Wall clock time and date at job start Sun Mar 29 2020 23:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46970 * 2 1 4 4 H 1.09008 * 109.46987 * 303.15490 * 3 2 1 5 5 C 1.50701 * 109.46844 * 183.16016 * 3 2 1 6 6 H 1.07996 * 119.99634 * 245.23009 * 5 3 2 7 7 C 1.37873 * 120.00469 * 65.23435 * 5 3 2 8 8 N 1.31520 * 119.99883 * 5.48245 * 7 5 3 9 9 Si 1.86797 * 120.00361 * 185.48662 * 7 5 3 10 10 H 1.48509 * 109.47080 * 94.99350 * 9 7 5 11 11 H 1.48498 * 109.47555 * 214.99445 * 9 7 5 12 12 H 1.48500 * 109.46893 * 334.99949 * 9 7 5 13 13 N 1.46891 * 109.46903 * 63.15861 * 3 2 1 14 14 C 1.46842 * 110.99865 * 62.91344 * 13 3 2 15 15 C 1.53046 * 109.52403 * 185.80016 * 14 13 3 16 16 H 1.09000 * 109.49953 * 60.83840 * 15 14 13 17 17 C 1.52995 * 109.50250 * 180.91979 * 15 14 13 18 18 O 1.42900 * 109.47104 * 184.91812 * 17 15 14 19 19 C 1.53118 * 109.30830 * 300.87911 * 15 14 13 20 20 C 1.53124 * 109.16046 * 57.63601 * 19 15 14 21 21 C 1.46850 * 110.99764 * 187.16286 * 13 3 2 22 22 H 1.08998 * 109.45535 * 294.17087 * 21 13 3 23 23 C 1.53005 * 109.46444 * 54.14367 * 21 13 3 24 24 H 1.09006 * 109.47012 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46981 * 299.99568 * 1 2 3 26 26 H 1.08999 * 109.47479 * 60.00073 * 1 2 3 27 27 H 1.09003 * 109.46981 * 240.00432 * 2 1 3 28 28 H 1.08999 * 109.47479 * 119.99927 * 2 1 3 29 29 H 0.97000 * 119.99980 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.43048 * 65.80729 * 14 13 3 31 31 H 1.08999 * 109.49563 * 305.83086 * 14 13 3 32 32 H 1.08998 * 109.47286 * 64.91826 * 17 15 14 33 33 H 1.09002 * 109.47084 * 304.91852 * 17 15 14 34 34 H 0.96701 * 114.00392 * 180.02562 * 18 17 15 35 35 H 1.08999 * 109.52246 * 177.53943 * 19 15 14 36 36 H 1.09002 * 109.52230 * 297.73405 * 19 15 14 37 37 H 1.08995 * 109.50215 * 62.28488 * 20 19 15 38 38 H 1.09003 * 109.49930 * 182.36779 * 20 19 15 39 39 H 1.08998 * 109.46932 * 173.65331 * 23 21 13 40 40 H 1.09002 * 109.46730 * 293.65856 * 23 21 13 41 41 H 1.09003 * 109.46986 * 53.65681 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6311 1.9725 -0.8604 5 6 3.5449 1.4432 -0.0783 6 1 4.1285 1.8197 0.7488 7 6 4.1769 0.9634 -1.2059 8 7 3.4685 0.6057 -2.2547 9 14 6.0390 0.8212 -1.2438 10 1 6.4380 -0.5583 -0.8650 11 1 6.5306 1.1202 -2.6128 12 1 6.6290 1.7883 -0.2837 13 7 1.6136 2.1126 1.2357 14 6 2.2029 1.4660 2.4151 15 6 1.6259 2.0954 3.6853 16 1 0.5463 1.9466 3.7070 17 6 2.2571 1.4371 4.9137 18 8 1.6364 1.9433 6.0971 19 6 1.9355 3.5949 3.6929 20 6 1.3518 4.2351 2.4303 21 6 1.9375 3.5444 1.1967 22 1 3.0200 3.6716 1.1888 23 6 1.3418 4.1676 -0.0674 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9131 0.2678 -3.0478 30 1 3.2842 1.6026 2.4011 31 1 1.9711 0.4011 2.4000 32 1 3.3235 1.6614 4.9384 33 1 2.1140 0.3578 4.8614 34 1 1.9881 1.5692 6.9165 35 1 1.4885 4.0546 4.5744 36 1 3.0151 3.7438 3.7111 37 1 0.2679 4.1199 2.4317 38 1 1.6052 5.2950 2.4094 39 1 1.4841 5.2479 -0.0416 40 1 1.8406 3.7561 -0.9450 41 1 0.2764 3.9425 -0.1161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688730069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:55 Heat of formation + Delta-G solvation = -86.407270 kcal Electronic energy + Delta-G solvation = -19072.921314 eV Core-core repulsion = 16372.067588 eV Total energy + Delta-G solvation = -2700.853726 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.52771 -37.90259 -36.13775 -33.90973 -33.74655 -31.93816 -29.03275 -28.39455 -25.65194 -24.87341 -24.09848 -21.74992 -20.95414 -20.49566 -18.46068 -17.82177 -17.03846 -16.34109 -15.91880 -15.88397 -15.15622 -15.04881 -14.67567 -14.52896 -14.26974 -13.76016 -13.33925 -13.14562 -13.05814 -12.96765 -12.68329 -12.64492 -12.50020 -12.32703 -12.05915 -11.74333 -11.60862 -11.50064 -11.47139 -11.18690 -11.00054 -10.80400 -10.63499 -10.35444 -8.84281 -8.02455 -6.21385 1.34428 1.37418 1.45102 2.40369 3.16289 3.19258 3.67724 3.92097 4.03493 4.09838 4.37633 4.48210 4.55906 4.60374 4.64087 4.70014 4.74426 4.79123 4.84174 4.88423 4.93277 5.01823 5.11224 5.16859 5.21615 5.29478 5.37868 5.40635 5.43542 5.47798 5.56128 5.59921 5.69523 5.83295 6.03263 6.28078 6.45465 6.77285 6.96894 7.02108 7.48429 8.94338 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020961 B = 0.008281 C = 0.007850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.491845 B = 3380.452860 C = 3566.001982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.216 3.784 4 H 0.024 0.976 5 C -0.545 4.545 6 H 0.045 0.955 7 C 0.024 3.976 8 N -0.912 5.912 9 Si 0.938 3.062 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.524 5.524 14 C 0.074 3.926 15 C -0.080 4.080 16 H 0.072 0.928 17 C 0.088 3.912 18 O -0.585 6.585 19 C -0.102 4.102 20 C -0.103 4.103 21 C 0.087 3.913 22 H 0.013 0.987 23 C -0.132 4.132 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.033 0.967 27 H 0.044 0.956 28 H 0.035 0.965 29 H 0.260 0.740 30 H 0.015 0.985 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.395 0.605 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.279 3.059 11.854 12.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.042 0.958 5 C -0.584 4.584 6 H 0.063 0.937 7 C -0.176 4.176 8 N -0.551 5.551 9 Si 0.765 3.235 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.248 5.248 14 C -0.054 4.054 15 C -0.099 4.099 16 H 0.091 0.909 17 C 0.009 3.991 18 O -0.393 6.393 19 C -0.139 4.139 20 C -0.141 4.141 21 C -0.022 4.022 22 H 0.031 0.969 23 C -0.190 4.190 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.033 0.967 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.245 0.755 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.115 3.294 11.261 12.433 hybrid contribution 2.546 -0.622 -0.342 2.643 sum -1.569 2.671 10.918 11.349 Atomic orbital electron populations 1.21563 0.96072 0.99799 1.00872 1.21412 0.94736 0.98512 0.99363 1.19126 0.91327 0.91067 0.87576 0.95813 1.21954 0.94240 1.41038 1.01161 0.93654 1.25541 1.01299 0.95443 0.95317 1.70045 1.36403 1.44523 1.04153 0.85862 0.82251 0.78267 0.77159 1.20316 1.21088 1.19962 1.62339 1.57836 1.01830 1.02791 1.21779 0.95709 0.98146 0.89793 1.21119 1.00730 0.95712 0.92329 0.90908 1.22048 0.95501 0.96896 0.84611 1.86414 1.65556 1.70438 1.16861 1.21473 0.99855 0.94750 0.97859 1.21610 1.00671 0.98843 0.92981 1.21426 0.96223 0.88936 0.95584 0.96932 1.21728 1.00626 0.99812 0.96805 0.93590 0.92249 0.94809 0.93746 0.94644 0.93073 0.96699 0.91836 0.93561 0.92944 0.75538 0.90822 0.93414 0.91371 0.90702 0.91325 0.94876 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 9.78 71.98 0.70 -4.25 16 2 C -0.10 -4.76 5.10 30.60 0.16 -4.60 16 3 C 0.22 10.55 1.28 44.17 0.06 10.61 16 4 H 0.02 1.32 5.92 -2.38 -0.01 1.30 16 5 C -0.54 -29.18 7.14 25.60 0.18 -29.00 16 6 H 0.05 2.47 5.86 -2.91 -0.02 2.46 16 7 C 0.02 1.31 5.24 84.65 0.44 1.75 16 8 N -0.91 -52.17 11.95 21.45 0.26 -51.92 16 9 Si 0.94 43.67 29.54 68.60 2.03 45.70 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 13 N -0.52 -21.61 3.83 -850.37 -3.26 -24.87 16 14 C 0.07 2.81 4.08 86.33 0.35 3.17 16 15 C -0.08 -2.46 2.59 -10.74 -0.03 -2.49 16 16 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 17 C 0.09 2.22 6.43 71.98 0.46 2.68 16 18 O -0.58 -13.37 13.25 -148.98 -1.97 -15.35 16 19 C -0.10 -3.00 5.16 30.67 0.16 -2.84 16 20 C -0.10 -3.15 5.37 30.65 0.16 -2.99 16 21 C 0.09 3.35 2.14 44.94 0.10 3.44 16 22 H 0.01 0.56 7.21 -2.39 -0.02 0.54 16 23 C -0.13 -4.93 8.55 71.98 0.62 -4.31 16 24 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.06 2.23 7.70 -2.39 -0.02 2.21 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.04 2.35 6.65 -2.39 -0.02 2.33 16 28 H 0.03 1.61 6.20 -2.39 -0.01 1.59 16 29 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 30 H 0.01 0.63 6.43 -2.39 -0.02 0.61 16 31 H 0.06 2.46 6.04 -2.39 -0.01 2.44 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.40 5.04 9.12 -74.06 -0.68 4.36 16 35 H 0.07 2.00 7.90 -2.39 -0.02 1.98 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.03 1.45 6.56 -2.39 -0.02 1.43 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -60.38 308.07 0.73 -59.65 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.32 Total: 15.62 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 3.37 Total: -28.83 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -3.00 Total: -76.79 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -1.97 Total: -15.35 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -60.38 0.73 -59.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688730069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.759 kcal (2) G-P(sol) polarization free energy of solvation -60.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds