Wall clock time and date at job start Sun Mar 29 2020 23:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47026 * 2 1 4 4 H 1.09005 * 109.46872 * 300.58663 * 3 2 1 5 5 C 1.50702 * 109.47116 * 180.58693 * 3 2 1 6 6 H 1.07996 * 119.99645 * 241.08307 * 5 3 2 7 7 C 1.37877 * 119.99983 * 61.08962 * 5 3 2 8 8 N 1.31515 * 120.00088 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00028 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47151 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47208 * 299.99730 * 9 7 5 12 12 H 1.48499 * 109.46950 * 59.99650 * 9 7 5 13 13 N 1.46898 * 109.47525 * 60.58432 * 3 2 1 14 14 C 1.46842 * 111.00064 * 169.46756 * 13 3 2 15 15 C 1.53035 * 109.52363 * 174.16324 * 14 13 3 16 16 H 1.09002 * 109.53295 * 299.21390 * 15 14 13 17 17 C 1.53000 * 109.50472 * 179.11559 * 15 14 13 18 18 O 1.42901 * 109.47016 * 175.19385 * 17 15 14 19 19 C 1.53121 * 109.28262 * 59.17366 * 15 14 13 20 20 C 1.53122 * 109.15874 * 302.35115 * 19 15 14 21 21 C 1.46841 * 110.99882 * 45.25144 * 13 3 2 22 22 H 1.09001 * 109.46566 * 305.85054 * 21 13 3 23 23 C 1.53002 * 109.46220 * 65.82389 * 21 13 3 24 24 H 1.09000 * 109.47533 * 55.04534 * 1 2 3 25 25 H 1.09000 * 109.47374 * 175.04866 * 1 2 3 26 26 H 1.09001 * 109.47282 * 295.04237 * 1 2 3 27 27 H 1.08993 * 109.47019 * 239.99965 * 2 1 3 28 28 H 1.09004 * 109.47065 * 119.99735 * 2 1 3 29 29 H 0.96996 * 120.00052 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.45865 * 294.16908 * 14 13 3 31 31 H 1.08993 * 109.46828 * 54.14272 * 14 13 3 32 32 H 1.08999 * 109.47074 * 295.19655 * 17 15 14 33 33 H 1.09000 * 109.47012 * 55.19657 * 17 15 14 34 34 H 0.96704 * 113.99637 * 180.02562 * 18 17 15 35 35 H 1.09000 * 109.52578 * 182.44399 * 19 15 14 36 36 H 1.09004 * 109.57107 * 62.27991 * 19 15 14 37 37 H 1.08997 * 109.49970 * 297.70740 * 20 19 15 38 38 H 1.09001 * 109.49967 * 177.59300 * 20 19 15 39 39 H 1.09005 * 109.46606 * 59.99982 * 23 21 13 40 40 H 1.09000 * 109.47619 * 179.97438 * 23 21 13 41 41 H 1.08998 * 109.47210 * 300.00026 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6680 1.9594 -0.8847 5 6 3.5469 1.4426 -0.0146 6 1 4.0947 1.8921 0.8004 7 6 4.2262 0.8689 -1.0684 8 7 3.5590 0.3212 -2.0606 9 14 6.0941 0.8683 -1.0861 10 1 6.5772 0.1953 -2.3185 11 1 6.5898 2.2679 -1.0591 12 1 6.6001 0.1409 0.1056 13 7 1.5619 2.1310 1.2064 14 6 2.2281 3.4293 1.3702 15 6 1.6041 4.1791 2.5494 16 1 0.5456 4.3502 2.3536 17 6 2.3132 5.5223 2.7335 18 8 1.6589 6.2694 3.7611 19 6 1.7596 3.3405 3.8211 20 6 1.0994 1.9756 3.6069 21 6 1.7380 1.2898 2.3970 22 1 1.2602 0.3239 2.2332 23 6 3.2312 1.0820 2.6581 24 1 -0.3634 0.5888 -0.8423 25 1 -0.3634 -1.0238 -0.0887 26 1 -0.3634 0.4350 0.9311 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.0369 -0.0827 -2.8018 30 1 3.2896 3.2713 1.5611 31 1 2.1064 4.0174 0.4606 32 1 3.3518 5.3493 3.0153 33 1 2.2788 6.0824 1.7991 34 1 2.0559 7.1346 3.9318 35 1 1.2783 3.8510 4.6553 36 1 2.8184 3.2025 4.0403 37 1 0.0329 2.1115 3.4273 38 1 1.2440 1.3583 4.4935 39 1 3.7092 2.0479 2.8216 40 1 3.3621 0.4579 3.5421 41 1 3.6860 0.5926 1.7969 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688730068.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:53 Heat of formation + Delta-G solvation = -50.639751 kcal Electronic energy + Delta-G solvation = -19294.734083 eV Core-core repulsion = 16595.431353 eV Total energy + Delta-G solvation = -2699.302730 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.41266 -36.79983 -34.55508 -32.09510 -31.41242 -30.65211 -27.35118 -26.61772 -24.69659 -23.29322 -22.01138 -21.15443 -19.22727 -17.80614 -17.03948 -16.50968 -15.71809 -14.88086 -14.42998 -14.15275 -13.92154 -13.21621 -13.09625 -12.65223 -12.51241 -12.17755 -11.93597 -11.80311 -11.36675 -11.24808 -11.15243 -10.91387 -10.71448 -10.62271 -10.33732 -10.17643 -10.07013 -9.84557 -9.76685 -9.55055 -9.42012 -9.11576 -8.76346 -8.31662 -7.04520 -5.98311 -4.08045 3.25915 3.31898 3.34116 4.36490 4.39010 5.08999 5.23773 5.26768 5.36607 5.48119 5.65356 5.81746 5.91538 6.00346 6.15701 6.25142 6.27520 6.36601 6.39898 6.43439 6.45546 6.52425 6.62180 6.66000 6.69911 6.82907 6.91320 7.04765 7.07147 7.21223 7.32226 7.47712 7.68600 7.73611 7.77292 8.03434 8.19804 8.40718 8.50675 8.99232 9.55256 11.00694 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022205 B = 0.008973 C = 0.007505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.701002 B = 3119.713758 C = 3729.820050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.214 3.786 4 H 0.039 0.961 5 C -0.544 4.544 6 H 0.071 0.929 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.882 3.118 10 H -0.288 1.288 11 H -0.278 1.278 12 H -0.278 1.278 13 N -0.527 5.527 14 C 0.071 3.929 15 C -0.085 4.085 16 H 0.076 0.924 17 C 0.081 3.919 18 O -0.574 6.574 19 C -0.106 4.106 20 C -0.112 4.112 21 C 0.084 3.916 22 H 0.081 0.919 23 C -0.199 4.199 24 H 0.041 0.959 25 H 0.025 0.975 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.038 0.962 29 H 0.261 0.739 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.372 0.628 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.046 0.954 40 H 0.027 0.973 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.265 5.536 8.301 10.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C 0.108 3.892 4 H 0.057 0.943 5 C -0.583 4.583 6 H 0.088 0.912 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.710 3.290 10 H -0.213 1.213 11 H -0.204 1.204 12 H -0.203 1.203 13 N -0.251 5.251 14 C -0.058 4.058 15 C -0.104 4.104 16 H 0.094 0.906 17 C 0.003 3.997 18 O -0.379 6.379 19 C -0.143 4.143 20 C -0.150 4.150 21 C -0.025 4.025 22 H 0.099 0.901 23 C -0.257 4.257 24 H 0.060 0.940 25 H 0.044 0.956 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.218 0.782 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.135 4.975 8.049 9.969 hybrid contribution 2.426 0.333 -0.045 2.449 sum -0.709 5.308 8.004 9.631 Atomic orbital electron populations 1.21758 0.98822 0.98418 1.00772 1.21722 0.92208 0.99442 1.02165 1.19274 0.92375 0.90453 0.87079 0.94289 1.22009 0.92799 1.37533 1.05968 0.91155 1.24934 0.97754 0.95408 0.95475 1.69878 1.35103 1.37877 1.09403 0.86817 0.86573 0.78191 0.77394 1.21321 1.20407 1.20333 1.62511 1.56366 1.02760 1.03433 1.21771 0.96924 0.91466 0.95595 1.21225 1.00789 0.92104 0.96284 0.90586 1.22248 0.95166 0.92823 0.89485 1.86489 1.59462 1.33419 1.58514 1.21513 1.00348 0.95560 0.96920 1.21646 0.99953 0.95873 0.97561 1.21554 0.94311 0.96762 0.89889 0.90146 1.23068 0.98859 1.01106 1.02697 0.93974 0.95598 0.93474 0.89256 0.94312 0.92905 0.93599 0.91922 0.93996 0.93768 0.78248 0.92565 0.92617 0.92152 0.92894 0.93553 0.95424 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.46 37.16 0.35 -2.45 16 2 C -0.12 -2.68 4.64 -26.73 -0.12 -2.81 16 3 C 0.21 5.09 2.00 -68.86 -0.14 4.95 16 4 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 5 C -0.54 -13.71 5.30 -34.44 -0.18 -13.90 16 6 H 0.07 1.75 4.09 -52.49 -0.21 1.54 16 7 C 0.07 1.76 5.31 -17.82 -0.09 1.66 16 8 N -0.88 -24.26 11.39 55.43 0.63 -23.63 16 9 Si 0.88 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.53 -10.85 4.21 -220.15 -0.93 -11.78 16 14 C 0.07 1.37 3.90 -3.84 -0.01 1.35 16 15 C -0.09 -1.40 2.59 -90.54 -0.23 -1.64 16 16 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 17 C 0.08 1.13 6.43 37.16 0.24 1.37 16 18 O -0.57 -7.59 13.25 -35.23 -0.47 -8.05 16 19 C -0.11 -1.69 4.85 -26.61 -0.13 -1.82 16 20 C -0.11 -1.85 5.61 -26.65 -0.15 -2.00 16 21 C 0.08 1.59 2.07 -67.73 -0.14 1.45 16 22 H 0.08 1.58 4.98 -51.93 -0.26 1.33 16 23 C -0.20 -3.88 7.00 37.16 0.26 -3.62 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.90 6.82 -51.93 -0.35 0.55 16 27 H 0.09 2.30 6.14 -51.93 -0.32 1.98 16 28 H 0.04 0.87 5.74 -51.93 -0.30 0.58 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.05 0.94 4.60 -51.93 -0.24 0.70 16 31 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.37 3.06 9.12 45.56 0.42 3.47 16 35 H 0.06 0.87 7.90 -51.93 -0.41 0.46 16 36 H 0.06 0.90 6.56 -51.93 -0.34 0.56 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.89 4.63 -51.93 -0.24 0.65 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.11 2.42 4.58 -51.93 -0.24 2.18 16 LS Contribution 293.73 15.07 4.43 4.43 Total: -1.00 -27.10 293.73 -7.57 -34.67 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.86 Total: 6.27 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -0.36 Total: -17.45 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.30 Total: -35.41 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.47 Total: -8.05 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.10 -7.57 -34.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688730068.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.972 kcal (2) G-P(sol) polarization free energy of solvation -27.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds