Wall clock time and date at job start Sun Mar 29 2020 23:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47356 * 2 1 4 4 H 1.09000 * 109.47490 * 177.45098 * 3 2 1 5 5 C 1.50709 * 109.46825 * 297.45089 * 3 2 1 6 6 H 1.08001 * 119.99234 * 120.00067 * 5 3 2 7 7 C 1.37872 * 120.00156 * 299.99573 * 5 3 2 8 8 N 1.31513 * 119.99924 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00179 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46824 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46990 * 119.99825 * 9 7 5 12 12 H 1.48497 * 109.47108 * 240.00225 * 9 7 5 13 13 N 1.46898 * 109.47065 * 57.45016 * 3 2 1 14 14 C 1.48202 * 110.82934 * 61.73870 * 13 3 2 15 15 C 1.50436 * 112.71754 * 85.11452 * 14 13 3 16 16 C 1.54312 * 108.67329 * 93.49396 * 15 14 13 17 17 C 1.45876 * 112.18035 * 281.38249 * 16 15 14 18 18 H 1.08999 * 108.93952 * 300.41879 * 17 16 15 19 19 O 1.42900 * 108.93839 * 181.80999 * 17 16 15 20 20 C 1.42897 * 113.99972 * 89.99961 * 19 17 16 21 21 C 1.54311 * 112.19135 * 61.11608 * 17 16 15 22 22 C 1.48000 * 111.00127 * 190.50928 * 13 3 2 23 23 H 1.09001 * 109.47332 * 185.23687 * 1 2 3 24 24 H 1.09002 * 109.47035 * 305.23663 * 1 2 3 25 25 H 1.09003 * 109.47248 * 65.23096 * 1 2 3 26 26 H 1.08995 * 109.47222 * 240.00067 * 2 1 3 27 27 H 1.09003 * 109.47330 * 120.00061 * 2 1 3 28 28 H 0.97001 * 120.00141 * 179.97438 * 8 7 5 29 29 H 1.08993 * 109.12756 * 324.09711 * 14 13 3 30 30 H 1.09005 * 108.60500 * 205.76224 * 14 13 3 31 31 H 1.09002 * 109.63388 * 333.68992 * 15 14 13 32 32 H 1.09002 * 109.63038 * 213.30121 * 15 14 13 33 33 H 1.09009 * 108.93388 * 42.07648 * 16 15 14 34 34 H 1.08997 * 108.94398 * 160.68540 * 16 15 14 35 35 H 1.09001 * 109.47612 * 180.02562 * 20 19 17 36 36 H 1.09002 * 109.47569 * 300.00590 * 20 19 17 37 37 H 1.09006 * 109.47150 * 59.99922 * 20 19 17 38 38 H 1.09001 * 109.63447 * 41.14972 * 21 17 16 39 39 H 1.09003 * 109.63153 * 161.74729 * 21 17 16 40 40 H 1.09009 * 108.81203 * 70.48304 * 22 13 3 41 41 H 1.08997 * 108.81214 * 312.21294 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4429 0.0457 5 6 1.5899 2.1344 -1.2609 6 1 0.9657 3.0137 -1.2009 7 6 1.9751 1.6450 -2.4910 8 7 2.7348 0.5740 -2.5640 9 14 1.4178 2.5030 -4.0539 10 1 0.5777 3.6760 -3.7019 11 1 2.6061 2.9577 -4.8196 12 1 0.6269 1.5579 -4.8823 13 7 1.5007 2.1525 1.1674 14 6 1.9598 1.5207 2.4269 15 6 3.3090 2.0184 2.8685 16 6 3.1058 3.1902 3.8516 17 6 2.7860 4.4366 3.1644 18 1 3.6021 4.6862 2.4864 19 8 2.6546 5.4795 4.1324 20 6 3.8745 6.1684 4.4137 21 6 1.4758 4.3364 2.3553 22 6 1.7624 3.6061 1.0717 23 1 -0.3634 -1.0234 0.0938 24 1 -0.3633 0.5929 0.8394 25 1 -0.3634 0.4306 -0.9331 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.0055 0.2294 -3.4293 29 1 2.0120 0.4411 2.2865 30 1 1.2323 1.7363 3.2095 31 1 3.8744 2.3612 2.0019 32 1 3.8517 1.2138 3.3648 33 1 2.2918 2.9430 4.5332 34 1 4.0193 3.3294 4.4298 35 1 3.6908 6.9437 5.1576 36 1 4.6100 5.4624 4.7993 37 1 4.2535 6.6245 3.4991 38 1 0.7310 3.7868 2.9310 39 1 1.1055 5.3371 2.1326 40 1 1.1378 4.0244 0.2823 41 1 2.8087 3.7581 0.8067 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692037023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:53 Heat of formation + Delta-G solvation = -62.503843 kcal Electronic energy + Delta-G solvation = -18904.385827 eV Core-core repulsion = 16204.568631 eV Total energy + Delta-G solvation = -2699.817196 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.78094 -38.64707 -36.11754 -33.80691 -33.20477 -31.95663 -28.83734 -27.75386 -26.51822 -25.45964 -24.58993 -21.99083 -21.38415 -20.10424 -18.17868 -17.77641 -17.29944 -16.66824 -16.24235 -15.87540 -15.56833 -15.17742 -14.52666 -14.43237 -14.15077 -13.93180 -13.80136 -13.29114 -13.06745 -12.85395 -12.82352 -12.65985 -12.44113 -12.26332 -12.03464 -11.85778 -11.75210 -11.65251 -11.51160 -11.19248 -11.12259 -10.66781 -10.48943 -10.39769 -8.66419 -8.05913 -6.15241 1.40073 1.43297 1.53406 2.44375 2.76121 3.21910 3.35100 3.75552 3.88028 4.06671 4.24817 4.33632 4.45995 4.53381 4.54244 4.58869 4.63578 4.78193 4.78815 4.83983 4.86916 4.89766 4.98302 5.04231 5.11190 5.17033 5.26293 5.33121 5.38420 5.40055 5.55137 5.61026 5.78911 5.84480 5.95941 6.26614 6.36250 6.49223 6.89195 7.00936 7.53084 8.99657 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027956 B = 0.007067 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.341158 B = 3961.249804 C = 4491.496533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.108 4.108 3 C 0.228 3.772 4 H -0.043 1.043 5 C -0.506 4.506 6 H 0.058 0.942 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.948 3.052 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.543 5.543 14 C 0.051 3.949 15 C -0.137 4.137 16 C -0.128 4.128 17 C 0.097 3.903 18 H 0.045 0.955 19 O -0.405 6.405 20 C 0.024 3.976 21 C -0.106 4.106 22 C 0.085 3.915 23 H 0.036 0.964 24 H 0.056 0.944 25 H 0.029 0.971 26 H 0.060 0.940 27 H 0.030 0.970 28 H 0.258 0.742 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.896 6.050 12.206 13.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.146 4.146 3 C 0.121 3.879 4 H -0.026 1.026 5 C -0.544 4.544 6 H 0.076 0.924 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.775 3.225 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.208 1.208 13 N -0.269 5.269 14 C -0.076 4.076 15 C -0.176 4.176 16 C -0.166 4.166 17 C 0.039 3.961 18 H 0.064 0.936 19 O -0.324 6.324 20 C -0.072 4.072 21 C -0.144 4.144 22 C -0.043 4.043 23 H 0.055 0.945 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.079 0.921 41 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 0.323 5.954 12.161 13.544 hybrid contribution 1.264 0.218 -1.390 1.891 sum 1.586 6.172 10.771 12.515 Atomic orbital electron populations 1.21317 0.95817 0.98593 1.00842 1.21471 0.96374 0.97571 0.99188 1.18966 0.89954 0.91564 0.87451 1.02574 1.21450 1.30285 1.11708 0.90968 0.92398 1.25596 0.95458 0.95700 1.01712 1.70019 1.37385 1.23685 1.24923 0.85652 0.77927 0.78802 0.80160 1.19206 1.21105 1.20821 1.61958 1.60915 1.01909 1.02082 1.22029 0.94554 0.98922 0.92098 1.21742 0.98889 0.98454 0.98537 1.20937 1.02675 0.94401 0.98585 1.21102 0.97658 0.87764 0.89546 0.93644 1.87889 1.33578 1.49612 1.61355 1.22962 0.86522 0.96707 1.01016 1.21456 0.96835 1.00873 0.95207 1.21379 0.97841 0.88272 0.96761 0.94509 0.92461 0.95160 0.92162 0.95151 0.93245 0.91822 0.90605 0.94204 0.90187 0.90511 0.91173 0.87948 0.93501 0.93947 0.90285 0.90230 0.92109 0.97483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.67 9.50 71.98 0.68 -3.99 16 2 C -0.11 -5.13 5.21 30.59 0.16 -4.97 16 3 C 0.23 11.31 1.71 44.17 0.08 11.38 16 4 H -0.04 -2.44 7.71 -2.39 -0.02 -2.46 16 5 C -0.51 -27.21 6.94 25.60 0.18 -27.03 16 6 H 0.06 3.12 6.05 -2.91 -0.02 3.10 16 7 C 0.01 0.74 5.30 84.65 0.45 1.19 16 8 N -0.92 -52.79 11.30 21.45 0.24 -52.55 16 9 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.54 -22.39 3.61 -878.83 -3.17 -25.56 16 14 C 0.05 1.77 5.01 85.22 0.43 2.19 16 15 C -0.14 -4.20 5.56 30.21 0.17 -4.03 16 16 C -0.13 -3.37 4.82 28.85 0.14 -3.23 16 17 C 0.10 2.73 2.16 28.85 0.06 2.79 16 18 H 0.05 1.35 7.10 -2.39 -0.02 1.34 16 19 O -0.40 -10.80 10.26 -148.98 -1.53 -12.33 16 20 C 0.02 0.47 10.76 113.37 1.22 1.69 16 21 C -0.11 -3.29 5.27 30.21 0.16 -3.13 16 22 C 0.09 3.29 4.26 85.26 0.36 3.65 16 23 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.06 2.34 7.37 -2.39 -0.02 2.32 16 25 H 0.03 1.41 7.48 -2.39 -0.02 1.39 16 26 H 0.06 3.27 6.01 -2.39 -0.01 3.25 16 27 H 0.03 1.32 6.15 -2.39 -0.01 1.30 16 28 H 0.26 14.19 8.31 -92.71 -0.77 13.41 16 29 H 0.06 2.27 5.59 -2.39 -0.01 2.25 16 30 H 0.08 2.33 6.61 -2.38 -0.02 2.32 16 31 H 0.04 1.44 6.61 -2.39 -0.02 1.43 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.08 1.93 7.53 -2.38 -0.02 1.92 16 34 H 0.07 1.62 7.55 -2.39 -0.02 1.60 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.05 0.83 7.59 -2.39 -0.02 0.81 16 37 H 0.04 0.80 8.07 -2.38 -0.02 0.79 16 38 H 0.08 2.43 7.09 -2.39 -0.02 2.41 16 39 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 2.55 6.38 -2.38 -0.02 2.53 16 41 H 0.01 0.29 6.48 -2.39 -0.02 0.28 16 Total: -1.00 -59.17 300.76 2.64 -56.53 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.99 Total: 11.59 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 4.08 Total: -23.47 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -2.93 Total: -78.11 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: -1.53 Total: -12.33 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -59.17 2.64 -56.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692037023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.969 kcal (2) G-P(sol) polarization free energy of solvation -59.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds