Wall clock time and date at job start Sun Mar 29 2020 23:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47441 * 2 1 4 4 H 1.09001 * 109.47026 * 325.10916 * 3 2 1 5 5 C 1.50695 * 109.47302 * 205.10349 * 3 2 1 6 6 H 1.08000 * 120.00350 * 246.09124 * 5 3 2 7 7 C 1.37882 * 119.99985 * 66.09930 * 5 3 2 8 8 N 1.31515 * 119.99786 * 187.72487 * 7 5 3 9 9 Si 1.86798 * 119.99895 * 7.71711 * 7 5 3 10 10 H 1.48504 * 109.47113 * 95.25716 * 9 7 5 11 11 H 1.48497 * 109.47361 * 215.25474 * 9 7 5 12 12 H 1.48504 * 109.47251 * 335.25490 * 9 7 5 13 13 N 1.46899 * 109.46742 * 85.10332 * 3 2 1 14 14 C 1.46854 * 110.99909 * 58.08294 * 13 3 2 15 15 C 1.53039 * 109.51935 * 174.15923 * 14 13 3 16 16 H 1.09000 * 109.50561 * 299.23247 * 15 14 13 17 17 C 1.53001 * 109.49865 * 179.12115 * 15 14 13 18 18 O 1.42900 * 109.46968 * 175.00094 * 17 15 14 19 19 C 1.53116 * 109.28206 * 59.17957 * 15 14 13 20 20 C 1.53119 * 109.16082 * 302.34217 * 19 15 14 21 21 C 1.46847 * 111.00402 * 293.87362 * 13 3 2 22 22 H 1.08996 * 109.46275 * 65.82456 * 21 13 3 23 23 C 1.53005 * 109.45843 * 305.85668 * 21 13 3 24 24 H 1.09006 * 109.47169 * 289.97700 * 1 2 3 25 25 H 1.08998 * 109.47336 * 49.97945 * 1 2 3 26 26 H 1.09004 * 109.47284 * 169.98276 * 1 2 3 27 27 H 1.09003 * 109.46725 * 240.00424 * 2 1 3 28 28 H 1.08996 * 109.47379 * 120.00637 * 2 1 3 29 29 H 0.96998 * 119.99615 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.45916 * 294.17481 * 14 13 3 31 31 H 1.08998 * 109.46216 * 54.15567 * 14 13 3 32 32 H 1.09003 * 109.46997 * 294.99811 * 17 15 14 33 33 H 1.09000 * 109.47514 * 54.99805 * 17 15 14 34 34 H 0.96700 * 113.99816 * 180.02562 * 18 17 15 35 35 H 1.09004 * 109.51935 * 62.24509 * 19 15 14 36 36 H 1.08994 * 109.52421 * 182.37403 * 19 15 14 37 37 H 1.09002 * 109.50542 * 177.58997 * 20 19 15 38 38 H 1.08999 * 109.50345 * 297.67719 * 20 19 15 39 39 H 1.08995 * 109.47388 * 63.11245 * 23 21 13 40 40 H 1.08997 * 109.46652 * 183.11938 * 23 21 13 41 41 H 1.08999 * 109.47010 * 303.11343 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3664 2.0660 -0.5878 5 6 3.4204 1.4871 -0.6028 6 1 4.2684 1.7573 0.0091 7 6 3.6009 1.1833 -1.9355 8 7 4.8162 1.0734 -2.4261 9 14 2.1194 0.9276 -3.0441 10 1 1.8024 2.1966 -3.7473 11 1 2.4245 -0.1286 -4.0424 12 1 0.9534 0.5115 -2.2240 13 7 2.0918 1.9434 1.3800 14 6 2.9562 1.0989 2.2143 15 6 3.1025 1.7296 3.6010 16 1 3.5594 2.7147 3.5065 17 6 3.9854 0.8382 4.4769 18 8 4.2172 1.4827 5.7311 19 6 1.7190 1.8671 4.2425 20 6 0.8238 2.7105 3.3305 21 6 0.7435 2.0514 1.9516 22 1 0.3097 1.0563 2.0495 23 6 -0.1341 2.9015 1.0306 24 1 -0.3634 0.3511 0.9659 25 1 -0.3634 0.6608 -0.7870 26 1 -0.3634 -1.0120 -0.1788 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 4.9431 0.8600 -3.3638 30 1 2.5120 0.1082 2.3109 31 1 3.9382 1.0129 1.7492 32 1 3.4850 -0.1154 4.6454 33 1 4.9377 0.6652 3.9757 34 1 4.7713 0.9735 6.3383 35 1 1.2781 0.8787 4.3728 36 1 1.8142 2.3544 5.2128 37 1 -0.1754 2.7763 3.7611 38 1 1.2444 3.7113 3.2322 39 1 -0.2374 2.4041 0.0663 40 1 -1.1183 3.0279 1.4816 41 1 0.3284 3.8782 0.8879 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688730066.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:51 Heat of formation + Delta-G solvation = -46.561347 kcal Electronic energy + Delta-G solvation = -19173.393760 eV Core-core repulsion = 16474.267882 eV Total energy + Delta-G solvation = -2699.125877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.45327 -36.90286 -34.69248 -32.67168 -31.80130 -30.71954 -28.10304 -26.99882 -24.11310 -23.37527 -22.43086 -20.69054 -19.76477 -18.72034 -17.30903 -16.56254 -15.62162 -14.99158 -14.59512 -14.50045 -13.88510 -13.57796 -13.41218 -12.90558 -12.74374 -12.42366 -12.25202 -11.84536 -11.71933 -11.44256 -11.39970 -11.05780 -10.96050 -10.68275 -10.55472 -10.43557 -10.22783 -10.05255 -9.80865 -9.73898 -9.46196 -9.29434 -8.95056 -8.43864 -7.16955 -6.04293 -4.00562 3.29708 3.39822 3.42455 4.29849 4.45124 4.87346 5.11332 5.21901 5.23767 5.29731 5.49398 5.64983 5.68438 5.73548 5.87180 5.88913 5.97189 6.00431 6.06241 6.10706 6.13201 6.18997 6.36017 6.37352 6.49892 6.56259 6.58598 6.63704 6.74625 6.81148 6.83682 6.91515 7.03670 7.33767 7.67746 7.73209 8.05032 8.21064 8.71289 9.04252 9.59559 11.08327 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.008655 C = 0.007185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.045485 B = 3234.499383 C = 3896.189562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.158 4.158 3 C 0.187 3.813 4 H 0.044 0.956 5 C -0.503 4.503 6 H 0.079 0.921 7 C 0.072 3.928 8 N -0.900 5.900 9 Si 0.854 3.146 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.241 1.241 13 N -0.513 5.513 14 C 0.068 3.932 15 C -0.086 4.086 16 H 0.082 0.918 17 C 0.081 3.919 18 O -0.574 6.574 19 C -0.107 4.107 20 C -0.111 4.111 21 C 0.068 3.932 22 H 0.044 0.956 23 C -0.151 4.151 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.035 0.965 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.262 0.738 30 H 0.026 0.974 31 H 0.090 0.910 32 H 0.040 0.960 33 H 0.048 0.952 34 H 0.373 0.627 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.159 -1.248 11.543 13.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.198 4.198 3 C 0.080 3.920 4 H 0.062 0.938 5 C -0.541 4.541 6 H 0.097 0.903 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.681 3.319 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.165 1.165 13 N -0.237 5.237 14 C -0.060 4.060 15 C -0.105 4.105 16 H 0.101 0.899 17 C 0.003 3.997 18 O -0.379 6.379 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.040 4.040 22 H 0.062 0.938 23 C -0.208 4.208 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.219 0.781 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.237 -0.346 11.074 13.233 hybrid contribution -0.627 -1.520 -0.610 1.754 sum -7.864 -1.867 10.464 13.222 Atomic orbital electron populations 1.22393 0.98375 1.00074 1.01313 1.22680 0.93373 1.02260 1.01471 1.19797 0.97798 0.88944 0.85458 0.93809 1.20978 0.92159 1.45921 0.95066 0.90289 1.24887 0.95366 0.94808 0.97926 1.69916 1.20654 1.48985 1.14267 0.87365 0.85378 0.78035 0.81095 1.20889 1.21679 1.16468 1.62060 1.08111 1.50742 1.02776 1.21941 0.99627 0.93343 0.91065 1.21214 0.94959 1.00262 0.94027 0.89931 1.22226 0.98578 0.94809 0.84093 1.86480 1.74130 1.49484 1.27771 1.21522 0.95044 0.99492 0.98418 1.21640 0.98588 0.99933 0.94730 1.21846 0.90918 0.97535 0.93714 0.93813 1.22006 0.97899 1.00928 0.99966 0.92289 0.92956 0.94624 0.92057 0.92891 0.92821 0.95635 0.89196 0.94127 0.93365 0.78124 0.93123 0.91971 0.92617 0.91429 0.91816 0.93463 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 7.88 37.16 0.29 -2.65 16 2 C -0.16 -3.32 4.19 -26.74 -0.11 -3.43 16 3 C 0.19 4.24 1.31 -68.87 -0.09 4.15 16 4 H 0.04 1.03 4.43 -51.93 -0.23 0.80 16 5 C -0.50 -13.70 8.45 -34.44 -0.29 -13.99 16 6 H 0.08 2.36 6.85 -52.49 -0.36 2.00 16 7 C 0.07 2.02 5.29 -17.82 -0.09 1.92 16 8 N -0.90 -27.19 13.96 55.43 0.77 -26.41 16 9 Si 0.85 20.67 25.67 -169.99 -4.36 16.30 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.24 -5.33 3.83 56.52 0.22 -5.11 16 13 N -0.51 -10.34 4.46 -220.14 -0.98 -11.32 16 14 C 0.07 1.29 4.04 -3.83 -0.02 1.27 16 15 C -0.09 -1.38 2.59 -90.54 -0.23 -1.62 16 16 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 17 C 0.08 1.11 6.43 37.16 0.24 1.35 16 18 O -0.57 -7.46 13.25 -35.23 -0.47 -7.92 16 19 C -0.11 -1.58 5.16 -26.61 -0.14 -1.71 16 20 C -0.11 -1.66 5.37 -26.65 -0.14 -1.80 16 21 C 0.07 1.16 1.76 -67.72 -0.12 1.04 16 22 H 0.04 0.75 5.02 -51.93 -0.26 0.49 16 23 C -0.15 -2.42 8.10 37.16 0.30 -2.12 16 24 H 0.06 0.97 4.47 -51.93 -0.23 0.73 16 25 H 0.05 0.95 5.79 -51.93 -0.30 0.65 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.39 5.27 -51.93 -0.27 1.12 16 28 H 0.05 1.08 5.52 -51.93 -0.29 0.79 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.03 0.47 6.12 -51.93 -0.32 0.16 16 31 H 0.09 1.92 6.31 -51.93 -0.33 1.59 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.37 3.00 9.12 45.56 0.42 3.41 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.09 4.28 -51.93 -0.22 0.87 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 288.62 15.07 4.35 4.35 Total: -1.00 -30.10 288.62 -7.03 -37.13 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.93 Total: 5.45 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -0.40 Total: -17.58 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.21 Total: -37.73 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.47 Total: -7.92 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.36 Total: 16.30 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.10 -7.03 -37.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688730066.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.432 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds