Wall clock time and date at job start Sun Mar 29 2020 23:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46965 * 2 1 4 4 H 1.09000 * 109.47474 * 57.41356 * 3 2 1 5 5 C 1.50700 * 109.46946 * 177.41579 * 3 2 1 6 6 H 1.08000 * 120.00173 * 119.99574 * 5 3 2 7 7 C 1.37874 * 120.00007 * 299.99739 * 5 3 2 8 8 N 1.31518 * 120.00023 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00230 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46792 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47085 * 119.99949 * 9 7 5 12 12 H 1.48506 * 109.47031 * 240.00073 * 9 7 5 13 13 N 1.46905 * 109.47146 * 297.41009 * 3 2 1 14 14 C 1.47633 * 111.00210 * 296.87167 * 13 3 2 15 15 C 1.50815 * 108.05422 * 150.34497 * 14 13 3 16 16 C 1.53821 * 111.62372 * 95.05523 * 15 14 13 17 17 C 1.54171 * 111.96694 * 319.04470 * 16 15 14 18 18 H 1.08995 * 108.85443 * 79.29788 * 17 16 15 19 19 O 1.42901 * 108.85307 * 197.68063 * 17 16 15 20 20 C 1.42898 * 114.00107 * 273.08842 * 19 17 16 21 21 C 1.50758 * 112.60927 * 318.48468 * 17 16 15 22 22 C 1.39769 * 110.99847 * 167.97375 * 13 3 2 23 23 H 1.09000 * 109.47184 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46945 * 300.00465 * 1 2 3 25 25 H 1.08998 * 109.47295 * 59.99724 * 1 2 3 26 26 H 1.08995 * 109.47341 * 239.99777 * 2 1 3 27 27 H 1.09002 * 109.47415 * 119.99525 * 2 1 3 28 28 H 0.97001 * 119.99894 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.74460 * 269.98688 * 14 13 3 30 30 H 1.09005 * 109.74572 * 30.70560 * 14 13 3 31 31 H 1.09003 * 109.04604 * 334.50133 * 15 14 13 32 32 H 1.09000 * 108.99112 * 215.56987 * 15 14 13 33 33 H 1.09002 * 108.97913 * 198.40229 * 16 15 14 34 34 H 1.08997 * 108.91399 * 79.63785 * 16 15 14 35 35 H 1.08998 * 109.47069 * 59.99802 * 20 19 17 36 36 H 1.08998 * 109.47482 * 179.97438 * 20 19 17 37 37 H 1.09001 * 109.47165 * 299.99724 * 20 19 17 38 38 H 1.08998 * 109.54566 * 333.15594 * 21 17 16 39 39 H 1.09004 * 109.61492 * 212.92836 * 21 17 16 40 40 H 1.08994 * 109.03009 * 309.72023 * 22 13 3 41 41 H 1.09007 * 109.02071 * 68.62080 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6393 1.9696 0.8659 5 6 3.5456 1.4430 0.0641 6 1 4.1197 1.8986 -0.7292 7 6 4.1902 0.8619 1.1354 8 7 3.4911 0.3067 2.1011 9 14 6.0566 0.8631 1.2152 10 1 6.6029 1.5448 0.0143 11 1 6.4993 1.5813 2.4371 12 1 6.5511 -0.5366 1.2571 13 7 1.6021 2.1168 -1.2295 14 6 2.1874 1.4739 -2.4227 15 6 1.2264 1.6560 -3.5706 16 6 1.5865 2.8855 -4.4219 17 6 2.0160 4.0836 -3.5519 18 1 3.0503 3.9394 -3.2397 19 8 1.9350 5.2759 -4.3354 20 6 3.1154 5.5568 -5.0901 21 6 1.1550 4.2473 -2.3252 22 6 1.8109 3.4962 -1.1459 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.9446 -0.1018 2.8550 29 1 3.1414 1.9432 -2.6631 30 1 2.3368 0.4110 -2.2325 31 1 0.2185 1.7804 -3.1744 32 1 1.2536 0.7668 -4.2005 33 1 0.7187 3.1718 -5.0161 34 1 2.4045 2.6233 -5.0929 35 1 3.3122 4.7334 -5.7767 36 1 2.9737 6.4766 -5.6575 37 1 3.9608 5.6744 -4.4121 38 1 0.1653 3.8326 -2.5164 39 1 1.0658 5.3055 -2.0793 40 1 1.3874 3.8638 -0.2113 41 1 2.8828 3.6943 -1.1522 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692037021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:51 Heat of formation + Delta-G solvation = -67.181526 kcal Electronic energy + Delta-G solvation = -18966.307323 eV Core-core repulsion = 16266.287288 eV Total energy + Delta-G solvation = -2700.020035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.75985 -38.71841 -35.94817 -33.94497 -33.32769 -32.00127 -28.82445 -27.58064 -26.68943 -25.32377 -24.51284 -22.08343 -21.13457 -20.33285 -18.35569 -17.79714 -17.14421 -16.46558 -16.31990 -16.03962 -15.59980 -15.04520 -14.85721 -14.45434 -14.13984 -13.98088 -13.46909 -13.26845 -13.06169 -12.90710 -12.86182 -12.64922 -12.50068 -12.23944 -12.13437 -11.96173 -11.68627 -11.54438 -11.42313 -11.14796 -11.07165 -10.90416 -10.46276 -10.39376 -8.81926 -8.01893 -6.25540 1.33850 1.37282 1.46101 2.38791 2.83391 3.15008 3.41045 3.89888 3.91738 4.17652 4.25583 4.37510 4.51042 4.53699 4.57373 4.59714 4.65822 4.79758 4.81513 4.85536 4.89570 4.96079 4.97713 5.01027 5.19172 5.23127 5.25075 5.32451 5.46118 5.49397 5.54933 5.58478 5.67414 5.85292 6.11467 6.25174 6.29187 6.45461 6.94306 7.01395 7.45748 8.91687 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022932 B = 0.007967 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.709301 B = 3513.434706 C = 4230.321926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.223 3.777 4 H 0.002 0.998 5 C -0.548 4.548 6 H 0.044 0.956 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.943 3.057 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.279 1.279 13 N -0.543 5.543 14 C 0.076 3.924 15 C -0.106 4.106 16 C -0.127 4.127 17 C 0.094 3.906 18 H 0.037 0.963 19 O -0.405 6.405 20 C 0.025 3.975 21 C -0.104 4.104 22 C 0.092 3.908 23 H 0.044 0.956 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.035 0.965 27 H 0.060 0.940 28 H 0.261 0.739 29 H 0.015 0.985 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.103 0.897 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.054 0.946 41 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 4.962 -12.075 13.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.144 4.144 3 C 0.117 3.883 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.062 0.938 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.770 3.230 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.204 1.204 13 N -0.266 5.266 14 C -0.051 4.051 15 C -0.144 4.144 16 C -0.165 4.165 17 C 0.037 3.963 18 H 0.055 0.945 19 O -0.324 6.324 20 C -0.071 4.071 21 C -0.142 4.142 22 C -0.039 4.039 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.033 0.967 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.055 0.945 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges -3.828 4.950 -11.957 13.496 hybrid contribution 2.460 -0.092 0.684 2.555 sum -1.368 4.859 -11.274 12.352 Atomic orbital electron populations 1.21567 0.96192 0.99723 1.00798 1.21464 0.94547 0.98018 1.00336 1.19064 0.91264 0.91592 0.86416 0.98009 1.21995 0.94085 1.36759 1.05916 0.93768 1.25578 1.01703 0.95033 0.95444 1.70005 1.36224 1.38408 1.10286 0.85742 0.81799 0.77770 0.77717 1.19915 1.20815 1.20442 1.59330 1.60725 1.02848 1.03692 1.21609 0.94716 0.98848 0.89910 1.21349 1.00175 0.97264 0.95596 1.22308 1.01942 0.94260 0.98020 1.22050 0.98516 0.84751 0.91015 0.94450 1.87882 1.38995 1.43402 1.62158 1.22922 0.87020 1.01975 0.95180 1.21507 0.99756 1.00450 0.92486 1.20650 0.96365 0.89238 0.97634 0.93685 0.95051 0.92074 0.94621 0.92186 0.92934 0.96691 0.91854 0.90841 0.90624 0.90455 0.91943 0.93417 0.87907 0.94516 0.89965 0.90417 0.92783 0.98646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.89 9.78 71.98 0.70 -4.19 16 2 C -0.11 -4.92 5.10 30.60 0.16 -4.76 16 3 C 0.22 10.99 1.68 44.17 0.07 11.07 16 4 H 0.00 0.11 7.79 -2.39 -0.02 0.09 16 5 C -0.55 -29.53 7.32 25.60 0.19 -29.34 16 6 H 0.04 2.42 6.52 -2.91 -0.02 2.40 16 7 C 0.02 1.22 5.30 84.65 0.45 1.67 16 8 N -0.91 -51.69 11.30 21.45 0.24 -51.45 16 9 Si 0.94 43.57 29.54 68.60 2.03 45.60 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 N -0.54 -22.16 3.23 -892.27 -2.88 -25.05 16 14 C 0.08 2.84 4.13 85.45 0.35 3.20 16 15 C -0.11 -3.05 5.41 30.16 0.16 -2.89 16 16 C -0.13 -3.35 5.40 31.27 0.17 -3.18 16 17 C 0.09 2.80 2.11 30.26 0.06 2.86 16 18 H 0.04 1.24 6.19 -2.39 -0.01 1.23 16 19 O -0.40 -11.40 10.20 -148.98 -1.52 -12.92 16 20 C 0.03 0.54 10.78 113.37 1.22 1.76 16 21 C -0.10 -3.27 5.35 30.35 0.16 -3.11 16 22 C 0.09 3.57 4.70 88.08 0.41 3.99 16 23 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.06 2.23 7.68 -2.39 -0.02 2.21 16 26 H 0.04 1.62 6.03 -2.39 -0.01 1.61 16 27 H 0.06 3.20 6.00 -2.39 -0.01 3.18 16 28 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.01 0.59 6.12 -2.39 -0.01 0.58 16 30 H 0.06 2.55 5.62 -2.38 -0.01 2.53 16 31 H 0.07 2.16 7.26 -2.39 -0.02 2.15 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 35 H 0.05 0.93 8.07 -2.39 -0.02 0.91 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.04 0.80 8.07 -2.39 -0.02 0.78 16 38 H 0.08 2.50 7.11 -2.39 -0.02 2.48 16 39 H 0.08 2.32 7.99 -2.38 -0.02 2.30 16 40 H 0.05 2.19 7.77 -2.39 -0.02 2.17 16 41 H 0.00 -0.19 6.70 -2.38 -0.02 -0.21 16 Total: -1.00 -58.11 304.72 2.97 -55.15 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 0.98 Total: 11.60 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 4.12 Total: -22.93 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -2.64 Total: -76.49 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -1.52 Total: -12.92 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -58.11 2.97 -55.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692037021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.035 kcal (2) G-P(sol) polarization free energy of solvation -58.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds