Wall clock time and date at job start Sun Mar 29 2020 23:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47356 * 2 1 4 4 H 1.09000 * 109.47490 * 177.45098 * 3 2 1 5 5 C 1.50709 * 109.46825 * 297.45089 * 3 2 1 6 6 H 1.08001 * 119.99234 * 120.00067 * 5 3 2 7 7 C 1.37872 * 120.00156 * 299.99573 * 5 3 2 8 8 N 1.31513 * 119.99924 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00179 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46824 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46990 * 119.99825 * 9 7 5 12 12 H 1.48497 * 109.47108 * 240.00225 * 9 7 5 13 13 N 1.46898 * 109.47065 * 57.45016 * 3 2 1 14 14 C 1.48202 * 110.82934 * 61.73870 * 13 3 2 15 15 C 1.50436 * 112.71754 * 85.11452 * 14 13 3 16 16 C 1.54312 * 108.67329 * 93.49396 * 15 14 13 17 17 C 1.45876 * 112.18035 * 281.38249 * 16 15 14 18 18 H 1.08999 * 108.93952 * 300.41879 * 17 16 15 19 19 O 1.42900 * 108.93839 * 181.80999 * 17 16 15 20 20 C 1.42897 * 113.99972 * 89.99961 * 19 17 16 21 21 C 1.54311 * 112.19135 * 61.11608 * 17 16 15 22 22 C 1.48000 * 111.00127 * 190.50928 * 13 3 2 23 23 H 1.09001 * 109.47332 * 185.23687 * 1 2 3 24 24 H 1.09002 * 109.47035 * 305.23663 * 1 2 3 25 25 H 1.09003 * 109.47248 * 65.23096 * 1 2 3 26 26 H 1.08995 * 109.47222 * 240.00067 * 2 1 3 27 27 H 1.09003 * 109.47330 * 120.00061 * 2 1 3 28 28 H 0.97001 * 120.00141 * 179.97438 * 8 7 5 29 29 H 1.08993 * 109.12756 * 324.09711 * 14 13 3 30 30 H 1.09005 * 108.60500 * 205.76224 * 14 13 3 31 31 H 1.09002 * 109.63388 * 333.68992 * 15 14 13 32 32 H 1.09002 * 109.63038 * 213.30121 * 15 14 13 33 33 H 1.09009 * 108.93388 * 42.07648 * 16 15 14 34 34 H 1.08997 * 108.94398 * 160.68540 * 16 15 14 35 35 H 1.09001 * 109.47612 * 180.02562 * 20 19 17 36 36 H 1.09002 * 109.47569 * 300.00590 * 20 19 17 37 37 H 1.09006 * 109.47150 * 59.99922 * 20 19 17 38 38 H 1.09001 * 109.63447 * 41.14972 * 21 17 16 39 39 H 1.09003 * 109.63153 * 161.74729 * 21 17 16 40 40 H 1.09009 * 108.81203 * 70.48304 * 22 13 3 41 41 H 1.08997 * 108.81214 * 312.21294 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4429 0.0457 5 6 1.5899 2.1344 -1.2609 6 1 0.9657 3.0137 -1.2009 7 6 1.9751 1.6450 -2.4910 8 7 2.7348 0.5740 -2.5640 9 14 1.4178 2.5030 -4.0539 10 1 0.5777 3.6760 -3.7019 11 1 2.6061 2.9577 -4.8196 12 1 0.6269 1.5579 -4.8823 13 7 1.5007 2.1525 1.1674 14 6 1.9598 1.5207 2.4269 15 6 3.3090 2.0184 2.8685 16 6 3.1058 3.1902 3.8516 17 6 2.7860 4.4366 3.1644 18 1 3.6021 4.6862 2.4864 19 8 2.6546 5.4795 4.1324 20 6 3.8745 6.1684 4.4137 21 6 1.4758 4.3364 2.3553 22 6 1.7624 3.6061 1.0717 23 1 -0.3634 -1.0234 0.0938 24 1 -0.3633 0.5929 0.8394 25 1 -0.3634 0.4306 -0.9331 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.0055 0.2294 -3.4293 29 1 2.0120 0.4411 2.2865 30 1 1.2323 1.7363 3.2095 31 1 3.8744 2.3612 2.0019 32 1 3.8517 1.2138 3.3648 33 1 2.2918 2.9430 4.5332 34 1 4.0193 3.3294 4.4298 35 1 3.6908 6.9437 5.1576 36 1 4.6100 5.4624 4.7993 37 1 4.2535 6.6245 3.4991 38 1 0.7310 3.7868 2.9310 39 1 1.1055 5.3371 2.1326 40 1 1.1378 4.0244 0.2823 41 1 2.8087 3.7581 0.8067 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692037023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:54 Heat of formation + Delta-G solvation = -46.209951 kcal Electronic energy + Delta-G solvation = -18903.679271 eV Core-core repulsion = 16204.568631 eV Total energy + Delta-G solvation = -2699.110640 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.45325 -37.23855 -34.50261 -31.98725 -31.74637 -30.32576 -27.08750 -26.70178 -24.89775 -23.94962 -22.87737 -20.59125 -19.87010 -18.38645 -16.71774 -16.15780 -15.78975 -15.13611 -15.06223 -14.29295 -13.93603 -13.55900 -13.12173 -13.05739 -12.63595 -12.53244 -12.00899 -11.82419 -11.62086 -11.46846 -11.05044 -10.93474 -10.83152 -10.77583 -10.46370 -10.38714 -10.19881 -10.12668 -9.84227 -9.48814 -9.34857 -9.32761 -8.71472 -8.37133 -6.94840 -5.98687 -4.02219 3.29853 3.38366 3.42157 3.84459 4.42255 4.82080 5.05640 5.13112 5.29159 5.31748 5.34143 5.36373 5.58710 5.60942 5.67137 5.86478 5.95399 6.11647 6.16405 6.27077 6.32379 6.36415 6.46535 6.56013 6.64781 6.66633 6.80439 6.86659 6.88990 7.21158 7.33310 7.40357 7.48499 7.71218 7.82492 7.87368 8.23698 8.39571 8.68263 9.04433 9.62339 11.07675 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027956 B = 0.007067 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.341158 B = 3961.249804 C = 4491.496533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C 0.219 3.781 4 H -0.004 1.004 5 C -0.499 4.499 6 H 0.063 0.937 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.285 1.285 13 N -0.540 5.540 14 C 0.052 3.948 15 C -0.143 4.143 16 C -0.136 4.136 17 C 0.091 3.909 18 H 0.053 0.947 19 O -0.392 6.392 20 C 0.032 3.968 21 C -0.115 4.115 22 C 0.077 3.923 23 H 0.013 0.987 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.091 0.909 27 H 0.014 0.986 28 H 0.259 0.741 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.361 5.321 10.675 12.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.149 4.149 3 C 0.113 3.887 4 H 0.013 0.987 5 C -0.537 4.537 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.265 5.265 14 C -0.076 4.076 15 C -0.182 4.182 16 C -0.174 4.174 17 C 0.034 3.966 18 H 0.071 0.929 19 O -0.311 6.311 20 C -0.065 4.065 21 C -0.153 4.153 22 C -0.050 4.050 23 H 0.032 0.968 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.109 0.891 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.791 5.212 10.611 11.849 hybrid contribution 1.084 0.418 -0.967 1.512 sum 1.875 5.630 9.644 11.324 Atomic orbital electron populations 1.21458 0.97369 0.97211 1.01802 1.21589 0.95120 0.98261 0.99926 1.19219 0.92279 0.90743 0.86450 0.98663 1.21215 1.30765 1.11897 0.89836 0.91872 1.24905 0.95236 0.95069 0.98932 1.69888 1.36359 1.22527 1.24432 0.86555 0.78360 0.79667 0.83535 1.19768 1.21287 1.21074 1.62032 1.61041 1.01367 1.02074 1.21959 0.92947 0.99559 0.93144 1.21835 1.00305 0.97152 0.98944 1.21020 1.01514 0.95712 0.99107 1.21274 0.98900 0.86941 0.89438 0.92867 1.87922 1.31685 1.49683 1.61827 1.22728 0.87456 0.96165 1.00173 1.21583 0.95919 1.01004 0.96751 1.21473 0.99423 0.88776 0.95357 0.96768 0.93305 0.92888 0.89091 0.96767 0.93146 0.91111 0.92538 0.91520 0.91985 0.91307 0.92912 0.90105 0.94478 0.94212 0.90525 0.91101 0.90195 0.95721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.50 37.15 0.35 -2.30 16 2 C -0.11 -2.62 5.21 -26.73 -0.14 -2.76 16 3 C 0.22 5.32 1.71 -68.86 -0.12 5.20 16 4 H 0.00 -0.11 7.71 -51.93 -0.40 -0.51 16 5 C -0.50 -13.13 6.94 -34.44 -0.24 -13.37 16 6 H 0.06 1.67 6.05 -52.49 -0.32 1.35 16 7 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 8 N -0.89 -25.01 11.30 55.43 0.63 -24.39 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.54 -11.13 3.61 -229.13 -0.83 -11.96 16 14 C 0.05 0.93 5.01 -4.39 -0.02 0.90 16 15 C -0.14 -2.28 5.56 -27.32 -0.15 -2.43 16 16 C -0.14 -1.95 4.82 -29.42 -0.14 -2.09 16 17 C 0.09 1.37 2.16 -29.42 -0.06 1.31 16 18 H 0.05 0.82 7.10 -51.93 -0.37 0.45 16 19 O -0.39 -5.73 10.26 -35.23 -0.36 -6.09 16 20 C 0.03 0.35 10.76 101.05 1.09 1.44 16 21 C -0.11 -1.85 5.27 -27.32 -0.14 -2.00 16 22 C 0.08 1.48 4.26 -4.49 -0.02 1.47 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 24 H 0.05 1.03 7.37 -51.93 -0.38 0.65 16 25 H 0.05 1.25 7.48 -51.93 -0.39 0.86 16 26 H 0.09 2.41 6.01 -51.93 -0.31 2.10 16 27 H 0.01 0.31 6.15 -51.93 -0.32 -0.01 16 28 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 29 H 0.07 1.31 5.59 -51.93 -0.29 1.01 16 30 H 0.06 0.94 6.61 -51.93 -0.34 0.60 16 31 H 0.07 1.20 6.61 -51.93 -0.34 0.86 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.98 7.53 -51.92 -0.39 0.59 16 34 H 0.05 0.69 7.55 -51.93 -0.39 0.30 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.04 0.38 7.59 -51.93 -0.39 -0.01 16 37 H 0.04 0.42 8.07 -51.93 -0.42 0.00 16 38 H 0.08 1.26 7.09 -51.93 -0.37 0.89 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.65 6.38 -51.92 -0.33 1.31 16 41 H 0.02 0.50 6.48 -51.93 -0.34 0.16 16 LS Contribution 300.76 15.07 4.53 4.53 Total: -1.00 -27.50 300.76 -7.67 -35.16 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.92 Total: -0.20 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 0.31 Total: -13.12 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.20 Total: -36.35 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.36 Total: -6.09 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.50 -7.67 -35.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692037023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.046 kcal (2) G-P(sol) polarization free energy of solvation -27.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds