Wall clock time and date at job start Sun Mar 29 2020 23:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46778 * 2 1 4 4 H 1.08990 * 109.47740 * 303.07499 * 3 2 1 5 5 C 1.50702 * 109.47135 * 183.07287 * 3 2 1 6 6 H 1.07997 * 120.00286 * 240.00783 * 5 3 2 7 7 C 1.37884 * 119.99800 * 59.99972 * 5 3 2 8 8 N 1.31516 * 119.99799 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00191 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.46835 * 90.00291 * 9 7 5 11 11 H 1.48495 * 109.46980 * 210.00549 * 9 7 5 12 12 H 1.48499 * 109.46929 * 330.00322 * 9 7 5 13 13 N 1.46905 * 109.46886 * 63.07726 * 3 2 1 14 14 C 1.47800 * 110.99453 * 189.87538 * 13 3 2 15 15 C 1.45872 * 112.91508 * 153.86524 * 14 13 3 16 16 C 1.54506 * 111.53029 * 61.36137 * 15 14 13 17 17 C 1.50511 * 108.82707 * 282.70331 * 16 15 14 18 18 H 1.08999 * 108.81009 * 331.34898 * 17 16 15 19 19 O 1.42898 * 108.80458 * 213.14375 * 17 16 15 20 20 C 1.42894 * 114.00333 * 86.55809 * 19 17 16 21 21 C 1.54301 * 112.96793 * 92.24879 * 17 16 15 22 22 C 1.44266 * 111.00007 * 67.89717 * 13 3 2 23 23 H 1.08993 * 109.47063 * 54.72648 * 1 2 3 24 24 H 1.08999 * 109.46699 * 174.72590 * 1 2 3 25 25 H 1.08995 * 109.47005 * 294.71940 * 1 2 3 26 26 H 1.09001 * 109.47236 * 240.00101 * 2 1 3 27 27 H 1.08999 * 109.46893 * 120.00178 * 2 1 3 28 28 H 0.97004 * 120.00079 * 179.97438 * 8 7 5 29 29 H 1.08995 * 108.79677 * 32.98169 * 14 13 3 30 30 H 1.08998 * 108.70766 * 274.68622 * 14 13 3 31 31 H 1.09004 * 109.05489 * 181.86891 * 15 14 13 32 32 H 1.08992 * 109.05706 * 300.85298 * 15 14 13 33 33 H 1.09000 * 109.58018 * 42.58863 * 16 15 14 34 34 H 1.09005 * 109.57019 * 162.96712 * 16 15 14 35 35 H 1.08997 * 109.47734 * 180.02562 * 20 19 17 36 36 H 1.09004 * 109.46818 * 300.00807 * 20 19 17 37 37 H 1.09003 * 109.47197 * 59.99788 * 20 19 17 38 38 H 1.09003 * 108.91750 * 197.57622 * 21 17 16 39 39 H 1.08997 * 108.91614 * 79.02066 * 21 17 16 40 40 H 1.09003 * 108.98078 * 339.94933 * 22 13 3 41 41 H 1.09005 * 108.98186 * 98.66419 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6324 1.9720 -0.8610 5 6 3.5450 1.4433 -0.0762 6 1 4.1255 1.8965 0.7137 7 6 4.1810 0.8651 -1.1543 8 7 3.4741 0.3135 -2.1164 9 14 6.0467 0.8654 -1.2485 10 1 6.5753 -0.3595 -0.5964 11 1 6.4704 0.8909 -2.6715 12 1 6.5772 2.0651 -0.5524 13 7 1.6118 2.1131 1.2349 14 6 1.8792 3.5653 1.1689 15 6 0.9852 4.3465 2.0165 16 6 1.1385 3.9648 3.5058 17 6 0.4197 2.6653 3.7507 18 1 -0.4044 2.5806 3.0425 19 8 -0.1160 2.6778 5.0754 20 6 -1.4081 3.2800 5.1743 21 6 1.3351 1.4327 3.5970 22 6 2.2788 1.5534 2.3852 23 1 -0.3633 0.5934 -0.8389 24 1 -0.3633 -1.0233 -0.0945 25 1 -0.3633 0.4297 0.9335 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9215 -0.0929 -2.8751 29 1 1.7638 3.8971 0.1372 30 1 2.9073 3.7461 1.4825 31 1 1.2144 5.4052 1.8949 32 1 -0.0446 4.1677 1.7075 33 1 2.1954 3.8501 3.7466 34 1 0.7027 4.7454 4.1295 35 1 -1.7445 3.2505 6.2106 36 1 -1.3526 4.3159 4.8399 37 1 -2.1127 2.7332 4.5475 38 1 0.7147 0.5448 3.4748 39 1 1.9334 1.3219 4.5013 40 1 2.6556 0.5630 2.1294 41 1 3.1201 2.1927 2.6532 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692037020.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:50 Heat of formation + Delta-G solvation = -53.081306 kcal Electronic energy + Delta-G solvation = -19008.054006 eV Core-core repulsion = 16308.645402 eV Total energy + Delta-G solvation = -2699.408604 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.18701 -37.26696 -34.42271 -32.07847 -31.51200 -30.79050 -27.06114 -26.46427 -25.02460 -23.73667 -22.81834 -20.22638 -19.97230 -18.64707 -16.46974 -16.21413 -15.48400 -15.24994 -14.79673 -14.45440 -13.96309 -13.40676 -13.30441 -13.02287 -12.75930 -12.19664 -12.12465 -11.80056 -11.59669 -11.32004 -11.14894 -10.88979 -10.80343 -10.67078 -10.41705 -10.30993 -10.17006 -9.87746 -9.81097 -9.60232 -9.39372 -9.24585 -9.06368 -8.37187 -7.18091 -6.00006 -4.13061 3.25971 3.33535 3.36188 4.02166 4.38839 4.91003 5.18767 5.24507 5.35881 5.42711 5.45991 5.57266 5.70681 5.75229 5.80252 5.94910 6.06372 6.19008 6.27243 6.33705 6.38058 6.47216 6.51073 6.56719 6.67433 6.73129 6.76193 6.86495 6.87462 7.14413 7.18479 7.38379 7.52352 7.61331 7.76807 8.02407 8.16160 8.33085 8.50669 8.97850 9.54946 10.99500 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031624 B = 0.007026 C = 0.006512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.190478 B = 3984.252865 C = 4298.608641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C 0.215 3.785 4 H 0.038 0.962 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.526 5.526 14 C 0.059 3.941 15 C -0.109 4.109 16 C -0.135 4.135 17 C 0.101 3.899 18 H 0.063 0.937 19 O -0.399 6.399 20 C 0.034 3.966 21 C -0.104 4.104 22 C 0.068 3.932 23 H 0.038 0.962 24 H 0.024 0.976 25 H 0.045 0.955 26 H 0.092 0.908 27 H 0.033 0.967 28 H 0.261 0.739 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.522 4.792 8.978 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.250 5.250 14 C -0.069 4.069 15 C -0.147 4.147 16 C -0.173 4.173 17 C 0.044 3.956 18 H 0.081 0.919 19 O -0.318 6.318 20 C -0.063 4.063 21 C -0.143 4.143 22 C -0.062 4.062 23 H 0.057 0.943 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.110 0.890 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.922 4.541 8.981 12.214 hybrid contribution 1.806 0.243 -0.441 1.875 sum -5.116 4.784 8.540 11.045 Atomic orbital electron populations 1.21684 0.98889 0.98298 1.00444 1.21612 0.92202 0.99151 1.01908 1.19405 0.92719 0.91007 0.86029 0.94460 1.21797 0.92640 1.37573 1.06224 0.92661 1.24918 0.97874 0.95041 0.95574 1.69876 1.34930 1.37809 1.09754 0.86686 0.86294 0.78386 0.77188 1.20687 1.21231 1.20104 1.61988 1.57026 1.01568 1.04400 1.20772 0.96880 0.90007 0.99231 1.20605 1.01088 0.98700 0.94295 1.21877 1.01591 0.97111 0.96695 1.21963 0.96379 0.94847 0.82373 0.91930 1.87878 1.32644 1.80903 1.30381 1.22677 0.85188 0.96811 1.01623 1.22053 0.97844 0.96097 0.98264 1.21683 0.93340 1.01135 0.89993 0.94269 0.95681 0.93592 0.89013 0.94837 0.92903 0.91987 0.95085 0.92499 0.92006 0.91614 0.92303 0.90440 0.94483 0.94334 0.92155 0.92295 0.90327 0.95280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.72 37.16 0.36 -2.36 16 2 C -0.11 -2.56 5.14 -26.73 -0.14 -2.70 16 3 C 0.21 5.12 1.65 -68.86 -0.11 5.01 16 4 H 0.04 0.99 7.78 -51.93 -0.40 0.59 16 5 C -0.54 -14.16 7.14 -34.44 -0.25 -14.41 16 6 H 0.06 1.46 6.66 -52.49 -0.35 1.11 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.89 -24.51 11.30 55.43 0.63 -23.88 16 9 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.53 -10.65 3.65 -232.94 -0.85 -11.51 16 14 C 0.06 1.11 4.43 -6.70 -0.03 1.08 16 15 C -0.11 -1.66 5.53 -29.31 -0.16 -1.83 16 16 C -0.13 -2.01 5.23 -27.18 -0.14 -2.15 16 17 C 0.10 1.59 2.25 -27.29 -0.06 1.53 16 18 H 0.06 1.02 6.99 -51.93 -0.36 0.66 16 19 O -0.40 -6.09 10.23 -35.23 -0.36 -6.45 16 20 C 0.03 0.39 10.69 101.05 1.08 1.47 16 21 C -0.10 -1.75 5.78 -25.49 -0.15 -1.90 16 22 C 0.07 1.32 3.70 -4.67 -0.02 1.30 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.04 0.88 7.85 -51.93 -0.41 0.47 16 26 H 0.09 2.39 5.99 -51.93 -0.31 2.08 16 27 H 0.03 0.77 6.41 -51.93 -0.33 0.44 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.06 1.22 7.58 -51.93 -0.39 0.83 16 30 H 0.03 0.61 7.03 -51.93 -0.37 0.25 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.94 7.58 -51.93 -0.39 0.55 16 33 H 0.07 1.03 7.14 -51.93 -0.37 0.66 16 34 H 0.06 0.80 7.30 -51.93 -0.38 0.42 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.04 0.40 7.54 -51.93 -0.39 0.00 16 37 H 0.04 0.43 8.07 -51.93 -0.42 0.01 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 1.68 5.49 -51.93 -0.28 1.39 16 41 H 0.03 0.58 6.19 -51.93 -0.32 0.25 16 LS Contribution 305.35 15.07 4.60 4.60 Total: -1.00 -26.85 305.35 -7.87 -34.72 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -7.16 Total: -0.15 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 0.29 Total: -13.22 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.22 Total: -35.39 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.36 Total: -6.45 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.85 -7.87 -34.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692037020.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.359 kcal (2) G-P(sol) polarization free energy of solvation -26.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds