Wall clock time and date at job start Sun Mar 29 2020 23:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46814 * 2 1 4 4 H 1.09005 * 109.46642 * 304.99753 * 3 2 1 5 5 C 1.50701 * 109.47094 * 185.00126 * 3 2 1 6 6 H 1.08002 * 119.99575 * 240.00034 * 5 3 2 7 7 C 1.37870 * 120.00303 * 59.99264 * 5 3 2 8 8 N 1.31516 * 119.99857 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00258 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47044 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47603 * 120.00084 * 9 7 5 12 12 H 1.48507 * 109.47249 * 240.00408 * 9 7 5 13 13 N 1.46897 * 109.47505 * 64.99528 * 3 2 1 14 14 C 1.46851 * 110.99910 * 63.02791 * 13 3 2 15 15 C 1.53034 * 109.52626 * 185.84188 * 14 13 3 16 16 C 1.53126 * 109.27402 * 300.81911 * 15 14 13 17 17 C 1.53117 * 109.16123 * 57.65578 * 16 15 14 18 18 H 1.09000 * 109.50455 * 62.28083 * 17 16 15 19 19 C 1.53000 * 109.50291 * 182.40152 * 17 16 15 20 20 C 1.46845 * 111.00195 * 187.23355 * 13 3 2 21 21 H 1.08992 * 109.46743 * 294.17067 * 20 13 3 22 22 C 1.53007 * 109.45743 * 54.14935 * 20 13 3 23 23 O 1.42900 * 109.47284 * 63.56789 * 22 20 13 24 24 H 1.09004 * 109.46731 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47625 * 300.00107 * 1 2 3 26 26 H 1.09002 * 109.47064 * 60.00448 * 1 2 3 27 27 H 1.08997 * 109.47625 * 239.99893 * 2 1 3 28 28 H 1.09002 * 109.47064 * 119.99552 * 2 1 3 29 29 H 0.97008 * 120.00202 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46158 * 65.81722 * 14 13 3 31 31 H 1.09002 * 109.45361 * 305.85000 * 14 13 3 32 32 H 1.08997 * 109.50815 * 180.88109 * 15 14 13 33 33 H 1.08997 * 109.53756 * 60.77691 * 15 14 13 34 34 H 1.08999 * 109.52044 * 177.55825 * 16 15 14 35 35 H 1.08994 * 109.52431 * 297.74688 * 16 15 14 36 36 H 1.08999 * 109.46944 * 59.99993 * 19 17 16 37 37 H 1.08998 * 109.46767 * 179.97438 * 19 17 16 38 38 H 1.08998 * 109.47108 * 300.00029 * 19 17 16 39 39 H 1.09001 * 109.46441 * 183.56694 * 22 20 13 40 40 H 1.08995 * 109.46923 * 303.56561 * 22 20 13 41 41 H 0.96702 * 113.99791 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8891 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8802 -1.3810 10 1 6.5987 1.5445 -0.1931 11 1 6.4963 -0.5188 -1.4624 12 1 6.4000 1.6158 -2.6091 13 7 1.6513 2.0994 1.2551 14 6 2.2780 1.4421 2.4091 15 6 1.7392 2.0569 3.7028 16 6 2.0475 3.5567 3.7164 17 6 1.4246 4.2091 2.4792 18 1 0.3413 4.0926 2.5127 19 6 1.7785 5.6974 2.4536 20 6 1.9725 3.5319 1.2209 21 1 3.0541 3.6607 1.1811 22 6 1.3374 4.1672 -0.0177 23 8 -0.0854 4.0715 0.0743 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0612 -2.9498 30 1 3.3582 1.5807 2.3634 31 1 2.0474 0.3770 2.3897 32 1 2.2162 1.5796 4.5588 33 1 0.6610 1.9066 3.7564 34 1 1.6275 4.0068 4.6159 35 1 3.1270 3.7069 3.7029 36 1 2.8618 5.8127 2.4182 37 1 1.3351 6.1611 1.5724 38 1 1.3910 6.1785 3.3516 39 1 1.6280 5.2161 -0.0773 40 1 1.6799 3.6440 -0.9104 41 1 -0.5549 4.4555 -0.6788 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688664061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:03 Heat of formation + Delta-G solvation = -60.654572 kcal Electronic energy + Delta-G solvation = -19450.827146 eV Core-core repulsion = 16751.090141 eV Total energy + Delta-G solvation = -2699.737005 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.08396 -35.72653 -35.02564 -32.21637 -31.48435 -30.76442 -27.04773 -26.24767 -25.04870 -23.33062 -21.77160 -20.55309 -19.10967 -18.72945 -16.61600 -16.12278 -15.38353 -14.95527 -14.42329 -13.97882 -13.64982 -13.16713 -12.83972 -12.63520 -12.47753 -12.36271 -12.12375 -11.74629 -11.43548 -11.20996 -11.09369 -10.94375 -10.85050 -10.58610 -10.34100 -10.21710 -10.07946 -9.89560 -9.57013 -9.41771 -9.22524 -9.13430 -8.82296 -8.28182 -6.95707 -5.95837 -4.10490 3.24542 3.33698 3.36810 4.39744 4.90946 5.06873 5.26352 5.31138 5.34632 5.47131 5.72014 5.95204 5.97365 5.99214 6.03730 6.10376 6.27280 6.36421 6.39309 6.40783 6.44764 6.53945 6.58520 6.67199 6.70495 6.79006 6.87669 6.93008 7.09708 7.22155 7.30268 7.45376 7.68615 7.81927 8.08662 8.22805 8.26137 8.44136 8.58295 9.02742 9.57256 11.01382 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.009503 C = 0.008865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.481058 B = 2945.671065 C = 3157.660759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 C 0.211 3.789 4 H 0.045 0.955 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.518 5.518 14 C 0.060 3.940 15 C -0.117 4.117 16 C -0.112 4.112 17 C -0.082 4.082 18 H 0.081 0.919 19 C -0.144 4.144 20 C 0.105 3.895 21 H 0.049 0.951 22 C 0.080 3.920 23 O -0.556 6.556 24 H 0.021 0.979 25 H 0.049 0.951 26 H 0.037 0.963 27 H 0.090 0.910 28 H 0.031 0.969 29 H 0.260 0.740 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.047 0.953 39 H 0.032 0.968 40 H 0.061 0.939 41 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.790 6.458 6.383 9.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 C 0.105 3.895 4 H 0.063 0.937 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.711 3.289 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.242 5.242 14 C -0.068 4.068 15 C -0.155 4.155 16 C -0.150 4.150 17 C -0.101 4.101 18 H 0.099 0.901 19 C -0.202 4.202 20 C -0.005 4.005 21 H 0.066 0.934 22 C 0.003 3.997 23 O -0.359 6.359 24 H 0.040 0.960 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.108 0.892 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -4.123 6.012 6.825 9.986 hybrid contribution 2.012 0.277 -0.851 2.202 sum -2.111 6.289 5.973 8.927 Atomic orbital electron populations 1.21671 0.98719 0.98021 1.00807 1.21605 0.92393 0.99274 1.01679 1.19358 0.92561 0.91167 0.86458 0.93708 1.21842 0.93176 1.37838 1.05264 0.92702 1.24900 0.97573 0.95140 0.95779 1.69893 1.34548 1.38461 1.09437 0.86683 0.86556 0.77732 0.77890 1.19999 1.21031 1.21096 1.62326 1.57576 1.00219 1.04121 1.21913 0.96661 0.98473 0.89752 1.21626 1.01214 0.95098 0.97567 1.21609 0.99975 0.96077 0.97326 1.21105 1.01365 0.93256 0.94329 0.90085 1.21845 1.00807 0.96529 1.01006 1.21382 0.96501 0.90139 0.92441 0.93360 1.22362 0.80892 0.97241 0.99242 1.86591 1.18392 1.83957 1.46932 0.95970 0.93161 0.94334 0.89204 0.95040 0.93029 0.94891 0.91277 0.92977 0.91936 0.93048 0.92886 0.93344 0.92731 0.93388 0.95013 0.92077 0.79437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.80 37.16 0.36 -2.50 16 2 C -0.11 -2.67 5.11 -26.73 -0.14 -2.81 16 3 C 0.21 5.12 1.39 -68.86 -0.10 5.02 16 4 H 0.05 1.20 5.72 -51.93 -0.30 0.90 16 5 C -0.54 -14.27 7.20 -34.44 -0.25 -14.52 16 6 H 0.05 1.47 5.84 -52.49 -0.31 1.17 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.59 11.29 55.43 0.63 -23.97 16 9 Si 0.88 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.52 -11.00 3.84 -220.13 -0.85 -11.85 16 14 C 0.06 1.21 4.80 -3.83 -0.02 1.19 16 15 C -0.12 -1.94 6.09 -26.65 -0.16 -2.10 16 16 C -0.11 -1.75 5.29 -26.61 -0.14 -1.89 16 17 C -0.08 -1.35 2.23 -90.54 -0.20 -1.55 16 18 H 0.08 1.46 7.57 -51.93 -0.39 1.06 16 19 C -0.14 -2.02 8.86 37.16 0.33 -1.69 16 20 C 0.10 2.03 1.44 -67.72 -0.10 1.93 16 21 H 0.05 1.04 7.11 -51.93 -0.37 0.67 16 22 C 0.08 1.47 5.83 37.16 0.22 1.69 16 23 O -0.56 -9.67 12.75 -35.23 -0.45 -10.12 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 1.05 7.75 -51.93 -0.40 0.65 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 2.40 5.95 -51.93 -0.31 2.09 16 28 H 0.03 0.74 6.12 -51.93 -0.32 0.43 16 29 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.03 0.72 6.51 -51.93 -0.34 0.38 16 31 H 0.07 1.43 6.01 -51.93 -0.31 1.12 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.75 6.54 -51.93 -0.34 0.41 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.51 6.65 -51.93 -0.35 0.17 16 40 H 0.06 1.29 5.96 -51.93 -0.31 0.98 16 41 H 0.36 4.64 9.12 45.56 0.42 5.06 16 LS Contribution 302.38 15.07 4.56 4.56 Total: -1.00 -28.03 302.38 -7.56 -35.59 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.14 Total: 5.29 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -0.29 Total: -15.47 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.22 Total: -35.81 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.45 Total: -10.12 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.03 -7.56 -35.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688664061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.060 kcal (2) G-P(sol) polarization free energy of solvation -28.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds