Wall clock time and date at job start Sun Mar 29 2020 23:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46814 * 2 1 4 4 H 1.09005 * 109.46642 * 304.99753 * 3 2 1 5 5 C 1.50701 * 109.47094 * 185.00126 * 3 2 1 6 6 H 1.08002 * 119.99575 * 240.00034 * 5 3 2 7 7 C 1.37870 * 120.00303 * 59.99264 * 5 3 2 8 8 N 1.31516 * 119.99857 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00258 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47044 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47603 * 120.00084 * 9 7 5 12 12 H 1.48507 * 109.47249 * 240.00408 * 9 7 5 13 13 N 1.46897 * 109.47505 * 64.99528 * 3 2 1 14 14 C 1.46851 * 110.99910 * 63.02791 * 13 3 2 15 15 C 1.53034 * 109.52626 * 185.84188 * 14 13 3 16 16 C 1.53126 * 109.27402 * 300.81911 * 15 14 13 17 17 C 1.53117 * 109.16123 * 57.65578 * 16 15 14 18 18 H 1.09000 * 109.50455 * 62.28083 * 17 16 15 19 19 C 1.53000 * 109.50291 * 182.40152 * 17 16 15 20 20 C 1.46845 * 111.00195 * 187.23355 * 13 3 2 21 21 H 1.08992 * 109.46743 * 294.17067 * 20 13 3 22 22 C 1.53007 * 109.45743 * 54.14935 * 20 13 3 23 23 O 1.42900 * 109.47284 * 63.56789 * 22 20 13 24 24 H 1.09004 * 109.46731 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47625 * 300.00107 * 1 2 3 26 26 H 1.09002 * 109.47064 * 60.00448 * 1 2 3 27 27 H 1.08997 * 109.47625 * 239.99893 * 2 1 3 28 28 H 1.09002 * 109.47064 * 119.99552 * 2 1 3 29 29 H 0.97008 * 120.00202 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46158 * 65.81722 * 14 13 3 31 31 H 1.09002 * 109.45361 * 305.85000 * 14 13 3 32 32 H 1.08997 * 109.50815 * 180.88109 * 15 14 13 33 33 H 1.08997 * 109.53756 * 60.77691 * 15 14 13 34 34 H 1.08999 * 109.52044 * 177.55825 * 16 15 14 35 35 H 1.08994 * 109.52431 * 297.74688 * 16 15 14 36 36 H 1.08999 * 109.46944 * 59.99993 * 19 17 16 37 37 H 1.08998 * 109.46767 * 179.97438 * 19 17 16 38 38 H 1.08998 * 109.47108 * 300.00029 * 19 17 16 39 39 H 1.09001 * 109.46441 * 183.56694 * 22 20 13 40 40 H 1.08995 * 109.46923 * 303.56561 * 22 20 13 41 41 H 0.96702 * 113.99791 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8891 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8802 -1.3810 10 1 6.5987 1.5445 -0.1931 11 1 6.4963 -0.5188 -1.4624 12 1 6.4000 1.6158 -2.6091 13 7 1.6513 2.0994 1.2551 14 6 2.2780 1.4421 2.4091 15 6 1.7392 2.0569 3.7028 16 6 2.0475 3.5567 3.7164 17 6 1.4246 4.2091 2.4792 18 1 0.3413 4.0926 2.5127 19 6 1.7785 5.6974 2.4536 20 6 1.9725 3.5319 1.2209 21 1 3.0541 3.6607 1.1811 22 6 1.3374 4.1672 -0.0177 23 8 -0.0854 4.0715 0.0743 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0612 -2.9498 30 1 3.3582 1.5807 2.3634 31 1 2.0474 0.3770 2.3897 32 1 2.2162 1.5796 4.5588 33 1 0.6610 1.9066 3.7564 34 1 1.6275 4.0068 4.6159 35 1 3.1270 3.7069 3.7029 36 1 2.8618 5.8127 2.4182 37 1 1.3351 6.1611 1.5724 38 1 1.3910 6.1785 3.3516 39 1 1.6280 5.2161 -0.0773 40 1 1.6799 3.6440 -0.9104 41 1 -0.5549 4.4555 -0.6788 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688664061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:03 Heat of formation + Delta-G solvation = -79.471241 kcal Electronic energy + Delta-G solvation = -19451.643098 eV Core-core repulsion = 16751.090141 eV Total energy + Delta-G solvation = -2700.552957 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.63680 -37.23436 -36.63718 -34.07565 -32.97904 -32.48480 -28.72421 -27.87825 -26.51702 -25.15558 -23.40505 -21.99046 -20.72034 -20.44915 -18.23017 -17.90310 -17.13251 -16.57317 -16.13517 -15.38272 -15.11395 -14.97304 -14.41920 -14.38300 -13.90967 -13.81835 -13.55667 -13.24354 -13.16883 -12.84352 -12.80366 -12.66555 -12.44846 -12.23256 -12.07799 -11.72604 -11.65408 -11.51952 -11.38136 -11.07621 -10.88132 -10.71880 -10.52213 -10.25282 -8.78073 -7.98736 -6.23234 1.33342 1.37195 1.45986 2.39515 3.16127 3.39014 3.66586 3.99583 4.01326 4.12971 4.38760 4.53279 4.55445 4.58549 4.65814 4.73822 4.78534 4.84009 4.90147 4.94829 5.03462 5.05415 5.12345 5.12724 5.19777 5.33221 5.40466 5.43411 5.45984 5.49871 5.56053 5.63773 5.74579 5.85881 6.12750 6.27958 6.48561 6.80698 7.02422 7.08537 7.47805 8.93230 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.009503 C = 0.008865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.481058 B = 2945.671065 C = 3157.660759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 C 0.219 3.781 4 H 0.018 0.982 5 C -0.547 4.547 6 H 0.044 0.956 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.941 3.059 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.281 1.281 13 N -0.517 5.517 14 C 0.061 3.939 15 C -0.110 4.110 16 C -0.110 4.110 17 C -0.074 4.074 18 H 0.071 0.929 19 C -0.139 4.139 20 C 0.099 3.901 21 H 0.023 0.977 22 C 0.089 3.911 23 O -0.565 6.565 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.060 0.940 28 H 0.028 0.972 29 H 0.260 0.740 30 H 0.010 0.990 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.025 0.975 41 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.130 7.579 7.927 11.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.146 4.146 3 C 0.112 3.888 4 H 0.036 0.964 5 C -0.586 4.586 6 H 0.062 0.938 7 C -0.177 4.177 8 N -0.549 5.549 9 Si 0.767 3.233 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.241 5.241 14 C -0.068 4.068 15 C -0.147 4.147 16 C -0.148 4.148 17 C -0.093 4.093 18 H 0.090 0.910 19 C -0.197 4.197 20 C -0.010 4.010 21 H 0.041 0.959 22 C 0.011 3.989 23 O -0.370 6.370 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.043 0.957 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.475 7.147 8.370 11.881 hybrid contribution 2.085 -0.065 -1.344 2.482 sum -2.389 7.082 7.026 10.258 Atomic orbital electron populations 1.21502 0.96404 0.99290 1.00542 1.21479 0.94409 0.98753 1.00002 1.19101 0.91236 0.91215 0.87260 0.96417 1.22026 0.94400 1.37313 1.04873 0.93752 1.25552 1.01336 0.95097 0.95669 1.70010 1.35944 1.39139 1.09810 0.85780 0.82053 0.77647 0.77784 1.19881 1.20787 1.20642 1.62313 1.57329 1.01287 1.03125 1.21940 0.95375 0.98193 0.91264 1.21576 1.01262 0.95942 0.95958 1.21621 0.99909 0.95219 0.98022 1.21044 1.00487 0.94808 0.92997 0.91009 1.21799 1.00983 0.94548 1.02326 1.21500 0.95364 0.89280 0.94858 0.95884 1.22162 0.81498 0.98085 0.97167 1.86525 1.17747 1.84475 1.48299 0.93931 0.92796 0.95026 0.92106 0.95337 0.93045 0.97211 0.92480 0.90781 0.91702 0.90080 0.93209 0.93304 0.92506 0.91070 0.92376 0.95678 0.77077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 9.80 71.98 0.71 -4.36 16 2 C -0.11 -5.30 5.11 30.60 0.16 -5.14 16 3 C 0.22 10.95 1.39 44.17 0.06 11.01 16 4 H 0.02 1.00 5.72 -2.38 -0.01 0.99 16 5 C -0.55 -29.63 7.20 25.60 0.18 -29.44 16 6 H 0.04 2.45 5.84 -2.91 -0.02 2.44 16 7 C 0.02 1.27 5.29 84.65 0.45 1.72 16 8 N -0.91 -51.85 11.29 21.44 0.24 -51.61 16 9 Si 0.94 43.75 29.54 68.60 2.03 45.78 16 10 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 N -0.52 -22.11 3.84 -850.37 -3.27 -25.38 16 14 C 0.06 2.43 4.80 86.32 0.41 2.85 16 15 C -0.11 -3.40 6.09 30.65 0.19 -3.22 16 16 C -0.11 -3.13 5.29 30.68 0.16 -2.97 16 17 C -0.07 -2.31 2.23 -10.74 -0.02 -2.33 16 18 H 0.07 2.40 7.57 -2.39 -0.02 2.38 16 19 C -0.14 -3.48 8.86 71.98 0.64 -2.84 16 20 C 0.10 3.83 1.44 44.94 0.06 3.89 16 21 H 0.02 1.01 7.11 -2.39 -0.02 1.00 16 22 C 0.09 3.25 5.83 71.98 0.42 3.67 16 23 O -0.56 -19.07 12.75 -148.98 -1.90 -20.97 16 24 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 25 H 0.05 2.21 7.75 -2.39 -0.02 2.19 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 3.35 5.95 -2.39 -0.01 3.34 16 28 H 0.03 1.37 6.12 -2.39 -0.01 1.36 16 29 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 30 H 0.01 0.43 6.51 -2.39 -0.02 0.41 16 31 H 0.06 2.38 6.01 -2.39 -0.01 2.37 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.39 6.54 -2.39 -0.02 1.37 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.80 6.65 -2.39 -0.02 1.78 16 40 H 0.03 1.09 5.96 -2.39 -0.01 1.08 16 41 H 0.38 9.31 9.12 -74.06 -0.68 8.63 16 Total: -1.00 -60.87 302.38 0.85 -60.02 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.33 Total: 19.32 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 3.42 Total: -27.17 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -3.02 Total: -76.99 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -1.90 Total: -20.97 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -60.87 0.85 -60.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688664061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.449 kcal (2) G-P(sol) polarization free energy of solvation -60.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds