Wall clock time and date at job start Sun Mar 29 2020 23:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47441 * 2 1 4 4 H 1.09001 * 109.47026 * 325.10916 * 3 2 1 5 5 C 1.50695 * 109.47302 * 205.10349 * 3 2 1 6 6 H 1.08000 * 120.00350 * 246.09124 * 5 3 2 7 7 C 1.37882 * 119.99985 * 66.09930 * 5 3 2 8 8 N 1.31515 * 119.99786 * 187.72487 * 7 5 3 9 9 Si 1.86798 * 119.99895 * 7.71711 * 7 5 3 10 10 H 1.48504 * 109.47113 * 95.25716 * 9 7 5 11 11 H 1.48497 * 109.47361 * 215.25474 * 9 7 5 12 12 H 1.48504 * 109.47251 * 335.25490 * 9 7 5 13 13 N 1.46899 * 109.46742 * 85.10332 * 3 2 1 14 14 C 1.46854 * 110.99909 * 58.08294 * 13 3 2 15 15 C 1.53039 * 109.51935 * 174.15923 * 14 13 3 16 16 H 1.09000 * 109.50561 * 299.23247 * 15 14 13 17 17 C 1.53001 * 109.49865 * 179.12115 * 15 14 13 18 18 O 1.42900 * 109.46968 * 175.00094 * 17 15 14 19 19 C 1.53116 * 109.28206 * 59.17957 * 15 14 13 20 20 C 1.53119 * 109.16082 * 302.34217 * 19 15 14 21 21 C 1.46847 * 111.00402 * 293.87362 * 13 3 2 22 22 H 1.08996 * 109.46275 * 65.82456 * 21 13 3 23 23 C 1.53005 * 109.45843 * 305.85668 * 21 13 3 24 24 H 1.09006 * 109.47169 * 289.97700 * 1 2 3 25 25 H 1.08998 * 109.47336 * 49.97945 * 1 2 3 26 26 H 1.09004 * 109.47284 * 169.98276 * 1 2 3 27 27 H 1.09003 * 109.46725 * 240.00424 * 2 1 3 28 28 H 1.08996 * 109.47379 * 120.00637 * 2 1 3 29 29 H 0.96998 * 119.99615 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.45916 * 294.17481 * 14 13 3 31 31 H 1.08998 * 109.46216 * 54.15567 * 14 13 3 32 32 H 1.09003 * 109.46997 * 294.99811 * 17 15 14 33 33 H 1.09000 * 109.47514 * 54.99805 * 17 15 14 34 34 H 0.96700 * 113.99816 * 180.02562 * 18 17 15 35 35 H 1.09004 * 109.51935 * 62.24509 * 19 15 14 36 36 H 1.08994 * 109.52421 * 182.37403 * 19 15 14 37 37 H 1.09002 * 109.50542 * 177.58997 * 20 19 15 38 38 H 1.08999 * 109.50345 * 297.67719 * 20 19 15 39 39 H 1.08995 * 109.47388 * 63.11245 * 23 21 13 40 40 H 1.08997 * 109.46652 * 183.11938 * 23 21 13 41 41 H 1.08999 * 109.47010 * 303.11343 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3664 2.0660 -0.5878 5 6 3.4204 1.4871 -0.6028 6 1 4.2684 1.7573 0.0091 7 6 3.6009 1.1833 -1.9355 8 7 4.8162 1.0734 -2.4261 9 14 2.1194 0.9276 -3.0441 10 1 1.8024 2.1966 -3.7473 11 1 2.4245 -0.1286 -4.0424 12 1 0.9534 0.5115 -2.2240 13 7 2.0918 1.9434 1.3800 14 6 2.9562 1.0989 2.2143 15 6 3.1025 1.7296 3.6010 16 1 3.5594 2.7147 3.5065 17 6 3.9854 0.8382 4.4769 18 8 4.2172 1.4827 5.7311 19 6 1.7190 1.8671 4.2425 20 6 0.8238 2.7105 3.3305 21 6 0.7435 2.0514 1.9516 22 1 0.3097 1.0563 2.0495 23 6 -0.1341 2.9015 1.0306 24 1 -0.3634 0.3511 0.9659 25 1 -0.3634 0.6608 -0.7870 26 1 -0.3634 -1.0120 -0.1788 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 4.9431 0.8600 -3.3638 30 1 2.5120 0.1082 2.3109 31 1 3.9382 1.0129 1.7492 32 1 3.4850 -0.1154 4.6454 33 1 4.9377 0.6652 3.9757 34 1 4.7713 0.9735 6.3383 35 1 1.2781 0.8787 4.3728 36 1 1.8142 2.3544 5.2128 37 1 -0.1754 2.7763 3.7611 38 1 1.2444 3.7113 3.2322 39 1 -0.2374 2.4041 0.0663 40 1 -1.1183 3.0279 1.4816 41 1 0.3284 3.8782 0.8879 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688730066.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:51 Heat of formation + Delta-G solvation = -69.740623 kcal Electronic energy + Delta-G solvation = -19174.398888 eV Core-core repulsion = 16474.267882 eV Total energy + Delta-G solvation = -2700.131006 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90870 -38.08433 -36.15161 -34.35793 -33.49697 -32.19221 -29.51389 -28.65927 -25.63547 -24.69499 -24.06111 -22.14946 -21.17239 -20.22751 -18.85358 -18.10473 -17.26835 -16.39851 -16.07870 -15.89686 -15.37720 -14.99831 -14.83672 -14.63581 -14.25818 -13.87209 -13.55777 -13.32902 -13.15418 -12.98706 -12.83153 -12.60137 -12.34983 -12.34045 -12.14171 -12.07170 -11.55693 -11.36391 -11.32194 -11.25128 -10.92524 -10.89905 -10.66845 -10.53643 -8.73238 -8.23417 -6.23751 1.35808 1.40078 1.50049 2.39593 3.05170 3.14543 3.61725 3.85780 3.98093 4.02919 4.25780 4.26892 4.41443 4.43284 4.49677 4.53580 4.58937 4.65502 4.71462 4.78972 4.85734 4.96559 5.01809 5.07577 5.12376 5.16787 5.17747 5.24592 5.26427 5.38564 5.45340 5.46379 5.56647 5.68270 5.75625 6.15176 6.55565 6.82183 6.86583 6.94275 7.40804 8.92783 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.008655 C = 0.007185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.045485 B = 3234.499383 C = 3896.189562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.156 4.156 3 C 0.194 3.806 4 H 0.043 0.957 5 C -0.502 4.502 6 H 0.033 0.967 7 C 0.011 3.989 8 N -0.953 5.953 9 Si 0.919 3.081 10 H -0.284 1.284 11 H -0.294 1.294 12 H -0.206 1.206 13 N -0.533 5.533 14 C 0.076 3.924 15 C -0.083 4.083 16 H 0.056 0.944 17 C 0.087 3.913 18 O -0.585 6.585 19 C -0.100 4.100 20 C -0.107 4.107 21 C 0.066 3.934 22 H 0.053 0.947 23 C -0.150 4.150 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.262 0.738 30 H 0.033 0.967 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.396 0.604 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.459 -1.876 13.088 16.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.196 4.196 3 C 0.086 3.914 4 H 0.061 0.939 5 C -0.540 4.540 6 H 0.051 0.949 7 C -0.185 4.185 8 N -0.594 5.594 9 Si 0.743 3.257 10 H -0.210 1.210 11 H -0.221 1.221 12 H -0.128 1.128 13 N -0.257 5.257 14 C -0.052 4.052 15 C -0.102 4.102 16 H 0.075 0.925 17 C 0.009 3.991 18 O -0.393 6.393 19 C -0.137 4.137 20 C -0.145 4.145 21 C -0.042 4.042 22 H 0.071 0.929 23 C -0.207 4.207 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.245 0.755 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.547 -0.977 12.667 16.512 hybrid contribution 0.525 -1.274 -0.980 1.691 sum -10.022 -2.250 11.687 15.559 Atomic orbital electron populations 1.22316 0.95189 1.01512 1.02478 1.22530 0.96126 1.00250 1.00661 1.19569 0.94557 0.90369 0.86907 0.93947 1.21278 0.93496 1.44406 0.94831 0.94916 1.25760 0.98280 0.94857 0.99647 1.70083 1.23346 1.51309 1.14621 0.86346 0.82785 0.77622 0.78948 1.21023 1.22084 1.12758 1.61967 1.10664 1.51062 1.02021 1.21783 0.97400 0.93904 0.92103 1.21118 0.96837 0.99099 0.93134 0.92504 1.22052 0.97967 0.94828 0.84235 1.86414 1.74885 1.50377 1.27644 1.21475 0.93569 1.00290 0.98403 1.21639 1.00270 0.98979 0.93608 1.21992 0.88887 0.98424 0.94848 0.92932 1.22010 0.99304 0.99830 0.99550 0.90434 0.92955 0.92623 0.94120 0.92657 0.92961 0.94936 0.93322 0.92262 0.94136 0.75484 0.91783 0.91136 0.89514 0.92636 0.92849 0.90112 0.93263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.01 7.88 71.98 0.57 -4.44 16 2 C -0.16 -6.28 4.19 30.59 0.13 -6.15 16 3 C 0.19 8.74 1.31 44.17 0.06 8.80 16 4 H 0.04 1.94 4.43 -2.39 -0.01 1.93 16 5 C -0.50 -28.49 8.45 25.60 0.22 -28.28 16 6 H 0.03 2.11 6.85 -2.91 -0.02 2.09 16 7 C 0.01 0.63 5.29 84.66 0.45 1.08 16 8 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 9 Si 0.92 43.15 25.67 68.60 1.76 44.91 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 11 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.21 -8.39 3.83 99.48 0.38 -8.01 16 13 N -0.53 -21.33 4.46 -850.39 -3.79 -25.12 16 14 C 0.08 2.90 4.04 86.33 0.35 3.25 16 15 C -0.08 -2.63 2.59 -10.74 -0.03 -2.66 16 16 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 17 C 0.09 2.31 6.43 71.98 0.46 2.77 16 18 O -0.59 -14.09 13.25 -148.98 -1.97 -16.06 16 19 C -0.10 -2.65 5.16 30.67 0.16 -2.49 16 20 C -0.11 -2.86 5.37 30.65 0.16 -2.70 16 21 C 0.07 2.06 1.76 44.94 0.08 2.14 16 22 H 0.05 1.58 5.02 -2.39 -0.01 1.56 16 23 C -0.15 -4.35 8.10 71.98 0.58 -3.76 16 24 H 0.08 2.17 4.47 -2.38 -0.01 2.16 16 25 H 0.05 1.67 5.79 -2.39 -0.01 1.65 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.04 1.79 5.27 -2.39 -0.01 1.77 16 28 H 0.05 2.17 5.52 -2.39 -0.01 2.16 16 29 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.03 1.18 6.12 -2.39 -0.01 1.16 16 31 H 0.05 2.22 6.31 -2.39 -0.02 2.20 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.40 5.46 9.12 -74.06 -0.68 4.79 16 35 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.07 1.80 7.90 -2.39 -0.02 1.78 16 37 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.05 1.66 4.28 -2.39 -0.01 1.65 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -68.02 288.62 -0.50 -68.52 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.02 Total: 20.17 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 3.19 Total: -32.44 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -3.49 Total: -85.10 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -1.97 Total: -16.06 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.76 Total: 44.91 kcal Total: -68.02 -0.50 -68.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688730066.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.225 kcal (2) G-P(sol) polarization free energy of solvation -68.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds