Wall clock time and date at job start Sun Mar 29 2020 23:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47216 * 2 1 4 4 H 1.08994 * 109.47331 * 305.27109 * 3 2 1 5 5 C 1.50701 * 109.47118 * 185.27080 * 3 2 1 6 6 H 1.08001 * 119.99605 * 274.65988 * 5 3 2 7 7 C 1.37875 * 119.99991 * 94.66585 * 5 3 2 8 8 N 1.31514 * 120.00102 * 183.74974 * 7 5 3 9 9 Si 1.86801 * 120.00069 * 3.74203 * 7 5 3 10 10 H 1.48499 * 109.47174 * 93.49384 * 9 7 5 11 11 H 1.48497 * 109.47342 * 213.49971 * 9 7 5 12 12 H 1.48501 * 109.46941 * 333.49777 * 9 7 5 13 13 N 1.46902 * 109.47019 * 65.26899 * 3 2 1 14 14 C 1.46850 * 110.99899 * 70.62370 * 13 3 2 15 15 C 1.53168 * 109.55795 * 185.83977 * 14 13 3 16 16 H 1.08996 * 109.49075 * 60.74490 * 15 14 13 17 17 C 1.53003 * 109.58986 * 180.91094 * 15 14 13 18 18 O 1.42904 * 109.46973 * 184.76817 * 17 15 14 19 19 C 1.53119 * 109.20938 * 300.85877 * 15 14 13 20 20 C 1.53121 * 109.21146 * 57.61954 * 19 15 14 21 21 C 1.46850 * 111.00115 * 194.82758 * 13 3 2 22 22 H 1.09002 * 109.45518 * 54.14920 * 21 13 3 23 23 C 1.52992 * 109.45583 * 294.17632 * 21 13 3 24 24 H 1.08998 * 109.47139 * 59.99358 * 1 2 3 25 25 H 1.08992 * 109.47302 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47193 * 300.00250 * 1 2 3 27 27 H 1.08994 * 109.47186 * 240.00180 * 2 1 3 28 28 H 1.08997 * 109.47455 * 119.99738 * 2 1 3 29 29 H 0.97001 * 120.00298 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.46262 * 305.85687 * 14 13 3 31 31 H 1.09005 * 109.46217 * 65.83012 * 14 13 3 32 32 H 1.08999 * 109.46683 * 304.76776 * 17 15 14 33 33 H 1.08994 * 109.46922 * 64.76841 * 17 15 14 34 34 H 0.96703 * 113.99306 * 180.02562 * 18 17 15 35 35 H 1.09003 * 109.52100 * 297.69093 * 19 15 14 36 36 H 1.08993 * 109.52669 * 177.56026 * 19 15 14 37 37 H 1.09001 * 109.49748 * 62.26006 * 20 19 15 38 38 H 1.09000 * 109.50364 * 182.33066 * 20 19 15 39 39 H 1.08999 * 109.47542 * 308.43240 * 23 21 13 40 40 H 1.09001 * 109.47527 * 68.43536 * 23 21 13 41 41 H 1.09003 * 109.47017 * 188.43332 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6017 1.9829 -0.8390 5 6 3.5414 1.4445 -0.1305 6 1 4.1599 1.3407 0.7487 7 6 4.1252 1.5789 -1.3723 8 7 5.4326 1.5068 -1.4956 9 14 3.0593 1.8634 -2.8797 10 1 2.9409 3.3216 -3.1343 11 1 3.6801 1.2041 -4.0566 12 1 1.7092 1.2905 -2.6465 13 7 1.6569 2.0973 1.2580 14 6 2.4245 1.5571 2.3874 15 6 1.8999 2.1548 3.6964 16 1 0.8511 1.8868 3.8241 17 6 2.7139 1.6098 4.8717 18 8 2.1532 2.0812 6.0988 19 6 2.0352 3.6791 3.6442 20 6 1.2670 4.2119 2.4314 21 6 1.8100 3.5546 1.1607 22 1 1.2554 3.9210 0.2968 23 6 3.2914 3.9018 1.0002 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 5.8434 1.6017 -2.3691 30 1 2.3163 0.4728 2.4145 31 1 3.4770 1.8142 2.2673 32 1 2.6898 0.5202 4.8561 33 1 3.7455 1.9517 4.7887 34 1 2.6203 1.7744 6.8880 35 1 3.0877 3.9486 3.5556 36 1 1.6235 4.1129 4.5554 37 1 0.2082 3.9761 2.5392 38 1 1.3943 5.2924 2.3660 39 1 3.8671 3.4086 1.7834 40 1 3.6404 3.5630 0.0247 41 1 3.4221 4.9811 1.0781 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688730064.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:49 Heat of formation + Delta-G solvation = -78.728206 kcal Electronic energy + Delta-G solvation = -19298.799633 eV Core-core repulsion = 16598.278896 eV Total energy + Delta-G solvation = -2700.520737 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.87024 -37.91978 -36.18790 -34.12434 -33.36956 -32.04951 -28.89687 -28.65891 -26.18522 -24.71435 -24.11987 -22.20009 -20.98092 -19.54430 -18.91142 -17.95040 -17.25772 -16.26192 -15.98220 -15.79682 -15.37851 -15.03235 -14.70239 -14.54209 -14.03101 -13.74563 -13.64934 -13.45794 -13.20401 -13.11263 -12.95137 -12.49974 -12.46432 -12.07768 -11.96643 -11.71487 -11.58021 -11.51216 -11.34491 -11.07424 -11.01428 -10.88622 -10.75325 -10.47996 -8.76258 -8.23386 -6.18308 1.30782 1.36394 1.44541 2.35966 3.04865 3.23783 3.66239 3.88634 4.03099 4.15077 4.40278 4.42334 4.47392 4.58158 4.60211 4.66378 4.72659 4.76193 4.78136 4.86226 4.92441 4.99242 5.04549 5.09462 5.21469 5.26149 5.28393 5.38710 5.41707 5.47780 5.54758 5.57721 5.59506 5.72661 5.89024 6.28263 6.52170 6.65221 6.83117 6.95637 7.42127 8.92116 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026126 B = 0.008570 C = 0.008059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.489904 B = 3266.317647 C = 3473.609512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.176 3.824 4 H 0.034 0.966 5 C -0.508 4.508 6 H 0.048 0.952 7 C 0.021 3.979 8 N -0.946 5.946 9 Si 0.916 3.084 10 H -0.276 1.276 11 H -0.293 1.293 12 H -0.241 1.241 13 N -0.515 5.515 14 C 0.071 3.929 15 C -0.078 4.078 16 H 0.075 0.925 17 C 0.087 3.913 18 O -0.584 6.584 19 C -0.102 4.102 20 C -0.102 4.102 21 C 0.085 3.915 22 H 0.063 0.937 23 C -0.169 4.169 24 H 0.039 0.961 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.260 0.740 30 H 0.060 0.940 31 H 0.026 0.974 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.395 0.605 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.056 0.944 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.603 1.813 9.769 13.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.145 4.145 3 C 0.068 3.932 4 H 0.052 0.948 5 C -0.547 4.547 6 H 0.066 0.934 7 C -0.176 4.176 8 N -0.587 5.587 9 Si 0.741 3.259 10 H -0.201 1.201 11 H -0.219 1.219 12 H -0.165 1.165 13 N -0.238 5.238 14 C -0.057 4.057 15 C -0.097 4.097 16 H 0.093 0.907 17 C 0.009 3.991 18 O -0.392 6.392 19 C -0.139 4.139 20 C -0.139 4.139 21 C -0.024 4.024 22 H 0.081 0.919 23 C -0.227 4.227 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.244 0.756 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.401 2.000 9.316 13.385 hybrid contribution 1.720 -0.102 -0.977 1.981 sum -7.681 1.898 8.339 11.495 Atomic orbital electron populations 1.21642 0.95187 1.00732 1.01530 1.21608 0.95736 0.97283 0.99861 1.19737 0.92092 0.92386 0.88987 0.94791 1.21746 0.92286 1.47184 0.93481 0.93387 1.25633 0.95403 0.95259 1.01317 1.70049 1.11202 1.52853 1.24578 0.86193 0.81003 0.78698 0.79971 1.20130 1.21939 1.16469 1.62502 1.54149 1.03376 1.03769 1.21831 0.95714 0.98316 0.89850 1.21118 1.00237 0.96013 0.92324 0.90706 1.22049 0.95600 0.97459 0.84034 1.86411 1.59502 1.76869 1.16400 1.21466 0.99783 0.94679 0.97993 1.21569 0.99928 0.99282 0.93172 1.21561 0.94294 0.88644 0.97931 0.91895 1.22489 0.98331 0.98948 1.02933 0.94227 0.92721 0.91795 0.94489 0.93144 0.93066 0.92169 0.95550 0.92971 0.93984 0.75577 0.93336 0.91166 0.91175 0.90843 0.93937 0.92529 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 9.80 71.98 0.71 -3.72 16 2 C -0.11 -4.28 5.38 30.59 0.16 -4.12 16 3 C 0.18 7.75 1.25 44.17 0.06 7.81 16 4 H 0.03 1.56 4.92 -2.39 -0.01 1.55 16 5 C -0.51 -26.53 5.19 25.60 0.13 -26.40 16 6 H 0.05 2.79 5.88 -2.91 -0.02 2.78 16 7 C 0.02 1.18 4.83 84.65 0.41 1.59 16 8 N -0.95 -57.07 13.96 21.45 0.30 -56.77 16 9 Si 0.92 43.14 27.23 68.60 1.87 45.00 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 12 H -0.24 -10.57 6.48 99.48 0.64 -9.93 16 13 N -0.52 -19.93 4.03 -850.12 -3.43 -23.36 16 14 C 0.07 2.63 3.71 86.37 0.32 2.95 16 15 C -0.08 -2.37 2.60 -10.70 -0.03 -2.40 16 16 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 17 C 0.09 2.26 6.44 71.98 0.46 2.72 16 18 O -0.58 -13.61 13.24 -148.98 -1.97 -15.59 16 19 C -0.10 -2.99 4.85 30.67 0.15 -2.84 16 20 C -0.10 -3.02 5.60 30.65 0.17 -2.84 16 21 C 0.08 3.11 2.91 44.93 0.13 3.24 16 22 H 0.06 2.34 7.97 -2.39 -0.02 2.32 16 23 C -0.17 -6.94 7.21 71.98 0.52 -6.42 16 24 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.06 2.07 7.76 -2.38 -0.02 2.05 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 2.01 6.42 -2.39 -0.02 1.99 16 29 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.06 2.26 6.35 -2.39 -0.02 2.24 16 31 H 0.03 1.14 4.19 -2.38 -0.01 1.13 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.39 5.29 9.12 -74.06 -0.68 4.61 16 35 H 0.05 1.52 6.76 -2.39 -0.02 1.50 16 36 H 0.07 1.92 7.89 -2.39 -0.02 1.90 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.04 1.82 4.74 -2.39 -0.01 1.81 16 40 H 0.06 2.78 5.27 -2.39 -0.01 2.77 16 41 H 0.04 1.58 8.13 -2.39 -0.02 1.56 16 Total: -1.00 -61.27 297.75 0.23 -61.04 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.27 Total: 20.10 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 3.19 Total: -30.43 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -3.13 Total: -80.13 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -1.97 Total: -15.59 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.87 Total: 45.00 kcal Total: -61.27 0.23 -61.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688730064.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.688 kcal (2) G-P(sol) polarization free energy of solvation -61.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds