237 -0.0899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 4.0054 0.1309 -2.9293 30 1 1.5651 0.3459 2.3277 31 1 3.0209 1.3506 2.5244 32 1 0.2271 2.0341 3.5476 33 1 1.5940 1.4749 4.5423 34 1 2.9023 3.4647 3.8971 35 1 1.3462 3.9598 4.6080 36 1 -0.4419 3.2660 2.2528 37 1 -0.4862 4.7977 3.1582 38 1 -0.2921 4.8150 1.3890 39 1 0.6609 4.1528 -0.1939 40 1 2.0003 5.2914 0.0853 41 1 2.3276 4.1339 -1.9457 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688664057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:01 Heat of formation + Delta-G solvation = -68.015392 kcal Electronic energy + Delta-G solvation = -19752.548719 eV Core-core repulsion = 17052.492525 eV Total energy + Delta-G solvation = -2700.056194 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.72710 -37.06158 -36.65569 -33.85032 -32.70908 -32.29585 -28.54800 -27.82279 -26.47974 -24.96271 -23.78474 -22.13853 -20.78318 -19.60589 -18.02255 -17.72989 -17.22209 -16.36679 -16.04262 -15.56683 -15.04322 -14.74915 -14.60339 -14.35609 -13.94687 -13.70193 -13.46445 -13.07699 -12.96265 -12.78094 -12.64392 -12.56718 -12.34656 -12.07965 -11.97303 -11.70301 -11.56287 -11.48151 -11.33121 -10.96156 -10.69915 -10.61795 -10.48568 -9.95349 -8.71394 -7.83346 -5.93720 1.34034 1.37832 1.45099 2.50933 3.38641 3.47639 3.68926 3.98689 4.13998 4.30776 4.49903 4.58072 4.61539 4.65226 4.67550 4.72637 4.81436 4.87324 4.92393 4.97628 5.02501 5.13671 5.17628 5.22792 5.32854 5.36745 5.42274 5.43423 5.53829 5.59028 5.64091 5.75949 5.81726 5.99416 6.28032 6.49464 6.59865 6.91537 7.21944 7.27474 7.69697 9.14648 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023448 B = 0.010014 C = 0.009405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.860952 B = 2795.465699 C = 2976.439101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C 0.217 3.783 4 H 0.057 0.943 5 C -0.495 4.495 6 H 0.023 0.977 7 C 0.030 3.970 8 N -0.911 5.911 9 Si 0.923 3.077 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.286 1.286 13 N -0.513 5.513 14 C 0.056 3.944 15 C -0.110 4.110 16 C -0.109 4.109 17 C -0.080 4.080 18 H 0.075 0.925 19 C -0.131 4.131 20 C 0.096 3.904 21 H 0.006 0.994 22 C 0.084 3.916 23 O -0.548 6.548 24 H 0.058 0.942 25 H 0.034 0.966 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.025 0.975 29 H 0.251 0.749 30 H 0.063 0.937 31 H -0.003 1.003 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.187 7.309 8.533 13.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.111 3.889 4 H 0.074 0.926 5 C -0.535 4.535 6 H 0.041 0.959 7 C -0.167 4.167 8 N -0.552 5.552 9 Si 0.752 3.248 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.212 1.212 13 N -0.238 5.238 14 C -0.073 4.073 15 C -0.147 4.147 16 C -0.147 4.147 17 C -0.099 4.099 18 H 0.093 0.907 19 C -0.188 4.188 20 C -0.014 4.014 21 H 0.024 0.976 22 C 0.006 3.994 23 O -0.352 6.352 24 H 0.077 0.923 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.015 0.985 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -7.483 6.839 8.813 13.433 hybrid contribution 2.443 0.036 -0.908 2.606 sum -5.040 6.875 7.905 11.626 Atomic orbital electron populations 1.21531 0.96063 0.99323 1.00931 1.21585 0.94649 0.99641 0.99205 1.19349 0.90835 0.89876 0.88862 0.92582 1.21612 0.94223 1.37420 1.00249 0.95888 1.25225 0.99550 0.96164 0.95808 1.70009 1.34982 1.43690 1.06548 0.86077 0.84651 0.76965 0.77099 1.20959 1.21401 1.21189 1.62493 1.57561 1.01180 1.02522 1.21998 0.96063 0.97847 0.91368 1.21615 1.01239 0.95736 0.96135 1.21563 0.99835 0.95840 0.97461 1.21155 0.97500 0.98038 0.93202 0.90654 1.21716 0.93645 1.02287 1.01118 1.21475 0.95437 0.90361 0.94092 0.97582 1.22175 0.95199 0.94824 0.87178 1.87302 1.72697 1.55684 1.19510 0.92308 0.94647 0.94124 0.93480 0.95594 0.93943 0.91893 0.98481 0.90427 0.91240 0.93986 0.89636 0.92258 0.91770 0.93105 0.93312 0.93144 0.79225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 9.65 71.98 0.69 -4.11 16 2 C -0.11 -5.40 4.77 30.60 0.15 -5.26 16 3 C 0.22 10.70 1.19 44.17 0.05 10.76 16 4 H 0.06 3.07 5.49 -2.39 -0.01 3.06 16 5 C -0.50 -27.46 5.71 25.60 0.15 -27.31 16 6 H 0.02 1.35 5.86 -2.91 -0.02 1.33 16 7 C 0.03 1.73 5.32 84.66 0.45 2.18 16 8 N -0.91 -53.21 11.70 21.45 0.25 -52.96 16 9 Si 0.92 46.15 29.54 68.60 2.03 48.18 16 10 H -0.28 -14.27 7.11 99.48 0.71 -13.56 16 11 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 12 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 13 N -0.51 -20.91 3.20 -850.38 -2.72 -23.63 16 14 C 0.06 2.16 4.72 86.33 0.41 2.56 16 15 C -0.11 -3.15 5.74 30.65 0.18 -2.98 16 16 C -0.11 -2.92 5.51 30.67 0.17 -2.75 16 17 C -0.08 -2.27 2.74 -10.74 -0.03 -2.30 16 18 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 19 C -0.13 -3.21 8.39 71.98 0.60 -2.61 16 20 C 0.10 3.63 1.57 44.94 0.07 3.70 16 21 H 0.01 0.29 6.63 -2.39 -0.02 0.27 16 22 C 0.08 2.99 5.65 71.98 0.41 3.39 16 23 O -0.55 -23.51 9.09 -148.98 -1.35 -24.87 16 24 H 0.06 2.16 7.70 -2.39 -0.02 2.14 16 25 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.05 2.58 6.47 -2.39 -0.02 2.56 16 28 H 0.03 1.23 6.12 -2.39 -0.01 1.22 16 29 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 30 H 0.06 2.50 5.73 -2.39 -0.01 2.48 16 31 H 0.00 -0.14 6.97 -2.39 -0.02 -0.16 16 32 H 0.08 2.09 6.58 -2.39 -0.02 2.07 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.64 6.01 -2.39 -0.01 1.63 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 38 H 0.05 1.22 6.59 -2.38 -0.02 1.21 16 39 H 0.05 1.64 6.84 -2.39 -0.02 1.63 16 40 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 41 H 0.36 12.49 9.12 -74.06 -0.68 11.81 16 Total: -1.00 -63.38 295.36 1.83 -61.56 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.33 Total: 16.45 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 3.29 Total: -24.72 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -2.47 Total: -76.60 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -1.35 Total: -24.87 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -63.38 1.83 -61.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688664057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.460 kcal (2) G-P(sol) polarization free energy of solvation -63.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds