Wall clock time and date at job start Sun Mar 29 2020 23:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46970 * 2 1 4 4 H 1.09008 * 109.46987 * 303.15490 * 3 2 1 5 5 C 1.50701 * 109.46844 * 183.16016 * 3 2 1 6 6 H 1.07996 * 119.99634 * 245.23009 * 5 3 2 7 7 C 1.37873 * 120.00469 * 65.23435 * 5 3 2 8 8 N 1.31520 * 119.99883 * 5.48245 * 7 5 3 9 9 Si 1.86797 * 120.00361 * 185.48662 * 7 5 3 10 10 H 1.48509 * 109.47080 * 94.99350 * 9 7 5 11 11 H 1.48498 * 109.47555 * 214.99445 * 9 7 5 12 12 H 1.48500 * 109.46893 * 334.99949 * 9 7 5 13 13 N 1.46891 * 109.46903 * 63.15861 * 3 2 1 14 14 C 1.46842 * 110.99865 * 62.91344 * 13 3 2 15 15 C 1.53046 * 109.52403 * 185.80016 * 14 13 3 16 16 H 1.09000 * 109.49953 * 60.83840 * 15 14 13 17 17 C 1.52995 * 109.50250 * 180.91979 * 15 14 13 18 18 O 1.42900 * 109.47104 * 184.91812 * 17 15 14 19 19 C 1.53118 * 109.30830 * 300.87911 * 15 14 13 20 20 C 1.53124 * 109.16046 * 57.63601 * 19 15 14 21 21 C 1.46850 * 110.99764 * 187.16286 * 13 3 2 22 22 H 1.08998 * 109.45535 * 294.17087 * 21 13 3 23 23 C 1.53005 * 109.46444 * 54.14367 * 21 13 3 24 24 H 1.09006 * 109.47012 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46981 * 299.99568 * 1 2 3 26 26 H 1.08999 * 109.47479 * 60.00073 * 1 2 3 27 27 H 1.09003 * 109.46981 * 240.00432 * 2 1 3 28 28 H 1.08999 * 109.47479 * 119.99927 * 2 1 3 29 29 H 0.97000 * 119.99980 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.43048 * 65.80729 * 14 13 3 31 31 H 1.08999 * 109.49563 * 305.83086 * 14 13 3 32 32 H 1.08998 * 109.47286 * 64.91826 * 17 15 14 33 33 H 1.09002 * 109.47084 * 304.91852 * 17 15 14 34 34 H 0.96701 * 114.00392 * 180.02562 * 18 17 15 35 35 H 1.08999 * 109.52246 * 177.53943 * 19 15 14 36 36 H 1.09002 * 109.52230 * 297.73405 * 19 15 14 37 37 H 1.08995 * 109.50215 * 62.28488 * 20 19 15 38 38 H 1.09003 * 109.49930 * 182.36779 * 20 19 15 39 39 H 1.08998 * 109.46932 * 173.65331 * 23 21 13 40 40 H 1.09002 * 109.46730 * 293.65856 * 23 21 13 41 41 H 1.09003 * 109.46986 * 53.65681 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6311 1.9725 -0.8604 5 6 3.5449 1.4432 -0.0783 6 1 4.1285 1.8197 0.7488 7 6 4.1769 0.9634 -1.2059 8 7 3.4685 0.6057 -2.2547 9 14 6.0390 0.8212 -1.2438 10 1 6.4380 -0.5583 -0.8650 11 1 6.5306 1.1202 -2.6128 12 1 6.6290 1.7883 -0.2837 13 7 1.6136 2.1126 1.2357 14 6 2.2029 1.4660 2.4151 15 6 1.6259 2.0954 3.6853 16 1 0.5463 1.9466 3.7070 17 6 2.2571 1.4371 4.9137 18 8 1.6364 1.9433 6.0971 19 6 1.9355 3.5949 3.6929 20 6 1.3518 4.2351 2.4303 21 6 1.9375 3.5444 1.1967 22 1 3.0200 3.6716 1.1888 23 6 1.3418 4.1676 -0.0674 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9131 0.2678 -3.0478 30 1 3.2842 1.6026 2.4011 31 1 1.9711 0.4011 2.4000 32 1 3.3235 1.6614 4.9384 33 1 2.1140 0.3578 4.8614 34 1 1.9881 1.5692 6.9165 35 1 1.4885 4.0546 4.5744 36 1 3.0151 3.7438 3.7111 37 1 0.2679 4.1199 2.4317 38 1 1.6052 5.2950 2.4094 39 1 1.4841 5.2479 -0.0416 40 1 1.8406 3.7561 -0.9450 41 1 0.2764 3.9425 -0.1161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688730069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:55 Heat of formation + Delta-G solvation = -67.785478 kcal Electronic energy + Delta-G solvation = -19072.113813 eV Core-core repulsion = 16372.067588 eV Total energy + Delta-G solvation = -2700.046225 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.00143 -36.71218 -34.51631 -32.41640 -31.85489 -30.32152 -27.65187 -26.50947 -24.00617 -23.38870 -22.49793 -20.24132 -19.42718 -18.76637 -17.21875 -16.03720 -15.33457 -14.87017 -14.42938 -14.29432 -13.78010 -13.48203 -12.96768 -12.93518 -12.68890 -12.42084 -11.75483 -11.61538 -11.27763 -11.19921 -11.14872 -10.98489 -10.90305 -10.62313 -10.37050 -10.20943 -10.08231 -9.92802 -9.77213 -9.66414 -9.50525 -9.21918 -8.96999 -8.32437 -7.04468 -5.99301 -4.09476 3.25714 3.33890 3.36188 4.35160 4.40621 5.04078 5.22235 5.26878 5.34544 5.43674 5.59936 5.79336 5.90967 5.94258 6.15395 6.16804 6.29468 6.31848 6.33843 6.40896 6.44619 6.51093 6.56875 6.65189 6.66536 6.78708 6.87522 7.02991 7.08376 7.10867 7.20472 7.37108 7.65215 7.71993 7.74569 7.97718 8.20296 8.36986 8.51494 9.01785 9.57219 11.02080 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020961 B = 0.008281 C = 0.007850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.491845 B = 3380.452860 C = 3566.001982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.209 3.791 4 H 0.054 0.946 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.882 3.118 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.527 5.527 14 C 0.069 3.931 15 C -0.085 4.085 16 H 0.077 0.923 17 C 0.081 3.919 18 O -0.574 6.574 19 C -0.106 4.106 20 C -0.112 4.112 21 C 0.090 3.910 22 H 0.041 0.959 23 C -0.140 4.140 24 H 0.024 0.976 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.075 0.925 28 H 0.033 0.967 29 H 0.260 0.740 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.372 0.628 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.947 2.587 9.984 10.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C 0.103 3.897 4 H 0.072 0.928 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.710 3.290 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.252 5.252 14 C -0.059 4.059 15 C -0.104 4.104 16 H 0.095 0.905 17 C 0.003 3.997 18 O -0.379 6.379 19 C -0.144 4.144 20 C -0.150 4.150 21 C -0.019 4.019 22 H 0.059 0.941 23 C -0.198 4.198 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.218 0.782 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.786 2.822 9.357 10.481 hybrid contribution 2.453 -0.499 0.208 2.512 sum -1.333 2.323 9.565 9.933 Atomic orbital electron populations 1.21707 0.98605 0.98397 1.00878 1.21551 0.92522 0.99479 1.00912 1.19375 0.92730 0.90667 0.86943 0.92850 1.21732 0.92836 1.41800 1.01672 0.92712 1.24894 0.97599 0.95347 0.95440 1.69935 1.35049 1.43587 1.03752 0.86746 0.86641 0.78297 0.77303 1.20792 1.21265 1.20114 1.62350 1.58162 1.01125 1.03530 1.21815 0.96953 0.98255 0.88913 1.21228 1.01172 0.95310 0.92712 0.90452 1.22245 0.95641 0.96758 0.85079 1.86486 1.65261 1.70029 1.16100 1.21501 1.00055 0.95149 0.97671 1.21671 1.00670 0.98041 0.94583 1.21330 0.97590 0.89387 0.93560 0.94144 1.21814 1.00942 0.98373 0.98628 0.95691 0.93074 0.94117 0.90630 0.94796 0.92970 0.94555 0.91215 0.93966 0.93780 0.78221 0.92288 0.92990 0.91898 0.92770 0.94007 0.91269 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.78 37.16 0.36 -2.41 16 2 C -0.11 -2.45 5.10 -26.73 -0.14 -2.59 16 3 C 0.21 4.98 1.28 -68.87 -0.09 4.89 16 4 H 0.05 1.41 5.92 -51.92 -0.31 1.10 16 5 C -0.54 -14.14 7.14 -34.44 -0.25 -14.39 16 6 H 0.05 1.46 5.86 -52.49 -0.31 1.15 16 7 C 0.07 1.88 5.24 -17.82 -0.09 1.78 16 8 N -0.89 -24.66 11.95 55.43 0.66 -24.00 16 9 Si 0.88 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.53 -10.87 3.83 -220.13 -0.84 -11.71 16 14 C 0.07 1.33 4.08 -3.83 -0.02 1.31 16 15 C -0.09 -1.39 2.59 -90.54 -0.23 -1.63 16 16 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 17 C 0.08 1.12 6.43 37.15 0.24 1.36 16 18 O -0.57 -7.48 13.25 -35.23 -0.47 -7.95 16 19 C -0.11 -1.69 5.16 -26.61 -0.14 -1.82 16 20 C -0.11 -1.83 5.37 -26.65 -0.14 -1.97 16 21 C 0.09 1.75 2.14 -67.72 -0.14 1.60 16 22 H 0.04 0.88 7.21 -51.93 -0.37 0.50 16 23 C -0.14 -2.62 8.55 37.16 0.32 -2.30 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.95 6.65 -51.93 -0.35 1.61 16 28 H 0.03 0.76 6.20 -51.93 -0.32 0.44 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.04 0.76 6.43 -51.93 -0.33 0.43 16 31 H 0.07 1.36 6.04 -51.93 -0.31 1.05 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.37 3.00 9.12 45.56 0.42 3.41 16 35 H 0.06 0.90 7.90 -51.93 -0.41 0.49 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.48 6.56 -51.93 -0.34 1.14 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 308.07 15.07 4.64 4.64 Total: -1.00 -27.97 308.07 -7.75 -35.72 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.40 Total: 3.50 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -0.32 Total: -16.17 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.18 Total: -35.71 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.47 Total: -7.95 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.97 -7.75 -35.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688730069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.065 kcal (2) G-P(sol) polarization free energy of solvation -27.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds