Wall clock time and date at job start Sun Mar 29 2020 23:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46965 * 2 1 4 4 H 1.09000 * 109.47474 * 57.41356 * 3 2 1 5 5 C 1.50700 * 109.46946 * 177.41579 * 3 2 1 6 6 H 1.08000 * 120.00173 * 119.99574 * 5 3 2 7 7 C 1.37874 * 120.00007 * 299.99739 * 5 3 2 8 8 N 1.31518 * 120.00023 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00230 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46792 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47085 * 119.99949 * 9 7 5 12 12 H 1.48506 * 109.47031 * 240.00073 * 9 7 5 13 13 N 1.46905 * 109.47146 * 297.41009 * 3 2 1 14 14 C 1.47633 * 111.00210 * 296.87167 * 13 3 2 15 15 C 1.50815 * 108.05422 * 150.34497 * 14 13 3 16 16 C 1.53821 * 111.62372 * 95.05523 * 15 14 13 17 17 C 1.54171 * 111.96694 * 319.04470 * 16 15 14 18 18 H 1.08995 * 108.85443 * 79.29788 * 17 16 15 19 19 O 1.42901 * 108.85307 * 197.68063 * 17 16 15 20 20 C 1.42898 * 114.00107 * 273.08842 * 19 17 16 21 21 C 1.50758 * 112.60927 * 318.48468 * 17 16 15 22 22 C 1.39769 * 110.99847 * 167.97375 * 13 3 2 23 23 H 1.09000 * 109.47184 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46945 * 300.00465 * 1 2 3 25 25 H 1.08998 * 109.47295 * 59.99724 * 1 2 3 26 26 H 1.08995 * 109.47341 * 239.99777 * 2 1 3 27 27 H 1.09002 * 109.47415 * 119.99525 * 2 1 3 28 28 H 0.97001 * 119.99894 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.74460 * 269.98688 * 14 13 3 30 30 H 1.09005 * 109.74572 * 30.70560 * 14 13 3 31 31 H 1.09003 * 109.04604 * 334.50133 * 15 14 13 32 32 H 1.09000 * 108.99112 * 215.56987 * 15 14 13 33 33 H 1.09002 * 108.97913 * 198.40229 * 16 15 14 34 34 H 1.08997 * 108.91399 * 79.63785 * 16 15 14 35 35 H 1.08998 * 109.47069 * 59.99802 * 20 19 17 36 36 H 1.08998 * 109.47482 * 179.97438 * 20 19 17 37 37 H 1.09001 * 109.47165 * 299.99724 * 20 19 17 38 38 H 1.08998 * 109.54566 * 333.15594 * 21 17 16 39 39 H 1.09004 * 109.61492 * 212.92836 * 21 17 16 40 40 H 1.08994 * 109.03009 * 309.72023 * 22 13 3 41 41 H 1.09007 * 109.02071 * 68.62080 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6393 1.9696 0.8659 5 6 3.5456 1.4430 0.0641 6 1 4.1197 1.8986 -0.7292 7 6 4.1902 0.8619 1.1354 8 7 3.4911 0.3067 2.1011 9 14 6.0566 0.8631 1.2152 10 1 6.6029 1.5448 0.0143 11 1 6.4993 1.5813 2.4371 12 1 6.5511 -0.5366 1.2571 13 7 1.6021 2.1168 -1.2295 14 6 2.1874 1.4739 -2.4227 15 6 1.2264 1.6560 -3.5706 16 6 1.5865 2.8855 -4.4219 17 6 2.0160 4.0836 -3.5519 18 1 3.0503 3.9394 -3.2397 19 8 1.9350 5.2759 -4.3354 20 6 3.1154 5.5568 -5.0901 21 6 1.1550 4.2473 -2.3252 22 6 1.8109 3.4962 -1.1459 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.9446 -0.1018 2.8550 29 1 3.1414 1.9432 -2.6631 30 1 2.3368 0.4110 -2.2325 31 1 0.2185 1.7804 -3.1744 32 1 1.2536 0.7668 -4.2005 33 1 0.7187 3.1718 -5.0161 34 1 2.4045 2.6233 -5.0929 35 1 3.3122 4.7334 -5.7767 36 1 2.9737 6.4766 -5.6575 37 1 3.9608 5.6744 -4.4121 38 1 0.1653 3.8326 -2.5164 39 1 1.0658 5.3055 -2.0793 40 1 1.3874 3.8638 -0.2113 41 1 2.8828 3.6943 -1.1522 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692037021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:52 Heat of formation + Delta-G solvation = -51.755467 kcal Electronic energy + Delta-G solvation = -18965.638399 eV Core-core repulsion = 16266.287288 eV Total energy + Delta-G solvation = -2699.351111 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.31683 -37.33412 -34.33053 -32.23347 -31.66598 -30.47663 -27.09999 -26.44369 -25.10268 -23.87873 -22.78754 -20.48544 -19.56668 -18.79056 -16.56612 -16.33513 -15.63889 -15.07558 -14.85460 -14.45416 -13.98908 -13.73612 -13.36079 -12.80427 -12.66029 -12.49854 -11.80420 -11.73506 -11.57276 -11.44535 -11.17987 -10.98451 -10.87776 -10.73106 -10.67578 -10.34336 -10.09834 -9.90468 -9.77242 -9.60566 -9.42006 -9.21055 -9.02059 -8.36907 -7.02773 -5.98993 -4.12551 3.24126 3.33053 3.35838 3.96185 4.38462 4.91153 5.13930 5.23885 5.27585 5.40144 5.42753 5.51303 5.62609 5.67967 5.77403 5.91891 6.02866 6.21115 6.22530 6.31483 6.39027 6.41648 6.47802 6.50670 6.66134 6.69391 6.75030 6.89544 6.95776 7.16020 7.21395 7.41442 7.41813 7.65279 7.79722 8.01889 8.18435 8.42739 8.66689 8.98971 9.55284 10.99748 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022932 B = 0.007967 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.709301 B = 3513.434706 C = 4230.321926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C 0.218 3.782 4 H 0.037 0.963 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.551 5.551 14 C 0.072 3.928 15 C -0.114 4.114 16 C -0.134 4.134 17 C 0.091 3.909 18 H 0.055 0.945 19 O -0.393 6.393 20 C 0.032 3.968 21 C -0.117 4.117 22 C 0.090 3.910 23 H 0.024 0.976 24 H 0.037 0.963 25 H 0.049 0.951 26 H 0.034 0.966 27 H 0.091 0.909 28 H 0.260 0.740 29 H 0.028 0.972 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.894 4.717 -10.157 11.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C 0.113 3.887 4 H 0.055 0.945 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.275 5.275 14 C -0.055 4.055 15 C -0.153 4.153 16 C -0.172 4.172 17 C 0.034 3.966 18 H 0.073 0.927 19 O -0.312 6.312 20 C -0.065 4.065 21 C -0.155 4.155 22 C -0.041 4.041 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -3.502 4.697 -10.021 11.608 hybrid contribution 2.332 -0.063 0.093 2.335 sum -1.170 4.634 -9.928 11.018 Atomic orbital electron populations 1.21705 0.98854 0.98322 1.00630 1.21634 0.92228 0.99225 1.01868 1.19276 0.92544 0.91019 0.85891 0.94520 1.21783 0.92723 1.37201 1.06248 0.92790 1.24907 0.97851 0.95104 0.95580 1.69885 1.34824 1.37793 1.09874 0.86647 0.86388 0.77712 0.77889 1.20042 1.21035 1.20994 1.59305 1.61138 1.02536 1.04518 1.21597 0.94226 1.00241 0.89442 1.21452 1.01561 0.95609 0.96640 1.22372 1.00934 0.95554 0.98347 1.22183 0.99798 0.83698 0.90883 0.92663 1.87916 1.37501 1.43849 1.61946 1.22706 0.88142 1.00428 0.95216 1.21664 0.99786 1.00571 0.93449 1.20658 0.97592 0.89480 0.96375 0.95717 0.94347 0.93224 0.94746 0.89103 0.92962 0.95359 0.90343 0.90777 0.92743 0.91893 0.93077 0.94441 0.90242 0.94268 0.90677 0.91228 0.91684 0.96207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.78 37.16 0.36 -2.38 16 2 C -0.11 -2.57 5.10 -26.73 -0.14 -2.71 16 3 C 0.22 5.24 1.68 -68.86 -0.12 5.12 16 4 H 0.04 0.98 7.79 -51.93 -0.40 0.58 16 5 C -0.54 -14.20 7.32 -34.44 -0.25 -14.45 16 6 H 0.05 1.44 6.52 -52.49 -0.34 1.10 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 8 N -0.89 -24.60 11.30 55.43 0.63 -23.97 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.55 -11.20 3.23 -233.38 -0.75 -11.96 16 14 C 0.07 1.37 4.13 -4.52 -0.02 1.35 16 15 C -0.11 -1.79 5.41 -27.40 -0.15 -1.94 16 16 C -0.13 -1.95 5.40 -25.69 -0.14 -2.09 16 17 C 0.09 1.44 2.11 -27.24 -0.06 1.38 16 18 H 0.06 0.93 6.19 -51.93 -0.32 0.61 16 19 O -0.39 -5.98 10.20 -35.23 -0.36 -6.34 16 20 C 0.03 0.38 10.78 101.05 1.09 1.47 16 21 C -0.12 -1.90 5.35 -27.10 -0.15 -2.05 16 22 C 0.09 1.72 4.70 -6.75 -0.03 1.69 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.95 7.68 -51.93 -0.40 0.55 16 26 H 0.03 0.78 6.03 -51.93 -0.31 0.47 16 27 H 0.09 2.37 6.00 -51.93 -0.31 2.05 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.03 0.56 6.12 -51.93 -0.32 0.24 16 30 H 0.08 1.59 5.62 -51.93 -0.29 1.30 16 31 H 0.07 1.20 7.26 -51.93 -0.38 0.82 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 35 H 0.04 0.41 8.07 -51.93 -0.42 -0.01 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.04 0.46 8.07 -51.93 -0.42 0.04 16 38 H 0.07 1.22 7.11 -51.93 -0.37 0.85 16 39 H 0.07 1.08 7.99 -51.93 -0.42 0.67 16 40 H 0.06 1.28 7.77 -51.93 -0.40 0.87 16 41 H 0.02 0.42 6.70 -51.93 -0.35 0.07 16 LS Contribution 304.72 15.07 4.59 4.59 Total: -1.00 -27.00 304.72 -7.72 -34.73 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.12 Total: -0.13 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 0.31 Total: -12.88 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: -0.13 Total: -35.93 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.36 Total: -6.34 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.00 -7.72 -34.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692037021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.030 kcal (2) G-P(sol) polarization free energy of solvation -27.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds